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M

Maulik Shukla

university of chicago
H指数:36
被引数:1.8万

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BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration

BV-BRC：一个整合了细菌和病毒生物信息学资源的统一平台，具有扩展功能与人工智能集成

NUCLEIC ACIDS RESEARCH
IF13.1
2025-11-010
PRE
Shukla, Maulik; Wattam, Alice R.; Aleman, Antonio; Bhattacharya, Roshni; Bowers, Nicole; Brettin, Thomas; Capria, Anna; Chia, Nicholas; Cucinell, Clark; Davis, James j; Dempsey, Donald M.; Dickerman, Allan; Dietrich, Emily M.; Gokdemir, Ozan; Hendrickson, R. curtis; Kenyon, Ronald W.; Klahn, Brian; Kuscuoglu, Mehmet; Lefkowitz, Elliot J.; Ma, Heng; Machi, Dustin; Macken, Catherine; Mann, Carla m; Mao, Chunhong; Nguyen, Marcus; Olsen, Gary J.; Olson, Robert D.; Overbeek, Ross; Owens, Sarah M.; Parrello, Bruce; Poretsky, Rachel; Pusch, Gordon D.; Ramanathan, Arvind; Sheriff, Jamal tyrone; Singh, Indresh; Stewart, Lucy; Vanoeffelen, Margo; Vonstein, Veronika; Warren, Andrew S.; Wilke, Andreas; Zmasek, Christian m; Zuniga, Abril; Stevens, Rick L.
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS
IF2.5
2023-10-2720
OA
Zvyagin, Maxim; Brace, Alexander; Hippe, Kyle; Deng, Yuntian; Zhang, Bin; Bohorquez, Cindy Orozco; Clyde, Austin; Kale, Bharat; Perez-Rivera, Danilo; Ma, Heng; Mann, Carla M.; Irvin, Michael; Ozgulbas, Defne G.; Vassilieva, Natalia; Pauloski, James Gregory; Ward, Logan; Hayot-Sasson, Valerie; Emani, Murali; Foreman, Sam; Xie, Zhen; Lin, Diangen; Shukla, Maulik; Nie, Weili; Romero, Josh; Dallago, Christian; Vahdat, Arash; Xiao, Chaowei; Gibbs, Thomas; Foster, Ian; Davis, James J.; Papka, Michael E.; Brettin, Thomas; Stevens, Rick; Anandkumar, Anima; Vishwanath, Venkatram; Ramanathan, Arvind
US National Institutes of Health Prioritization of SARS-CoV-2 Variants

美国国立卫生研究院优先考虑SARS-CoV-2变异

EMERGING INFECTIOUS DISEASES
IF6.6
2023-05-013
OAAI
Turner, Sam; Alisoltani, Arghavan; Bratt, Debbie; Cohen-Lavi, Liel; Dearlove, Bethany L.; Drosten, Christian; Fischer, Will M.; Fouchier, Ron A. M.; Gonzalez-Reiche, Ana Silvia; Jaroszewski, Lukasz; Khalil, Zain; LeGresley, Eric; Johnson, Marc; Jones, Terry C.; Muehlemann, Barbara; O'Connor, David; Sedova, Mayya; Shukla, Maulik; Theiler, James; Wallace, Zachary S.; Yoon, Hyejin; Zhang, Yun; van Bakel, Harm; Degrace, Marciela M.; Ghedin, Elodie; Godzik, Adam; Hertz, Tomer; Korber, Bette; Lemieux, Jacob; Niewiadomska, Anna M.; Post, Diane J.; Rolland, Morgane; Scheuermann, Richard; Smith, Derek J.
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

介绍细菌和病毒生物信息学资源中心 (bv-brc): 结合PATRIC，IRD和ViPR的资源

NUCLEIC ACIDS RESEARCH
IF13.1
2022-11-09384
OA
Olson, Robert D.; Assaf, Rida; Brettin, Thomas; Conrad, Neal; Cucinell, Clark; Davis, James J.; Dempsey, Donald M.; Dickerman, Allan; Dietrich, Emily M.; Kenyon, Ronald W.; Kuscuoglu, Mehmet; Lefkowitz, Elliot J.; Lu, Jian; Machi, Dustin; Macken, Catherine; Mao, Chunhong; Niewiadomska, Anna; Nguyen, Marcus; Olsen, Gary J.; Overbeek, Jamie C.; Parrello, Bruce; Parrello, Victoria; Porter, Jacob S.; Pusch, Gordon D.; Shukla, Maulik; Singh, Indresh; Stewart, Lucy; Tan, Gene; Thomas, Chris; VanOeffelen, Margo; Vonstein, Veronika; Wallace, Zachary S.; Warren, Andrew S.; Wattam, Alice R.; Xia, Fangfang; Yoo, Hyunseung; Zhang, Yun; Zmasek, Christian M.; Scheuermann, Richard H.; Stevens, Rick L.
A cross-study analysis of drug response prediction in cancer cell lines

