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Shuangjia Zheng

aureka biotechnologies

29H指数
151论文数
5.1K被引数
收录论文 42
发表时间
A blinded, prospective benchmark of in silico antibody discovery anchored to experimental affinity and developability一项基于实验亲和力与可开发性的模拟抗体发现的盲法前瞻性基准研究
err2026-08-19
err0
errOAAI
errM. Frank Erasmus; Daniel Bedinger; Elizabeth Hopkins; Ginger Ferguson; Justine Strickler; Christilyn P. Graff; Samantha R. Summers; Stacy L. Capehart; Joshua D. Slocum; Crystal Richardson; Sumit Kumar; Zhifei Sun; Yujie Shang; Jixian Zhang; Ming Gu; Lixia Yi; Alon Wellner; Shuangjia Zheng; Wei Lu; Pietro Sormanni; Matthew Greenig; Haiping Zhang; Brendan T. Mann; Mahdi Baghbanzadeh; Ali Rahnavard; Gregory L. Moore; Huaiyu Sun; Ying Ding; Alex Nisthal; Jitendra Kanodia; Matthew J. Bernett; Aurélien Pélissier; Yanjun Shao; Maria Rodriguez Martinez; Karthik Ramesh; Horacio Nastri; Andreas Evers; Anhar Abdelatif; Andrew J. Bordner; Mykola Bordyuh; Lim Heo; Brian A. Kidd; H. Serhat Tetikol; Shuai Wei; Jung-Eun Shin; Ryan Peckner; Leigh Manley; Ajitesh Lunge; Yashas Devasurmutt; Bora Guloglu; Liviu Copoiu; Miles McGibbon; Monica L. Fernandez-Quintero; Nitesh Mishra; Sean M. Callaghan; Olivia M. Swanson; Daniel L. V. Bader; James A. Ferguson; Sai S. R. Raghavan; Benjamin Nemoz; Colleen A. Maillie; Charles Bowman; Bryan Briney; Andrew B. Ward; Paolo Marcatili; Rahmad Akbar; Bing He; Fandi Wu; Jianhua Yao; Bin Hu; Michal Kucer; Kaetlyn Rose Gibson; Rahul Somasundaram; Li-Wei Hung; Tomasz Kaszuba; Daved H. Fremont; Hyeongsun Jeong; Vinodh Babu Kurella; Shipra Malhotra; Satyendra Kumar; Yanyun Liu; Lingling Xu; Joshua Misa; Alexander Nicholas St. John; Jeff Vogt; Fátima A. Dávila-Hernández; Da Xu; Michael Chungyoun; Zyaja D. Huggan; Jeffrey J. Gray; Jonathan Parkinson; Young Su Ko; Wei Wang; Franziska Geiger; Jonathon D. Ziegler; Nikhil Haas; Chance Challacombe; Ahmad Qamar; Akshita Singh; Yi-Ching Tang; Zhiqiang An; Xiaoqian Jiang; Yejin Kim; Xinyan Zhao; Erik Swanson; Jürgen Klattig; Karsten Winkler; Tschimegma Bataa; Volker Sandig; Lilian Denzler; Chunan Liu; Randall J. Brezski; Laura Spector; Katheryn Perea-Schmittle; Sara D’Angelo; Fortunato Ferrara; Andrew R. M. Bradbury
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A geometric foundation model for enzyme retrieval with evolutionary insights具有进化见解的酶检索的几何基础模型
err2026-02-12
err0
PREAI
errYong Liu; Chenqing Hua; Menglong Xu; Tao Zeng; Jiahua Rao; Zhongyue Zhang; Ruibo Wu; Jing-Ke Weng; Connor W. Coley; Shuangjia Zheng
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CACHE Challenge #3: Targeting the Nsp3 Macrodomain of SARS-CoV-2缓存挑战 #3: 以SARS-CoV-2的Nsp3宏域为目标
err2026-01-21
err0
errOAAI
