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Ruben Dries

Avedisian School of Medicine and Boston Medical Center

23H指数
119论文数
6.8K被引数
收录论文 29
发表时间
Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystemGiotto Suite:一个多尺度且技术无关的空间多组学分析生态系统
err2025-10-01
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errOAAI
errJiaji G. Chen; Joselyn C. Chávez-Fuentes; Matthew O’Brien; Junxiang Xu; Edward C. Ruiz; Wen Wang; Iqra Amin; Jeffrey P. Sheridan; Sujung C. Shin; Sanjana V. Hasyagar; Irzam Sarfraz; Pratishtha Guckhool; Adriana Sistig; Veronica Jarzabek; Guo-Cheng Yuan; Ruben Dries
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Activation and targetability of TYMP-IL-6-TF signaling in the skin microenvironment in uremic calciphylaxis尿毒症钙化防御皮肤微环境中TYMP-IL-6-TF信号通路的激活与靶向性
err2025-04-23
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PREAI
errNapoleon, Marc Arthur; Yang, Xiaosheng; Zhang, Yichi; Morrissey, Austin; Krinsky, Scott; Lazowski, Adam; Bouchouari, Houda; Brahim, Abbas Malloum; Sellinger, Isaac; Edwards, Thierry; Jose, Asha; Lotfolhzadeh, Saran; Almiron, Ricardo; Yin, Wenqing; Siracuse, Jeffrey J.; Francis, Jean; Lokau, Juliane; Garbers, Christoph; Del Carmen, Piqueras Maria; Kolachalama, Vijaya B.; Dries, Ruben; Nazarian, Rosalynn M.; Nigwekar, Sagar U.; Chitalia, Vipul C.
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Integrative Multi-modal Spatial Analysis Reveals Subtype-specific Tumor Microenvironment Alterations in Non-functional Pancreatic Neuroendocrine Tumors
err2025-03-01
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PREAI
errXu, Junxiang; Mori, Joakin; Jarzabek, Veronica; Dufort, Kenel; Lanza, Carlo; Smith, Katelyn; Singhi, Aatur; Dries, Ruben; Heaphy, Christopher
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MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data
err2024-08-01
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errOAAI
errSarfraz, Irzam; Wang, Yichen; Shastry, Amulya; Teh, Wei Kheng; Sokolov, Artem; Herb, Brian R.; Creasy, Heather H.; Virshup, Isaac; Dries, Ruben; Degatano, Kylee; Mahurkar, Anup; Schnell, Daniel J.; Madrigal, Pedro; Hilton, Jason; Gehlenborg, Nils; Tickle, Timothy; Campbell, Joshua D.
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The MYCN 5' ' UTR as a therapeutic target in neuroblastoma
err2024-05-01
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errVolegova, Marina P.; Brown, Lauren E.; Banerjee, Ushashi; Dries, Ruben; Sharma, Bandana; Kennedy, Alyssa; Porco Jr, John A.; George, Rani E.
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Unraveling the biology of TNBC in African American women through the WHITNEY study.
err2023-01-01
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PREAI
errPeiris, Malalage N.; Kelly, Emma; Ennis, Christina; Mahdaviani, Kiana; Dedeoglu, Aylin; Ilinski, Adrian; Rheinbay, Esther; Dries, Ruben; Ko, Naomi; Ellisen, Leif
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The crosstalk within the breast tumor microenvironment in type II diabetes: Implications for cancer disparities
err2022-12-01
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errEnnis, Christina S.; Llevenes, Pablo; Qiu, Yuhan; Dries, Ruben; Denis, Gerald V.
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Mesenchymal and adrenergic cell lineage states in neuroblastoma possess distinct immunogenic phenotypes神经母细胞瘤中的间充质和肾上腺素能细胞谱系状态具有不同的免疫原性表型
err2022-09-22
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errSengupta, Satyaki; Das, Sanjukta; Crespo, Angela C.; Cornel, Annelisa M.; Patel, Anand G.; Mahadevan, Navin R.; Campisi, Marco; Ali, Alaa K.; Sharma, Bandana; Rowe, Jared H.; Huang, Hao; Debruyne, David N.; Cerda, Esther D.; Krajewska, Malgorzata; Dries, Ruben; Chen, Minyue; Zhang, Shupei; Soriano, Luigi; Cohen, Malkiel A.; Versteeg, Rogier; Jaenisch, Rudolf; Spranger, Stefani; Romee, Rizwan; Miller, Brian C.; Barbie, David A.; Nierkens, Stefan; Dyer, Michael A.; Lieberman, Judy; George, Rani E.
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Stem cells, cell therapies, and bioengineering in lung biology and disease 2021肺生物学和疾病2021中的干细胞,细胞疗法和生物工程
err2022-09-01
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errIkonomou, Laertis; Magnusson, Mattias; Dries, Ruben; Herzog, Erica L.; Hynds, Robert E.; Borok, Zea; Park, Jin-Ah; Skolasinski, Steven; Burgess, Janette K.; Turner, Leigh; Mojarad, Sarah M.; Mahoney, John E.; Lynch, Thomas; Lehmann, Mareike; Thannickal, Victor J.; Hook, Jamie L.; Vaughan, Andrew E.; Hoffman, Evan T.; Weiss, Daniel J.; Ryan, Amy L.
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Multi-modal profiling of human fetal liver hematopoietic stem cells reveals the molecular signature of engraftment
err2022-03-01
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errVanuytsel, Kim; Villacorta-Martin, Carlos; Lindstrom-Vautrin, Jonathan; Wang, Zhe; Garcia-Beltran, Wilfredo F.; Vrbanac, Vladimir; Parsons, Dylan; Lam, Evan C.; Matte, Taylor M.; Dowrey, Todd W.; Kumar, Sara S.; Li, Mengze; Wang, Feiya; Yeung, Anthony K.; Mostoslavsky, Gustavo; Dries, Ruben; Campbell, Joshua D.; Belkina, Anna C.; Balazs, Alejandro B.; Murphy, George J.