癌细胞系药物反应预测的交叉研究分析

BRIEFINGS IN BIOINFORMATICS
IF7.7
2021-09-1441
OAAI
Xia, Fangfang; Allen, Jonathan; Balaprakash, Prasanna; Brettin, Thomas; Garcia-Cardona, Cristina; Clyde, Austin; Cohn, Judith; Doroshow, James; Duan, Xiaotian; Dubinkina, Veronika; Evrard, Yvonne; Fan, Ya Ju; Gans, Jason; He, Stewart; Lu, Pinyi; Maslov, Sergei; Partin, Alexander; Shukla, Maulik; Stahlberg, Eric; Wozniak, Justin M.; Yoo, Hyunseung; Zaki, George; Zhu, Yitan; Stevens, Rick
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes

从实验室衍生的抗菌药敏表型预测抗菌药耐药性的基因组数据资源

BRIEFINGS IN BIOINFORMATICS
IF7.7
2021-08-1114
OA
VanOeffelen, Margo; Nguyen, Marcus; Aytan-Aktug, Derya; Brettin, Thomas; Dietrich, Emily M.; Kenyon, Ronald W.; Machi, Dustin; Mao, Chunhong; Olson, Robert; Pusch, Gordon D.; Shukla, Maulik; Stevens, Rick; Vonstein, Veronika; Warren, Andrew S.; Wattam, Alice R.; Yoo, Hyunseung; Davis, James J.
Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area
MBIO
IF4.7
2020-12-2290
OAAI
Long, S. Wesley; Olsen, Randall J.; Christensen, Paul A.; Bernard, David W.; Davis, James J.; Shukla, Maulik; Nguyen, Marcus; Saavedra, Matthew Ojeda; Yerramilli, Prasanti; Pruitt, Layne; Subedi, Sishir; Kuo, Hung-Che; Hendrickson, Heather; Eskandari, Ghazaleh; Nguyen, Hoang A. T.; Long, J. Hunter; Kumaraswami, Muthiah; Goike, Jule; Boutz, Daniel; Gollihar, Jimmy; McLellan, Jason S.; Chou, Chia-Wei; Javanmardi, Kamyab; Finkelstein, Ilya J.; Musser, James M.
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
NUCLEIC ACIDS RESEARCH
IF13.1
2019-10-31752
OAAI
Davis, James J.; Wattam, Alice R.; Aziz, Ramy K.; Brettin, Thomas; Butler, Ralph; Butler, Rory M.; Chlenski, Philippe; Conrad, Neal; Dickerman, Allan; Dietrich, Emily M.; Gabbard, Joseph L.; Gerdes, Svetlana; Guard, Andrew; Kenyon, Ronald W.; Machi, Dustin; Mao, Chunhong; Murphy-Olson, Dan; Nguyen, Marcus; Nordberg, Eric K.; Olsen, Gary J.; Olson, Robert D.; Overbeek, Jamie C.; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D.; Shukla, Maulik; Thomas, Chris; VanOeffelen, Margo; Vonstein, Veronika; Warren, Andrew S.; Xia, Fangfang; Xie, Dawen; Yoo, Hyunseung; Stevens, Rick
KBase: The United States Department of Energy Systems Biology Knowledgebase
NATURE BIOTECHNOLOGY
IF41.7
2018-07-06928
OAAI
Arkin, Adam P.; Cottingham, Robert W.; Henry, Christopher S.; Harris, Nomi L.; Stevens, Rick L.; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W.; Henderson, Matthew L.; Riehl, William J.; Murphy-Olson, Dan; Chan, Stephen Y.; Kamimura, Roy T.; Kumari, Sunita; Drake, Meghan M.; Brettin, Thomas S.; Glass, Elizabeth M.; Chivian, Dylan; Gunter, Dan; Weston, David J.; Allen, Benjamin H.; Baumohl, Jason; Best, Aaron A.; Bowen, Ben; Brenner, Steven E.; Bun, Christopher C.; Chandonia, John-Marc; Chia, Jer-Ming; Colasanti, Ric; Conrad, Neal; Davis, James