errOleksandra Herasymenko; Madhushika Silva; Galen J. Correy; Abd Al-Aziz A. Abu-Saleh; Suzanne Ackloo; Cheryl Arrowsmith; Alan Ashworth; Fuqiang Ban; Hartmut Beck; Kevin P. Bishop; Hugo J. Bohórquez; Albina Bolotokova; Marko Breznik; Irene Chau; Yu Chen; Artem Cherkasov; Wim Dehaen; Dennis Della Corte; Katrin Denzinger; Niklas P. Doering; Kristina Edfeldt; Aled Edwards; Darren Fayne; Francesco Gentile; Elisa Gibson; Ozan Gokdemir; Anders Gunnarsson; Judith Günther; John J. Irwin; Jan Halborg Jensen; Rachel J. Harding; Alexander Hillisch; Laurent Hoffer; Anders Hogner; Ashley Hutchinson; Shubhangi Kandwal; Andrea Karlova; Kushal Koirala; Sergei Kotelnikov; Dima Kozakov; Juyong Lee; Soowon Lee; Uta Lessel; Sijie Liu; Xuefeng Liu; Peter Loppnau; Jens Meiler; Rocco Moretti; Yurii S. Moroz; Charuvaka Muvva; Tudor I. Oprea; Brooks Paige; Amit Pandit; Keunwan Park; Gennady Poda; Mykola V. Protopopov; Vera Pütter; Rahul Ravichandran; Didier Rognan; Edina Rosta; Yogesh Sabnis; Thomas Scott; Almagul Seitova; Purshotam Sharma; François Sindt; Minghu Song; Casper Steinmann; Rick Stevens; Valerij Talagayev; Valentyna V. Tararina; Olga Tarkhanova; Damon Tingey; John F. Trant; Dakota Treleaven; Alexander Tropsha; Patrick Walters; Jude Wells; Yvonne Westermaier; Gerhard Wolber; Lars Wortmann; Shuangjia Zheng; James S. Fraser; Matthieu Schapira
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Deciphering RNA–ligand binding specificity with GerNA-Bind用gerna-bind破译RNA-配体结合特异性
err2025-12-12
err0
PREAI
errYunpeng Xia; Jiayi Li; Yi-Ting Chu; Jiahua Rao; Jing Chen; Chenqing Hua; Dong-Jun Yu; Xiu-Cai Chen; Shuangjia Zheng
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Benchmarking all-atom biomolecular structure prediction with FoldBench使用FoldBench对所有原子生物分子结构预测进行基准测试
err2025-12-04
err0
errOAAI
errSheng Xu; Qiantai Feng; Lifeng Qiao; Hao Wu; Tao Shen; Yu Cheng; Shuangjia Zheng; Siqi Sun
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ECloudGen: leveraging electron clouds as a latent variable to scale up structure-based molecular designECloudGen:利用电子云作为潜在变量,以扩展基于结构的分子设计规模
err2025-10-15
err0
PREAI
errOdin Zhang; Jieyu Jin; Zhenxing Wu; Jintu Zhang; Po Yuan; Yuntao Yu; Haitao Lin; Haiyang Zhong; Xujun Zhang; Chenqing Hua; Weibo Zhao; Zhengshuo Zhang; Kejun Ying; Yufei Huang; Huifeng Zhao; Yu Kang; Peichen Pan; Jike Wang; Dong Guo; Shuangjia Zheng; Chang-Yu Hsieh; Tingjun Hou
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A 3D pocket-aware lead optimization model with knowledge guidance and its application for discovery of new glutaminyl cyclase inhibitors一种基于知识引导的3D口袋感知先导化合物优化模型及其在新谷氨酰胺环化酶抑制剂发现中的应用
err2025-07-02
err0
errOAAI
errAnjie Qiao; Yuting Chen; Junjie Xie; Weifeng Huang; Hao Zhang; Qirui Deng; Jiahua Rao; Ji Deng; Fanbo Meng; Zhen Wang; Mingyuan Xu; Hongming Chen; Jiancong Xie; Shuangjia Zheng; Yuedong Yang; Guo-Bo Li; Jinping Lei