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Advances in spatial transcriptomic data analysis
err2021-10-01
err128
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errDries, Ruben; Chen, Jiaji; Del Rossi, Natalie; Khan, Mohammed Muzamil; Sistig, Adriana; Yuan, Guo-Cheng
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Community-wide hackathons to identify central themes in single-cell multi-omics (vol 22, 220, 2021)
err2021-08-25
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errCao, Kim-Anh Le; Abadi, Al J.; Davis-Marcisak, Emily F.; Hsu, Lauren; Arora, Arshi; Coullomb, Alexis; Deshpande, Atul; Feng, Yuzhou; Jeganathan, Pratheepa; Loth, Melanie; Meng, Chen; Mu, Wancen; Pancaldi, Vera; Sankaran, Kris; Righelli, Dario; Singh, Amrit; Sodicoff, Joshua S.; Stein-O'Brien, Genevieve L.; Subramanian, Ayshwarya; Welch, Joshua D.; You, Yue; Argelaguet, Ricard; Carey, Vincent J.; Dries, Ruben; Greene, Casey S.; Holmes, Susan; Love, Michael I.; Ritchie, Matthew E.; Yuan, Guo-Cheng; Culhane, Aedin C.; Fertig, Elana
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Extracellular domain shedding of the ALK receptor mediates neuroblastoma cell migration
err2021-07-01
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errHuang, Hao; Gont, Alexander; Kee, Lynn; Dries, Ruben; Pfeifer, Kathrin; Sharma, Bandana; Debruyne, David N.; Harlow, Matthew; Sengupta, Satyaki; Guan, Jikui; Yeung, Caleb M.; Wang, Wenchao; Hallberg, Bengt; Palmer, Ruth H.; Irwin, Meredith S.; George, Rani E.
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Discovery and resistance mechanism of a selective CDK12 degrader
err2021-03-22
err84
errOAAI
errJiang, Baishan; Gao, Yang; Che, Jianwei; Lu, Wenchao; Kaltheuner, Ines H.; Dries, Ruben; Kalocsay, Marian; Berberich, Matthew J.; Jiang, Jie; You, Inchul; Kwiatkowski, Nicholas; Riching, Kristin M.; Daniels, Danette L.; Sorger, Peter K.; Geyer, Matthias; Zhang, Tinghu; Gray, Nathanael S.
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Giotto: a toolbox for integrative analysis and visualization of spatial expression dataGiotto: 空间表达数据的综合分析和可视化工具箱
err2021-03-08
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errDries, Ruben; Zhu, Qian; Dong, Rui; Eng, Chee-Huat Linus; Li, Huipeng; Liu, Kan; Fu, Yuntian; Zhao, Tianxiao; Sarkar, Arpan; Bao, Feng; George, Rani E.; Pierson, Nico; Cai, Long; Yuan, Guo-Cheng
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Multifaceted actions of Zeb2 in postnatal neurogenesis from the ventricular-subventricular zone to the olfactory bulb
err2020-01-01
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errDeryckere, Astrid; Stappers, Elke; Dries, Ruben; Peyre, Elise; van den Berghe, Veronique; Conidi, Andrea; Zampeta, F. Isabella; Francis, Annick; Bresseleers, Marjolein; Stryjewska, Agata; Vanlaer, Ria; Maas, Elke; Smal, Ihor, V; van IJcken, Wilfred F. J.; Grosveld, Frank G.; Nguyen, Laurent; Huylebroeck, Danny; Seuntjens, Eve
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Integrative and perturbation based analysis of the transcriptional dynamics of TGFβ/BMP system components in transition from embryonic stem cells to neural progenitors
err2019-12-13
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errDries, Ruben; Stryjewska, Agata; Coddens, Kathleen; Okawa, Satoshi; Notelaers, Tineke; Birkhoff, Judith; Dekker, Mike; Verfaillie, Catherine M.; del Sol, Antonio; Mulugeta, Eskeatnaf; Conidi, Andrea; Grosveld, Frank G.; Huylebroeck, Danny
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CDK12 loss in cancer cells affects DNA damage response genes through premature cleavage and polyadenylation
err2019-04-15
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errKrajewska, Malgorzata; Dries, Ruben; Grassetti, Andrew, V; Dust, Sofia; Gao, Yang; Huang, Hao; Sharma, Bandana; Day, Daniel S.; Kwiatkowski, Nicholas; Pomaville, Monica; Dodd, Oliver; Chipumuro, Edmond; Zhang, Tinghu; Greenleaf, Arno L.; Yuan, Guo-Cheng; Gray, Nathanael S.; Young, Richard A.; Geyers, Matthias; Gerber, Scott A.; George, Rani E.
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Co-clinical trial of olaparib and temozolomide in SCLC PDX models uncovers new biomarkers of sensitivity
err2018-07-01
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PREAI
errDrapkin, Benjamin J.; George, Julie; Stanzione, Marcello; Yeap, Beow Y.; Mino-Kenudson, Mari; Christensen, Camilla L.; Dries, Ruben; Phat, Sarah; Zhong, Jun; Myers, David T.; Licausi, Joseph A.; Sundaresan, Tilak; Kem, Marina; Abedpour, Nima; Sequist, Leica V.; Shaw, Alice T.; Hata, Aaron N.; Toner, Mehmet; Maheswaran, Shyamala; Haber, Daniel A.; Peifer, Martin; Thomas, Roman K.; Farago, Anna F.; Dyson, Nicholas J.
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