J.; Davison, Brian H.; DeJongh, Matthew; Devoid, Scott; Dietrich, Emily; Dubchak, Inna; Edirisinghe, Janaka N.; Fang, Gang; Faria, Jose P.; Frybarger, Paul M.; Gerlach, Wolfgang; Gerstein, Mark; Greiner, Annette; Gurtowski, James; Haun, Holly L.; He, Fei; Jain, Rashmi; Joachimiak, Marcin P.; Keegan, Kevin P.; Kondo, Shinnosuke; Kumar, Vivek; Land, Miriam L.; Meyer, Folker; Mills, Marissa; Novichkov, Pavel S.; Oh, Taeyun; Olsen, Gary J.; Olson, Robert; Parrello, Bruce; Pasternak, Shiran; Pearson, Erik; Poon, Sarah S.; Price, Gavin A.; Ramakrishnan, Srividya; Ranjan, Priya; Ronald, Pamela C.; Schatz, Michael C.; Seaver, Samuel M. D.; Shukla, Maulik; Sutormin, Roman A.; Syed, Mustafa H.; Thomason, James; Tintle, Nathan L.; Wang, Daifeng; Xia, Fangfang; Yoo, Hyunseung; Yoo, Shinjae; Yu, Dantong
PATRIC as a unique resource for studying antimicrobial resistance
BRIEFINGS IN BIOINFORMATICS
IF7.7
2017-07-3172
OAAI
Antonopoulos, Dionysios A.; Assaf, Rida; Aziz, Ramy Karam; Brettin, Thomas; Bun, Christopher; Conrad, Neal; Davis, James J.; Dietrich, Emily M.; Disz, Terry; Gerdes, Svetlana; Kenyon, Ronald W.; Machi, Dustin; Mao, Chunhong; Murphy-Olson, Daniel E.; Nordberg, Eric K.; Olsen, Gary J.; Olson, Robert; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D.; Santerre, John; Shukla, Maulik; Stevens, Rick L.; VanOeffelen, Margo; Vonstein, Veronika; Warren, Andrew S.; Wattam, Alice R.; Xia, Fangfang; Yoo, Hyunseung
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
NUCLEIC ACIDS RESEARCH
IF13.1
2016-11-291.3K
OAAI
Wattam, Alice R.; Davis, James J.; Assaf, Rida; Boisvert, Sebastien; Brettin, Thomas; Bun, Christopher; Conrad, Neal; Dietrich, Emily M.; Disz, Terry; Gabbard, Joseph L.; Gerdes, Svetlana; Henry, Christopher S.; Kenyon, Ronald W.; Machi, Dustin; Mao, Chunhong; Nordberg, Eric K.; Olsen, Gary J.; Murphy-Olson, Daniel E.; Olson, Robert; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D.; Shukla, Maulik; Vonstein, Veronika; Warren, Andrew; Xia, Fangfang; Yoo, Hyunseung; Stevens, Rick L.
Antimicrobial Resistance Prediction in PATRIC and RAST

PATRIC和RAST中的抗菌素耐药性预测

SCIENTIFIC REPORTS
IF3.9
2016-06-14161
OAAI
Davis, James J.; Boisvert, Sebastien; Brettin, Thomas; Kenyon, Ronald W.; Mao, Chunhong; Olson, Robert; Overbeek, Ross; Santerre, John; Shukla, Maulik; Wattam, Alice R.; Will, Rebecca; Xia, Fangfang; Stevens, Rick

研究方向

暂未获取到该数据
R
Rick Stevens
H 指数:61论文数:339被引数:4.3万
T
Thomas Brettin
H 指数:60论文数:259被引数:2.2万
F
Fangfang Xia
H 指数:45论文数:175被引数:1.9万
J
James J. Davis
H 指数:33论文数:83被引数:1.6万
R
Robert Olson
H 指数:35论文数:106被引数:3.0万
H
Hyunseung Yoo
H 指数:21论文数:51被引数:7,017
A
Alice R. Wattam
H 指数:29论文数:65被引数:1.5万
G
Gordon D. Pusch
H 指数:27论文数:53被引数:2.9万
V
Veronika Vonstein
H 指数:25论文数:58被引数:2.6万
R
Ronald W. Kenyon
H 指数:15论文数:33被引数:6,350