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CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13CACHE挑战赛#2:靶向SARS-CoV-2解旋酶Nsp13的RNA位点
err2025-06-20
err0
PREAI
errOleksandra Herasymenko; Madhushika Silva; Abd Al-Aziz A. Abu-Saleh; Ayaz Ahmad; Jesus Alvarado-Huayhuaz; Oscar E. A. Arce; Roly J. Armstrong; Cheryl Arrowsmith; Kelly E. Bachta; Hartmut Beck; Denes Berta; Mateusz K. Bieniek; Vincent Blay; Albina Bolotokova; Philip E. Bourne; Marko Breznik; Peter J. Brown; Aaron D. G. Campbell; Emanuele Carosati; Irene Chau; Daniel J. Cole; Ben Cree; Wim Dehaen; Katrin Denzinger; Karina dos Santos Machado; Ian Dunn; Prasannavenkatesh Durai; Kristina Edfeldt; Aled Edwards; Darren Fayne; Daniel Felfoldi; Kallie Friston; Pegah Ghiabi; Elisa Gibson; Judith Günther; Anders Gunnarsson; Alexander Hillisch; Douglas R. Houston; Jan Halborg Jensen; Rachel J. Harding; Kate S. Harris; Laurent Hoffer; Anders Hogner; Joshua T. Horton; Scott Houliston; Judd F. Hultquist; Ashley Hutchinson; John J. Irwin; Marko Jukič; Shubhangi Kandwal; Andrea Karlova; Vittorio L. Katis; Ryan P. Kich; Dmitri Kireev; David Koes; Nicole L. Inniss; Uta Lessel; Sijie Liu; Peter Loppnau; Wei Lu; Sam Martino; Miles McGibbon; Jens Meiler; Akhila Mettu; Sam Money-Kyrle; Rocco Moretti; Yurii S. Moroz; Charuvaka Muvva; Joseph A. Newman; Leon Obendorf; Brooks Paige; Amit Pandit; Keunwan Park; Sumera Perveen; Rachael Pirie; Gennady Poda; Mykola Protopopov; Vera Pütter; Federico Ricci; Natalie J. Roper; Edina Rosta; Margarita Rzhetskaya; Yogesh Sabnis; Karla J. F. Satchell; Frederico Schmitt Kremer; Thomas Scott; Almagul Seitova; Casper Steinmann; Valerij Talagayev; Olga O. Tarkhanova; Natalie J. Tatum; Dakota Treleaven; Adriano Velasque Werhli; W. Patrick Walters; Xiaowen Wang; Jude Wells; Geoffrey Wells; Yvonne Westermaier; Gerhard Wolber; Lars Wortmann; Jixian Zhang; Zheng Zhao; Shuangjia Zheng; Matthieu Schapira
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Geometric-aware deep learning enables discovery of bifunctional ligand-based liposomes for tumor targeting therapy几何感知深度学习实现了基于双功能配体的脂质体肿瘤靶向治疗。
err2025-04-01
err0
PREAI
errXia, Jiaxuan; Gan, Zicheng; Zhang, Jixian; Dong, Meichen; Liu, Shengyao; Cui, Bangchun; Guo, Pengcheng; Pang, Zhiqing; Lu, Tun; Gu, Ning; Ouyang, Defang; Li, Chengtao; Zheng, Shuangjia; Wang, Jianxin
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Deep generative design of RNA aptamers using structural predictions使用结构预测的RNA适体的深度生成设计
err2024-11-06
err0
PREAI
errWong, Felix; He, Dongchen; Krishnan, Aarti; Hong, Liang; Wang, Alexander Z.; Wang, Jiuming; Hu, Zhihang; Omori, Satotaka; Li, Alicia; Rao, Jiahua; Yu, Qinze; Jin, Wengong; Zhang, Tianqing; Ilia, Katherine; Chen, Jack X.; Zheng, Shuangjia; King, Irwin; Li, Yu; Collins, James J.
