Nicolas Bray - Publications, H-index & Citations

Nicolas Bray

University of California Berkeley

25H指数

50论文数

2.7W被引数

收录论文 17

发表时间

The impact of package selection and versioning on single-cell RNA-seq analysis 包选择和版本化对单细胞RNA测序分析的影响

Cell Systems

IF7.7

2026-03-27

PREAI

Joseph M. Rich; Lambda Moses; Pétur Helgi Einarsson; Kayla Jackson; Laura Luebbert; A. Sina Booeshaghi; Sindri Antonsson; Delaney K. Sullivan; Nicolas Bray; Páll Melsted; Lior Pachter

kallisto, bustools and kb-python for quantifying bulk, single-cell and single-nucleus RNA-seq

NATURE PROTOCOLS

IF16

2024-10-10

PREAI

Sullivan, Delaney K.; Min, Kyung Hoi (Joseph); Hjorleifsson, Kristjan Eldjarn; Luebbert, Laura; Holley, Guillaume; Moses, Lambda; Gustafsson, Johan; Bray, Nicolas L.; Pimentel, Harold; Booeshaghi, A. Sina; Melsted, Pall; Pachter, Lior

Controlled Cycling and Quiescence Enables Efficient HDR in Engraftment-Enriched Adult Hematopoietic Stem and Progenitor Cells

CELL REPORTS

IF6.9

2020-09-01

OAAI

Shin, Jiyung J.; Schroeder, Markus S.; Caiado, Francisco; Wyman, Stacia K.; Bray, Nicolas L.; Bordi, Matteo; Dewitt, Mark A.; Vu, Jonathan T.; Kim, Won-Tae; Hockemeyer, Dirk; Manz, Markus G.; Corn, Jacob E.

Expression reflects population structure

PLOS GENETICS

IF3.7

2018-12-19

OAAI

Brown, Brielin C.; Bray, Nicolas L.; Pachter, Lior

Gene-level differential analysis at transcript-level resolution

GENOME BIOLOGY

IF9.4

2018-04-12

OAAI

Yi, Lynn; Pimentel, Harold; Bray, Nicolas L.; Pachter, Lior

Nanoparticle delivery of Cas9 ribonucleoprotein and donor DNA in vivo induces homology-directed DNA repair

NATURE BIOMEDICAL ENGINEERING

IF26.6

2017-10-02

637

OAAI

Lee, Kunwoo; Conboy, Michael; Park, Hyo Min; Jiang, Fuguo; Kim, Hyun Jin; Dewitt, Mark A.; Mackley, Vanessa A.; Chang, Kevin; Rao, Anirudh; Skinner, Colin; Shobha, Tamanna; Mehdipour, Melod; Liu, Hui; Huang, Wen-chin; Lan, Freeman; Bray, Nicolas L.; Li, Song; Corn, Jacob E.; Kataoka, Kazunori; Doudna, Jennifer A.; Conboy, Irina; Murthy, Niren

Disabling Cas9 by an anti-CRISPR DNA mimic

SCIENCE ADVANCES

IF12.5

2017-07-07

304

OAAI

Shin, Jiyung; Jiang, Fuguo; Liu, Jun-Jie; Bray, Nicolas L.; Rauch, Benjamin J.; Baik, Seung Hyun; Nogales, Eva; Bondy-Denomy, Joseph; Corn, Jacob E.; Doudna, Jennifer A.

Differential analysis of RNA-seq incorporating quantification uncertainty

NATURE METHODS

IF32.1

2017-06-05

1.1K

OAAI

Pimentel, Harold; Bray, Nicolas L.; Puente, Suzette; Melsted, Pall; Pachter, Lior

Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells

SCIENCE TRANSLATIONAL MEDICINE

IF14.6

2016-10-12

381

OAAI

DeWitt, Mark A.; Magis, Wendy; Bray, Nicolas L.; Wang, Tianjiao; Berman, Jennifer R.; Urbinati, Fabrizia; Heo, Seok-Jin; Mitros, Therese; Munoz, Denise P.; Boffelli, Dario; Kohn, Donald B.; Walters, Mark C.; Carroll, Dana; Martin, David I. K.; Corn, Jacob E.

Non-homologous DNA increases gene disruption efficiency by altering DNA repair outcomes

NATURE COMMUNICATIONS

IF15.7

2016-08-17

OAAI

Richardson, C. D.; Ray, G. J.; Bray, N. L.; Corn, J. E.

Near-optimal probabilistic RNA-seq quantification (vol 34, pg 525, 2016)

NATURE BIOTECHNOLOGY

IF41.7

2016-08-09

4.6K

OAAI

Bray, Nicolas L.; Pimentel, Harold; Melsted, Pall; Pachter, Lior

Near-optimal probabilistic RNA-seq quantification

NATURE BIOTECHNOLOGY

IF41.7

2016-04-04

1.8K

PREAI

Bray, Nicolas L.; Pimentel, Harold; Melsted, Pall; Pachter, Lior

A high- resolution atlas of nucleosome occupancy in yeast

NATURE GENETICS

IF31.8

2007-09-16

856

PREAI

Lee, William; Tillo, Desiree; Bray, Nicolas; Morse, Randall H.; Davis, Ronald W.; Hughes, Timothy R.; Nislow, Corey

A genome-wide map of conserved microRNA targets in C. elegans

CURRENT BIOLOGY

IF7.5

2006-03-01

452

OAAI

Lall, S; Grün, D; Krek, A; Chen, K; Wang, YL; Dewey, CN; Sood, P; Colombo, T; Bray, N; MacMenamin, P; Kao, HL; Gunsalus, KC; Pachter, L; Piano, F; Rajewsky, N

MAVID: Constrained ancestral alignment of multiple sequences

GENOME RESEARCH

IF5.5

2004-04-01

247

OAAI

Bray, N; Pachter, L

MAVID multiple alignment server

NUCLEIC ACIDS RESEARCH

IF13.1

2003-07-01

OAAI