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An integrated single-cell reference atlas of the human endometrium 人子宫内膜的集成单细胞参考图谱 Mareckova, Magda; Garcia-Alonso, Luz; Moullet, Marie; Lorenzi, Valentina; Petryszak, Robert; Sancho-Serra, Carmen; Oszlanczi, Agnes; Mazzeo, Cecilia Icoresi; Wong, Frederick C. K.; Kelava, Iva; Hoffman, Sophie; Krassowski, Michal; Garbutt, Kurtis; Gaitskell, Kezia; Yancheva, Slaveya; Woon, Ee Von; Male, Victoria; Granne, Ingrid; Hellner, Karin; Mahbubani, Krishnaa T.; Saeb-Parsy, Kourosh; Lotfollahi, Mohammad; Prigmore, Elena; Southcombe, Jennifer; Dragovic, Rebecca A.; Becker, Christian M.; Zondervan, Krina T.; Vento-Tormo, Roser 分享 收藏
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Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data 用于单细胞T细胞受体和基因表达数据联合分析的多模态生成建模 Drost, Felix; An, Yang; Bonafonte-Pardas, Irene; Dratva, Lisa M.; Lindeboom, Rik G. H.; Haniffa, Muzlifah; Teichmann, Sarah A.; Theis, Fabian; Lotfollahi, Mohammad; Schubert, Benjamin 分享 收藏
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An integrated cell atlas of the lung in health and disease 健康和疾病中肺的综合细胞图谱 Sikkema, Lisa; Ramirez-Suastegui, Ciro; Strobl, Daniel C.; Gillett, Tessa E.; Zappia, Luke; Madissoon, Elo; Markov, Nikolay S.; Zaragosi, Laure-Emmanuelle; Ji, Yuge; Ansari, Meshal; Arguel, Marie-Jeanne; Apperloo, Leonie; Banchero, Martin; Becavin, Christophe; Berg, Marijn; Chichelnitskiy, Evgeny; Chung, Mei-i; Collin, Antoine; Gay, Aurore C. A.; Gote-Schniering, Janine; Kashani, Baharak Hooshiar; Inecik, Kemal; Jain, Manu; Kapellos, Theodore S.; Kole, Tessa M.; Leroy, Sylvie; Mayr, Christoph H.; Oliver, Amanda J.; von Papen, Michael; Peter, Lance; Taylor, Chase J.; Walzthoeni, Thomas; Xu, Chuan; Bui, Linh T.; De Donno, Carlo; Dony, Leander; Faiz, Alen; Guo, Minzhe; Gutierrez, Austin J.; Heumos, Lukas; Huang, Ni; Ibarra, Ignacio L.; Jackson, Nathan D.; Murthy, Preetish Kadur Lakshminarasimha; Lotfollahi, Mohammad; Tabib, Tracy; Talavera-Lopez, Carlos; Travaglini, Kyle J.; Wilbrey-Clark, Anna; Worlock, Kaylee B.; Yoshida, Masahiro; van den Berge, Maarten; Bosse, Yohan; Desai, Tushar J.; Eickelberg, Oliver; Kaminski, Naftali; Krasnow, Mark A.; Lafyatis, Robert; Nikolic, Marko Z.; Powell, Joseph E.; Rajagopal, Jayaraj; Rojas, Mauricio; Rozenblatt-Rosen, Orit; Seibold, Max A.; Sheppard, Dean; Shepherd, Douglas P.; Sin, Don D.; Timens, Wim; Tsankov, Alexander M.; Whitsett, Jeffrey; Xu, Yan; Banovich, Nicholas E.; Barbry, Pascal; Duong, Thu Elizabeth; Falk, Christine S.; Meyer, Kerstin B.; Kropski, Jonathan A.; Pe'er, Dana; Schiller, Herbert B.; Tata, Purushothama Rao; Schultze, Joachim L.; Teichmann, Sara A.; Misharin, Alexander, V; Nawijn, Martijn C.; Luecken, Malte D.; Theis, Fabian J.; Chen, Yuexin; Hagood, James S.; Agami, Ahmed; Horvath, Peter; Lundeberg, Joakim; Marquette, Charles-Hugo; Pryhuber, Gloria; Samakovlis, Chistos; Sun, Xin; Ware, Lorraine B.; Zhang, Kun 分享 收藏
