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David Koslicki

university park

25H指数
222论文数
3.0K被引数
收录论文 19
发表时间
Announcing the Biomedical Data Translator: Initial Public Release宣布生物医学数据翻译器:首次公开发布
err2025-07-09
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errKaramarie Fecho; Gwênlyn Glusman; Sergio E. Baranzini; Chris Bizon; Matthew Brush; William Byrd; Lawrence Chung; Andrew Crouse; Eric Deutsch; Michel Dumontier; Aleksandra Foksinska; Jennifer Hadlock; Kaiwen He; Sui Huang; Robert Hubal; Gregory M. Hyde; Sharat Israni; Kelyne Kenmogne; David Koslicki; Jana Dorfman Marcette; Ewy A. Mathe; Abrar Mesbah; Sierra A. T. Moxon; Christopher J. Mungall; John Osborne; Carrie Pasfield; Guangrong Qin; Stephen A. Ramsey; Justin Reese; Jared C. Roach; Reese Rose; Karthik Soman; Andrew I. Su; Casey Ta; Gaurav Vaidya; Rosina Weber; Qi Wei; Mark Williams; Chunlei Wu; Colleen Xu; Chase Yakaboski; The Biomedical Data Translator Consortium
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A designed synthetic microbiota provides insight to community function in Clostridioides difficile resistance一种设计的合成微生物组为艰难梭菌属耐药性中的群落功能提供了见解
err2025-03-01
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errTian, Shuchang; Kim, Min Soo; Zhao, Jingcheng; Heber, Kerim; Hao, Fuhua; Koslicki, David; Tian, Sangshan; Singh, Vishal; Patterson, Andrew D.; Bisanz, Jordan E.
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TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles
err2023-02-28
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errSarwal, Varuni; Brito, Jaqueline; Mangul, Serghei; Koslicki, David
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Critical Assessment of Metagenome Interpretation: the second round of challenges
err2022-04-08
err136
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errMeyer, Fernando; Fritz, Adrian; Deng, Zhi-Luo; Koslicki, David; Lesker, Till Robin; Gurevich, Alexey; Robertson, Gary; Alser, Mohammed; Antipov, Dmitry; Beghini, Francesco; Bertrand, Denis; Brito, Jaqueline J.; Brown, C. Titus; Buchmann, Jan; Buluc, Aydin; Chen, Bo; Chikhi, Rayan; Clausen, Philip T. L. C.; Cristian, Alexandru; Dabrowski, Piotr Wojciech; Darling, Aaron E.; Egan, Rob; Eskin, Eleazar; Georganas, Evangelos; Goltsman, Eugene; Gray, Melissa A.; Hansen, Lars Hestbjerg; Hofmeyr, Steven; Huang, Pingqin; Irber, Luiz; Jia, Huijue; Jorgensen, Tue Sparholt; Kieser, Silas D.; Klemetsen, Terje; Kola, Axel; Kolmogorov, Mikhail; Korobeynikov, Anton; Kwan, Jason; LaPierre, Nathan; Lemaitre, Claire; Li, Chenhao; Limasset, Antoine; Malcher-Miranda, Fabio; Mangul, Serghei; Marcelino, Vanessa R.; Marchet, Camille; Marijon, Pierre; Meleshko, Dmitry; Mende, Daniel R.; Milanese, Alessio; Nagarajan, Niranjan; Nissen, Jakob; Nurk, Sergey; Oliker, Leonid; Paoli, Lucas; Peterlongo, Pierre; Piro, Vitor C.; Porter, Jacob S.; Rasmussen, Simon; Rees, Evan R.; Reinert, Knut; Renard, Bernhard; Robertsen, Espen Mikal; Rosen, Gail L.; Ruscheweyh, Hans-Joachim; Sarwal, Varuni; Segata, Nicola; Seiler, Enrico; Shi, Lizhen; Sun, Fengzhu; Sunagawa, Shinichi; Sorensen, Soren Johannes; Thomas, Ashleigh; Tong, Chengxuan; Trajkovski, Mirko; Tremblay, Julien; Uritskiy, Gherman; Vicedomini, Riccardo; Wang, Zhengyang; Wang, Ziye; Wang, Zhong; Warren, Andrew; Willassen, Nils Peder; Yelick, Katherine; You, Ronghui; Zeller, Georg; Zhao, Zhengqiao; Zhu, Shanfeng; Zhu, Jie; Garrido-Oter, Ruben; Gastmeier, Petra; Hacquard, Stephane; Haeussler, Susanne; Khaledi, Ariane; Maechler, Friederike; Mesny, Fantin; Radutoiu, Simona; Schulze-Lefert, Paul; Smit, Nathiana; Strowig, Till; Bremges, Andreas; Sczyrba, Alexander; McHardy, Alice Carolyn
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Technology dictates algorithms: recent developments in read alignment
err2021-08-26
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errAlser, Mohammed; Rotman, Jeremy; Deshpande, Dhrithi; Taraszka, Kodi; Shi, Huwenbo; Baykal, Pelin Icer; Yang, Harry Taegyun; Xue, Victor; Knyazev, Sergey; Singer, Benjamin D.; Balliu, Brunilda; Koslicki, David; Skums, Pavel; Zelikovsky, Alex; Alkan, Can; Mutlu, Onur; Mangul, Serghei
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Application of MCAT questions as a testing tool and evaluation metric for knowledge graph-based reasoning systems
err2021-04-09
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errFecho, Karamarie; Balhoff, James; Bizon, Chris; Byrd, William E.; Hang, Sui; Koslicki, David; Rensi, Stefano E.; Schmitt, Patrick L.; Wawer, Mathias J.; Williams, Mark; Ahalt, Stanley C.
