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Cell-type specific defects in PTEN-mutant cortical organoids converge on abnormal circuit activity Pigoni, Martina; Uzquiano, Ana; Paulsen, Bruna; Kedaigle, Amanda J.; Yang, Sung Min; Symvoulidis, Panagiotis; Adiconis, Xian; Velasco, Silvia; Sartore, Rafaela; Kim, Kwanho; Tucewicz, Ashley; Tropp, Sarah Yoshimi; Tsafou, Kalliopi; Jin, Xin; Barrett, Lindy; Chen, Fei; Boyden, Edward S.; Regev, Aviv; Levin, Joshua Z.; Arlotta, Paola 分享 收藏
The effect of background noise and its removal on the analysis of single-cell expression data Janssen, Philipp; Kliesmete, Zane; Vieth, Beate; Adiconis, Xian; Simmons, Sean; Marshall, Jamie; McCabe, Cristin; Heyn, Holger; Levin, Joshua Z.; Enard, Wolfgang; Hellmann, Ines 分享 收藏
Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types Ximerakis, Methodios; Holton, Kristina M.; Giadone, Richard M.; Ozek, Ceren; Saxena, Monika; Santiago, Samara; Adiconis, Xian; Dionne, Danielle; Nguyen, Lan; Shah, Kavya M.; Goldstein, Jill M.; Gasperini, Caterina; Gampierakis, Ioannis A.; Lipnick, Scott L.; Simmons, Sean K.; Buchanan, Sean M.; Wagers, Amy J.; Regev, Aviv; Levin, Joshua Z.; Rubin, Lee L. 分享 收藏
Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing Simmons, Sean K.; Lithwick-Yanai, Gila; Adiconis, Xian; Oberstrass, Florian; Iremadze, Nika; Geiger-Schuller, Kathryn; Thakore, Pratiksha, I; Frangieh, Chris J.; Barad, Omer; Almogy, Gilad; Rozenblatt-Rosen, Orit; Regev, Aviv; Lipson, Doron; Levin, Joshua Z. 分享 收藏
Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity Sorek, Matan; Oweis, Walaa; Nissim-Rafinia, Malka; Maman, Moria; Simon, Shahar; Hession, Cynthia C.; Adiconis, Xian; Simmons, Sean K.; Sanjana, Neville E.; Shi, Xi; Lu, Congyi; Pan, Jen Q.; Xu, Xiaohong; Pouladi, Mahmoud A.; Ellerby, Lisa M.; Zhang, Feng; Levin, Joshua Z.; Meshorer, Eran 分享 收藏
Reduction of mNAT1/hNAT2 Contributes to Cerebral Endothelial Necroptosis and Aβ Accumulation in Alzheimer's Disease mNAT1/hNAT2的减少有助于阿尔茨海默氏病的脑内皮程序性坏死和a β 积累 Zou, Chengyu; Mifflin, Lauren; Hu, Zhirui; Zhang, Tian; Shan, Bing; Wang, Huibing; Xing, Xin; Zhu, Hong; Adiconis, Xian; Levin, Joshua Z.; Li, Fupeng; Liu, Chuan-Fa; Liu, Jun S.; Yuan, Junying 分享 收藏
Systematic comparison of single-cell and single-nucleus RNA-sequencing methods (vol 17, pg 891, 2020) Ding, Jiarui; Adiconis, Xian; Simmons, Sean K.; Kowalczyk, Monika S.; Hession, Cynthia C.; Marjanovic, Nemanja D.; Hughes, Travis K.; Wadsworth, Marc H.; Burks, Tyler; Nguyen, Lan T.; Kwon, John Y. H.; Barak, Boaz; Ge, William; Kedaigle, Amanda J.; Carroll, Shaina; Li, Shuqiang; Hacohen, Nir; Rozenblatt-Rosen, Orit; Shalek, Alex K.; Villani, Alexandra-Chloe; Regev, Aviv; Levin, Joshua Z. 分享 收藏
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects Mereu, Elisabetta; Lafzi, Atefeh; Moutinho, Catia; Ziegenhain, Christoph; McCarthy, Davis J.; Alvarez-Varela, Adrian; Batlle, Eduard; Sagar; Gruen, Dominic; Lau, Julia K.; Boutet, Stephane C.; Sanada, Chad; Ooi, Aik; Jones, Robert C.; Kaihara, Kelly; Brampton, Chris; Talaga, Yasha; Sasagawa, Yohei; Tanaka, Kaori; Hayashi, Tetsutaro; Braeuning, Caroline; Fischer, Cornelius; Sauers, Sascha; Trefzer, Timo; Conrad, Christian; Adiconis, Xian; Nguyen, Lan T.; Regev, Aviv; Levin, Joshua Z.; Parekh, Swati; Janjic, Aleksandar; Wange, Lucas E.; Bagnoli, Johannes W.; Enard, Wolfgang; Gut, Marta; Sandberg, Rickard; Nikaido, Itoshi; Gut, Ivo; Stegle, Oliver; Heyn, Holger 分享 收藏