Predicting cellular responses to complex perturbations in high-throughput screens 在高通量筛选中预测细胞对复杂扰动的反应 Lotfollahi, Mohammad; Susmelj, Anna Klimovskaia; De Donno, Carlo; Hetzel, Leon; Ji, Yuge; Ibarra, Ignacio L.; Srivatsan, Sanjay R.; Naghipourfar, Mohsen; Daza, Riza M.; Martin, Beth; Shendure, Jay; McFaline-Figueroa, Jose L.; Boyeau, Pierre; Wolf, F. Alexander; Yakubova, Nafissa; Guennemann, Stephan; Trapnell, Cole; Lopez-Paz, David; Theis, Fabian J. 分享 收藏
Single-cell RNA sequencing uncovers heterogeneous transcriptional signatures in tumor-infiltrated dendritic cells in prostate cancer 单细胞RNA测序揭示前列腺癌肿瘤浸润树突状细胞中的异质转录特征 Feriz, Adib Miraki; Khosrojerdi, Arezou; Lotfollahi, Mohammad; Shamsaki, Neusha; GhasemiGol, Mohammad; HosseiniGol, Edris; Fereidouni, Mohammad; Rohban, Mohammad Hossein; Sebzari, Ahmad Reza; Saghafi, Samira; Leone, Patrizia; Silvestris, Nicola; Safarpour, Hossein; Racanelli, Vito 分享 收藏
The scverse project provides a computational ecosystem for single-cell omics data analysis scverse项目为单细胞组学数据分析提供了一个计算生态系统 Virshup, Isaac; Bredikhin, Danila; Heumos, Lukas; Palla, Giovanni; Sturm, Gregor; Gayoso, Adam; Kats, Ilia; Koutrouli, Mikaela; Berger, Bonnie; Pe'er, Dana; Regev, Aviv; Teichmann, Sarah; Finotello, Francesca; Wolf, F. Alexander; Yosef, Nir; Stegle, Oliver; Theis, Fabian; Angerer, Philipp; Bergen, Volker; Boyeau, Pierre D.; Buettner, Maren; Eraslan, Gokcen; Fischer, David; Frank, Max C.; Hong, Justin; Klein, Michal; Lange, Marius; Lopez, Romain; Lotfollahi, Mohammad; Luecken, Malte; Ramirez, Fidel A.; Regier, Jeffrey; Rybakov, Sergei; Schaar, Anna; Valiollah Pour Amiri, Valeh; Weiler, Philipp J.; Xing, Galen 分享 收藏
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A Python library for probabilistic analysis of single-cell omics data 用于单细胞组学数据概率分析的Python库 Gayoso, Adam; Lopez, Romain; Xing, Galen; Boyeau, Pierre; Amiri, Valeh Valiollah Pour; Hong, Justin; Wu, Katherine; Jayasuriya, Michael; Mehlman, Edouard; Langevin, Maxime; Liu, Yining; Samaran, Jules; Misrachi, Gabriel; Nazaret, Achille; Clivio, Oscar; Xu, Chenling; Ashuach, Tal; Gabitto, Mariano; Lotfollahi, Mohammad; Svensson, Valentine; Beltrame, Eduardo da Veiga; Kleshchevnikov, Vitalii; Talavera-Lopez, Carlos; Pachter, Lior; Theis, Fabian J.; Streets, Aaron; Jordan, Michael I.; Regier, Jeffrey; Yosef, Nir 分享 收藏
Squidpy: a scalable framework for spatial omics analysis Squidpy: 一个可扩展的空间组学分析框架 Palla, Giovanni; Spitzer, Hannah; Klein, Michal; Fischer, David; Schaar, Anna Christina; Kuemmerle, Louis Benedikt; Rybakov, Sergei; Ibarra, Ignacio L.; Holmberg, Olle; Virshup, Isaac; Lotfollahi, Mohammad; Richter, Sabrina; Theis, Fabian J. 分享 收藏
Mapping single-cell data to reference atlases by transfer learning 通过迁移学习将单细胞数据映射到参考地图集 Lotfollahi, Mohammad; Naghipourfar, Mohsen; Luecken, Malte D.; Khajavi, Matin; Buettner, Maren; Wagenstetter, Marco; Avsec, Ziga; Gayoso, Adam; Yosef, Nir; Interlandi, Marta; Rybakov, Sergei; Misharin, Alexander, V; Theis, Fabian J. 分享 收藏
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