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CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson's Disease Associated Protein
err2024-11-05
err4
errOAAI
errLi, Fengling; Ackloo, Suzanne; Arrowsmith, Cheryl H.; Ban, Fuqiang; Barden, Christopher J.; Beck, Hartmut; Beranek, Jan; Berenger, Francois; Bolotokova, Albina; Bret, Guillaume; Breznik, Marko; Carosati, Emanuele; Chau, Irene; Chen, Yu; Cherkasov, Artem; Della Corte, Dennis; Denzinger, Katrin; Dong, Aiping; Draga, Sorin; Dunn, Ian; Edfeldt, Kristina; Edwards, Aled; Eguida, Merveille; Eisenhuth, Paul; Friedrich, Lukas; Fuerll, Alexander; Gardiner, Spencer S.; Gentile, Francesco; Ghiabi, Pegah; Gibson, Elisa; Glavatskikh, Marta; Gorgulla, Christoph; Guenther, Judith; Gunnarsson, Anders; Gusev, Filipp; Gutkin, Evgeny; Halabelian, Levon; Harding, Rachel J.; Hillisch, Alexander; Hoffer, Laurent; Hogner, Anders; Houliston, Scott; Irwin, John J.; Isayev, Olexandr; Ivanova, Aleksandra; Jacquemard, Celien; Jarrett, Austin J.; Jensen, Jan H.; Kireev, Dmitri; Kleber, Julian; Koby, S. Benjamin; Koes, David; Kumar, Ashutosh; Kurnikova, Maria G.; Kutlushina, Alina; Lessel, Uta; Liessmann, Fabian; Liu, Sijie; Lu, Wei; Meiler, Jens; Mettu, Akhila; Minibaeva, Guzel; Moretti, Rocco; Morris, Connor J.; Narangoda, Chamali; Noonan, Theresa; Obendorf, Leon; Pach, Szymon; Pandit, Amit; Perveen, Sumera; Poda, Gennady; Polishchuk, Pavel; Puls, Kristina; Puetter, Vera; Rognan, Didier; Roskams-Edris, Dylan; Schindler, Christina; Sindt, Francois; Spiwok, Vojtech; Steinmann, Casper; Stevens, Rick L.; Talagayev, Valerij; Tingey, Damon; Vu, Oanh; Walters, W. Patrick; Wang, Xiaowen; Wang, Zhenyu; Wolber, Gerhard; Wolf, Clemens Alexander; Wortmann, Lars; Zeng, Hong; Zepeda, Carlos A.; Zhang, Kam Y. J.; Zhang, Jixian; Zheng, Shuangjia; Schapira, Matthieu
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Developing BioNavi for Hybrid Retrosynthesis Planning
errJACS AU
IF8.7
err2024-07-03
err3
errOAAI
errZeng, Tao; Jin, Zhehao; Zheng, Shuangjia; Yu, Tao; Wu, Ruibo
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Cross-Modal Graph Contrastive Learning with Cellular Images基于细胞图像的跨模态图对比学习
err2024-06-21
err0
errOAAI
errZheng, Shuangjia; Rao, Jiahua; Zhang, Jixian; Zhou, Lianyu; Xie, Jiancong; Cohen, Ethan; Lu, Wei; Li, Chengtao; Yang, Yuedong
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DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative modelDynamicBind: 用深度等变生成模型预测配体特异性蛋白质-配体复合物结构
err2024-02-05
err14
errOAAI
errLu, Wei; Zhang, Jixian; Huang, Weifeng; Zhang, Ziqiao; Jia, Xiangyu; Wang, Zhenyu; Shi, Leilei; Li, Chengtao; Wolynes, Peter G.; Zheng, Shuangjia
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Integrating supercomputing and artificial intelligence for life science
err2022-12-01
err1
errOAAI
errRao, Jiahua; Zheng, Shuangjia; Yang, Yuedong
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Quantitative evaluation of explainable graph neural networks for molecular property prediction
err2022-12-01
err20
errOAAI
errRao, Jiahua; Zheng, Shuangjia; Lu, Yutong; Yang, Yuedong
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DRlinker: Deep Reinforcement Learning for Optimization in Fragment Linking DesignDRlinker: 用于片段链接设计优化的深度强化学习
err2022-11-21
err30
PREAI
errTan, Youhai; Dai, Lingxue; Huang, Weifeng; Guo, Yinfeng; Zheng, Shuangjia; Lei, Jinping; Chen, Hongming; Yang, Yuedong
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