Systematic comparison of single-cell and single-nucleus RNA-sequencing methods 单细胞和单核RNA测序方法的系统比较 Ding, Jiarui; Adiconis, Xian; Simmons, Sean K.; Kowalczyk, Monika S.; Hession, Cynthia C.; Marjanovic, Nemanja D.; Hughes, Travis K.; Wadsworth, Marc H.; Burks, Tyler; Nguyen, Lan T.; Kwon, John Y. H.; Baraks, Boaz; Ge, William; Kedaigle, Amanda J.; Carroll, Shaina; Li, Shuqiang; Hacohen, Nir; Rozenblatt-Rosen, Orit; Shalek, Alex K.; Villani, Alexandra-Chloe; Regev, Aviv; Levin, Joshua Z. 分享 收藏
Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes Tran, Nicholas M.; Shekhar, Karthik; Whitney, Irene E.; Jacobi, Anne; Benhar, Inbal; Hong, Guosong; Yan, Wenjun; Adiconis, Xian; Arnold, McKinzie E.; Lee, Jung Min; Levin, Joshua Z.; Lin, Dingchang; Wang, Chen; Lieber, Charles M.; Regev, Aviv; He, Zhigang; Sanes, Joshua R. 分享 收藏
Comprehensive comparative analysis of 5′-end RNA-sequencing methods (vol 15, pg 505, 2018) Adiconis, Xian; Haber, Adam L.; Simmons, Sean K.; Moonshine, Ami Levy; Ji, Zhe; Busby, Michele A.; Shi, Xi; Jacques, Justin; Lancaster, Madeline A.; Pan, Jen Q.; Regev, Aviv; Levin, Joshua Z. 分享 收藏
Comprehensive comparative analysis of 5'-end RNA-sequencing methods 5' 端RNA测序方法的综合比较分析 Adiconis, Xian; Haber, Adam L.; Simmons, Sean K.; Moonshine, Ami Levy; Ji, Zhe; Busby, Michele A.; Shi, Xi; Jacques, Justin; Lancaster, Madeline A.; Pan, Jen Q.; Regev, Aviv; Levin, Joshua Z. 分享 收藏
Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons 3D培养条件对干细胞衍生神经元转录组谱的影响 Tekin, Halil; Simmons, Sean; Cummings, Beryl; Gao, Linyi; Adiconis, Xian; Hession, Cynthia C.; Ghoshal, Ayan; Dionne, Danielle; Choudhury, Sourav R.; Yesilyurt, Volkan; Sanjana, Neville E.; Shi, Xi; Lu, Congyi; Heidenreich, Matthias; Pan, Jen Q.; Levin, Joshua Z.; Zhang, Feng 分享 收藏
RIPK1 mediates a disease-associated microglial response in Alzheimer's disease RIPK1介导阿尔茨海默病中与疾病相关的小胶质细胞反应 Ofengeim, Dimitry; Mazzitelli, Sonia; Ito, Yasushi; DeWitt, Judy Park; Mifflin, Lauren; Zou, Chengyu; Das, Sudeshna; Adiconis, Xian; Chen, Hongbo; Zhu, Hong; Kelliher, Michelle A.; Levin, Joshua Z.; Yuan, Junying 分享 收藏
Comparative analysis of RNA sequencing methods for degraded or low-input samples (vol 10, pg 623, 2013) Adiconis, Xian; Borges-Rivera, Diego; Satija, Rahul; DeLuca, David S.; Busby, Michele A.; Berlin, Aaron M.; Sivachenko, Andrey; Thompson, Dawn Anne; Wysoker, Alec; Fennell, Timothy; Gnirke, Andreas; Pochet, Nathalie; Regev, Aviv; Levin, Joshua Z. 分享 收藏
Comparative analysis of RNA sequencing methods for degraded or low-input samples Adiconis, Xian; Borges-Rivera, Diego; Satija, Rahul; DeLuca, David S.; Busby, Michele A.; Berlin, Aaron M.; Sivachenko, Andrey; Thompson, Dawn Anne; Wysoker, Alec; Fennell, Timothy; Gnirke, Andreas; Pochet, Nathalie; Regev, Aviv; Levin, Joshua Z. 分享 收藏
Full-length transcriptome assembly from RNA-Seq data without a reference genome 没有参考基因组的rna-seq数据的全长转录组组装 Grabherr, Manfred G.; Haas, Brian J.; Yassour, Moran; Levin, Joshua Z.; Thompson, Dawn A.; Amit, Ido; Adiconis, Xian; Fan, Lin; Raychowdhury, Raktima; Zeng, Qiandong; Chen, Zehua; Mauceli, Evan; Hacohen, Nir; Gnirke, Andreas; Rhind, Nicholas; di Palma, Federica; Birren, Bruce W.; Nusbaum, Chad; Lindblad-Toh, Kerstin; Friedman, Nir; Regev, Aviv 分享 收藏
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells Rabani, Michal; Levin, Joshua Z.; Fan, Lin; Adiconis, Xian; Raychowdhury, Raktima; Garber, Manuel; Gnirke, Andreas; Nusbaum, Chad; Hacohen, Nir; Friedman, Nir; Amit, Ido; Regev, Aviv 分享 收藏
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