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Alexander Kozik

University of California System

H指数:27

被引数:6,138

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MoGAAAP: a modular Snakemake workflow for automated genome assembly and annotation with quality assessment

MoGAAAP：一个模块化的Snakemake工作流，用于带质量评估的基因组组装和注释自动化

NAR Genomics and Bioinformatics

IF2.8

2026-03-010

PRE

A trio-binning approach for genome assembly reveals extensive structural variation between two Cannabis cultivars: Punto Rojo and Cherry Pie

一种用于基因组组装的三联体分箱方法揭示了两种大麻栽培品种（Punto Rojo和Cherry Pie）之间广泛的基因组结构变异

G3-Genes Genomes Genetics

IF2.2

2025-12-010

OA

Isolating an active and inactive CACTA transposon from lettuce color mutants and characterizing their family

PLANT PHYSIOLOGY

IF6.9

2021-03-267

OAAI

Drone phenotyping and machine learning enable discovery of loci regulating daily floral opening in lettuce

JOURNAL OF EXPERIMENTAL BOTANY

IF5.7

2021-03-0311

OAAI

The alternative reality of plant mitochondrial DNA: One ring does not rule them all

IF3.7

2019-08-30243

OAAI

Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce

NATURE COMMUNICATIONS

IF15.7

2017-04-12328

OAAI

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

NATURE GENETICS

IF31.8

2016-02-22704

OAAI

Bertioli, David John; Cannon, Steven B.; Froenicke, Lutz; Huang, Guodong; Farmer, Andrew D.; Cannon, Ethalinda K. S.; Liu, Xin; Gao, Dongying; Clevenger, Josh; Dash, Sudhansu; Ren, Longhui; Moretzsohn, Marcio C.; Shirasawa, Kenta; Huang, Wei; Vidigal, Bruna; Abernathy, Brian; Chu, Ye; Niederhuth, Chad E.; Umale, Pooja; Araujo, Ana Claudia G.; Kozik, Alexander; Do Kim, Kyung; Burow, Mark D.; Varshney, Rajeev K.; Wang, Xingjun; Zhang, Xinyou; Barkley, Noelle; Guimaraes, Patricia M.; Isobe, Sachiko; Guo, Baozhu; Liao, Boshou; Stalker, H. Thomas; Schmitz, Robert J.; Scheffler, Brian E.; Leal-Bertioli, Soraya C. M.; Xun, Xu; Jackson, Scott A.; Michelmore, Richard; Ozias-Akins, Peggy

Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis

拟南芥中小RNA对反向重复序列诱导的转录后基因沉默与内源RNA沉默途径的独特特征

IF5

2014-10-2418

OAAI

Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)

IF3.7

2012-05-1440

OAAI

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

IF3.7

2012-01-0187

OAAI

Comparative Large-Scale Analysis of Interactions between Several Crop Species and the Effector Repertoires from Multiple Pathovars of Pseudomonas and Ralstonia

PLANT PHYSIOLOGY

IF6.9

2009-07-0197

OAAI

Sampling nucleotide diversity in cotton

BMC PLANT BIOLOGY

IF4.8

2009-01-0168

OAAI

Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years

菊科进化过程中的多个古多倍体揭示了数百万年后重复基因保留的平行模式

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2008-08-21293

OAAI

Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis

BMC PLANT BIOLOGY

IF4.8

2007-10-23169

OAAI

Diversity in conserved genes in tomato

IF3.7

2007-01-0168

OAAI

Analyses of synteny between Arabidopsis thaliana and species in the asteraceae reveal a complex network of small syntenic segments and major chromosomal rearrangements

IF5.1

2006-08-0135

OA

High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis

GENOME RESEARCH

IF5.5

2006-05-15168

OAAI

Functional analysis of the plant disease resistance gene Pto using DNA shuffling

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2005-06-0123

OAAI

DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization

IF9.4

2003-09-1954

OAAI

Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis

IF11.6

2003-04-011.5K

OAAI