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Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit教程: 使用CAMI基准测试工具包评估宏基因组学软件
err2021-03-01
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errMeyer, Fernando; Lesker, Till-Robin; Koslicki, David; Fritz, Adrian; Gurevich, Alexey; Darling, Aaron E.; Sczyrba, Alexander; Bremges, Andreas; McHardy, Alice C.
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Metalign: efficient alignment-based metagenomic profiling via containment min hash
err2020-09-10
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errLaPierre, Nathan; Alser, Mohammed; Eskin, Eleazar; Koslicki, David; Mangul, Serghei
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Assessing taxonomic metagenome profilers with OPAL用蛋白石评估分类学宏基因组分析器
err2019-03-04
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errMeyer, Fernando; Bremges, Andreas; Belmann, Peter; Janssen, Stefan; McHardy, Alice C.; Koslicki, David
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Striped UniFrac: enabling microbiome analysis at unprecedented scale条纹UniFrac: 以前所未有的规模实现微生物组分析
err2018-10-30
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errMcDonald, Daniel; Vazquez-Baeza, Yoshiki; Koslicki, David; McClelland, Jason; Reeve, Nicolai; Xu, Zhenjiang; Gonzalez, Antonio; Knight, Rob
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Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia
err2018-05-10
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errLoohuis, Loes M. Olde; Mangul, Serghei; Ori, Anil P. S.; Jospin, Guillaume; Koslicki, David; Yang, Harry Taegyun; Wu, Timothy; Boks, Marco P.; Lomen-Hoerth, Catherine; Wiedau-Pazos, Martina; Cantor, Rita M.; de Vos, Willem M.; Kahn, Rene S.; Eskin, Eleazar; Ophoff, Roel A.
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Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software宏基因组解释的关键评估-宏基因组学软件的基准
err2017-10-02
err544
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errSczyrba, Alexander; Hofmann, Peter; Belmann, Peter; Koslicki, David; Janssen, Stefan; Droege, Johannes; Gregor, Ivan; Majda, Stephan; Fiedler, Jessika; Dahms, Eik; Bremges, Andreas; Fritz, Adrian; Garrido-Oter, Ruben; Jorgensen, Tue Sparholt; Shapiro, Nicole; Blood, Philip D.; Gurevich, Alexey; Bai, Yang; Turaev, Dmitrij; DeMaere, Matthew Z.; Chikhi, Rayan; Nagarajan, Niranjan; Quince, Christopher; Meyer, Fernando; Balvociute, Monika; Hansen, Lars Hestbjerg; Sorensen, Soren J.; Chia, Burton K. H.; Denis, Bertrand; Froula, Jeff L.; Wang, Zhong; Egan, Robert; Kang, Dongwan Don; Cook, Jeffrey J.; Deltel, Charles; Beckstette, Michael; Lemaitre, Claire; Peterlongo, Pierre; Rizk, Guillaume; Lavenier, Dominique; Wu, Yu-Wei; Singer, Steven W.; Jain, Chirag; Strous, Marc; Klingenberg, Heiner; Meinicke, Peter; Barton, Michael D.; Lingner, Thomas; Lin, Hsin-Hung; Liao, Yu-Chieh; Silva, Genivaldo Gueiros Z.; Cuevas, Daniel A.; Edwards, Robert A.; Saha, Surya; Piro, Vitor C.; Renard, Bernhard Y.; Pop, Mihai; Klenk, Hans-Peter; Goeker, Markus; Kyrpides, Nikos C.; Woyke, Tanja; Vorholt, Julia A.; Schulze-Lefert, Paul; Rubin, Edward M.; Darling, Aaron E.; Rattei, Thomas; McHardy, Alice C.
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