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Julia Zeitlinger

stowers institute for medical research

42H指数
99论文数
1.9W被引数
收录论文 39
发表时间
Positional interpretation of cis-regulatory code and nucleosome organization with deep learning models利用深度学习模型对顺式调控代码和核小体组织进行位置解释
err2026-07-04
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errOAAI
errCharles E. McAnany; Melanie Weilert; Grishma Mehta; Fahad Kamulegeya; Jennifer M. Gardner; Jacob Schreiber; Anshul Kundaje; Julia Zeitlinger
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Interpreting regulatory mechanisms of Hippo signaling through a deep learning sequence model通过深度学习序列模型解释Hippo信号通路调控机制
err2025-04-01
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errOAAI
errDalal, Khyati; McAnany, Charles; Weilert, Melanie; McKinney, Mary Cathleen; Krueger, Sabrina; Zeitlinger, Julia
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Co-option of the trichome-forming network initiated the evolution of a morphological novelty in Drosophila eugracilis
err2024-11-01
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PREAI
errRice, Gavin; Gaitan-Escudero, Tatiana; Charles-Obi, Kenechukwu; Zeitlinger, Julia; Rebeiz, Mark
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The multi-lineage transcription factor ISL1 controls cardiomyocyte cell fate through interaction with NKX2.5
err2023-11-01
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errMaven, Bonnie E. J.; Gifford, Casey A.; Weilert, Melanie; Gonzalez-Teran, Barbara; Huettenhain, Ruth; Pelonero, Angelo; Ivey, Kathryn N.; Samse-Knapp, Kaitlen; Kwong, Wesley; Gordon, David; Mcgregor, Michael; Nishino, Tomohiro; Okorie, Eyuche; Rossman, Sage; Costa, Mauro W.; Krogan, Nevan J.; Zeitlinger, Julia; Srivastava, Deepak
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Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation
err2023-10-01
err16
errOAAI
errBrennan, Kaelan J.; Weilert, Melanie; Krueger, Sabrina; Pampari, Anusri; Liu, Hsiao-yun; Yang, Ally W. H.; Morrison, Jason A.; Hughes, Timothy R.; Rushlow, Christine A.; Kundaje, Anshul; Zeitlinger, Julia
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Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development
err2023-09-21
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errOAAI
errRamalingam, Vivekanandan; Yu, Xinyang; Slaughter, Brian D.; Unruh, Jay R.; Brennan, Kaelan J.; Onyshchenko, Anastasiia; Lange, Jeffrey J.; Natarajan, Malini; Buck, Michael; Zeitlinger, Julia
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Emerging questions in transcriptional regulation
err2023-04-01
err2
PREAI
errNora, Elphege P.; Aerts, Stein; Wittkopp, Patricia J.; Bussemaker, Harmen J.; Bulyk, Martha; Sinha, Saurabh; Zeitlinger, Julia; Crocker, Justin; Bass, Juan Ignacio Fuxman
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Off the deep end: What can deep learning do for the gene expression field?
err2023-01-01
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errOAAI
errRaicu, Ana -Maria; Fay, Justin C.; Rohner, Nicolas; Zeitlinger, Julia; Arnosti, David N.
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The SAGA core module is critical during Drosophila oogenesis and is broadly recruited to promoters
err2021-11-22
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errOAAI
errSoffers, Jelly H. M.; Alcantara, Sergio G-M; Li, Xuanying; Shao, Wanqing; Seidel, Christopher W.; Li, Hua; Zeitlinger, Julia; Abmayr, Susan M.; Workman, Jerry L.
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Base-resolution models of transcription-factor binding reveal soft motif syntax转录因子结合的碱基分辨模型揭示了软基序语法
err2021-02-18
err293
errOAAI
errAvsec, Ziga; Weilert, Melanie; Shrikumar, Avanti; Krueger, Sabrina; Alexandari, Amr; Dalal, Khyati; Fropf, Robin; McAnany, Charles; Gagneur, Julien; Kundaje, Anshul; Zeitlinger, Julia
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TATA and paused promoters active in differentiated tissues have distinct expression characteristics
err2021-02-05
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errOAAI
errRamalingam, Vivekanandan; Natarajan, Malini; Johnston, Jeff; Zeitlinger, Julia
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β-Catenin and Associated Proteins Regulate Lineage Differentiation in Ground State Mouse Embryonic Stem Cells
err2020-09-01
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errOAAI
errTao, Fang; Soffers, Jelly; Hu, Deqing; Chen, Shiyuan; Gao, Xin; Zhang, Ying; Zhao, Chongbei; Smith, Sarah E.; Unruh, Jay R.; Zhang, Da; Tsuchiya, Dai; Venkatraman, Aparna; Zhao, Meng; Li, Zhenrui; Qian, Pengxu; Parmely, Tari; He, Xi C.; Washburn, Michael; Florens, Laurence; Perry, John M.; Zeitlinger, Julia; Workman, Jerry; Li, Linheng
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A Role for FACT in RNA Polymerase II Promoter-Proximal Pausing
err2019-06-01
err43
errOAAI
errTettey, Theophilus T.; Gao, Xin; Shao, Wanqing; Li, Hua; Story, Benjamin A.; Chitsazan, Alex D.; Glaser, Robert L.; Goode, Zach H.; Seidel, Christopher W.; Conaway, Ronald C.; Zeitlinger, Julia; Blanchette, Marco; Conaway, Joan W.
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Suppression of m6A reader Ythdf2 promotes hematopoietic stem cell expansion (vol 28, pg 904, 2018)
err2018-08-27
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errOAAI
errLi, Zhenrui; Qian, Pengxu; Shao, Wanqing; Shi, Hailing; He, Xi C.; Gogol, Madelaine; Yu, Zulin; Wang, Yongfu; Qi, Meijie; Zhu, Yunfei; Perry, John M.; Zhang, Kai; Tao, Fang; Zhou, Kun; Hu, Deqing; Han, Yingli; Zhao, Chongbei; Alexander, Richard; Xu, Hanzhang; Chen, Shiyuan; Peak, Allison; Hall, Kathyrn; Peterson, Michael; Perera, Anoja; Haug, Jeffrey S.; Parmely, Tani; Li, Hua; Shen, Bin; Zeitlinger, Julia; He, Chuan; Li, Linheng
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Suppression of m6A reader Ythdf2 promotes hematopoietic stem cell expansion抑制m6A阅读器Ythdf2促进造血干细胞扩增
err2018-07-31
err219
errOAAI
errLi, Zhenrui; Qian, Pengxu; Shao, Wanqing; Shi, Hailing; He, Xi C.; Gogol, Madelaine; Yu, Zulin; Wang, Yongfu; Qi, Meijie; Zhu, Yunfei; Perry, John M.; Zhang, Kai; Tao, Fang; Zhou, Kun; Hu, Deqing; Han, Yingli; Zhao, Chongbei; Alexander, Richard; Xu, Hanzhang; Chen, Shiyuan; Peak, Allison; Hall, Kathyrn; Peterson, Michael; Perera, Anoja; Haug, Jeffrey S.; Parmely, Tari; Li, Hua; Shen, Bin; Zeitlinger, Julia; He, Chuan; Li, Linheng
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Capicua controls Toll/IL-1 signaling targets independently of RTK regulation
err2018-02-05
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errOAAI
errPapagianni, Aikaterini; Fores, Marta; Shao, Wanqing; He, Shuonan; Koenecke, Nina; Jose Andreu, Maria; Samper, Nuria; Paroush, Ze'ev; Gonzalez-Crespo, Sergio; Zeitlinger, Julia; Jimenez, Gerardo
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