Simon Kasif - Publications, H-index & Citations

Simon Kasif

Massachusetts General Hospital

49H指数

171论文数

3.8W被引数

收录论文 52

发表时间

Targeted in silico characterization of fusion transcripts in tumor and normal tissues via FusionInspector

CELL REPORTS METHODS

IF4.5

2023-05-01

OAAI

Haas, Brian J.; Dobin, Alexander; Ghandi, Mahmoud; Arsdale, Anne Van; Tickle, Timothy; Robinson, James T.; Gillani, Riaz; Kasif, Simon; Regev, Aviv

Interpretable network propagation with application to expanding the repertoire of human proteins that interact with SARS-CoV-2

GIGASCIENCE

IF3.9

2021-12-29

OAAI

Law, Jeffrey N.; Akers, Kyle; Tasnina, Nure; Della Santina, Catherine M.; Deutsch, Shay; Kshirsagar, Meghana; Klein-Seetharaman, Judith; Crovella, Mark; Rajagopalan, Padmavathy; Kasif, Simon; Murali, T. M.

High-throughput mediation analysis of human proteome and metabolome identifies mediators of post-bariatric surgical diabetes control

NATURE COMMUNICATIONS

IF15.7

2021-11-29

OAAI

Dreyfuss, Jonathan M.; Yuchi, Yixing; Dong, Xuehong; Efthymiou, Vissarion; Pan, Hui; Simonson, Donald C.; Vernon, Ashley; Halperin, Florencia; Aryal, Pratik; Konkar, Anish; Sebastian, Yinong; Higgs, Brandon W.; Grimsby, Joseph; Rondinone, Cristina M.; Kasif, Simon; Kahn, Barbara B.; Foster, Kathleen; Seeley, Randy; Goldfine, Allison; Djordjilovic, Vera; Patti, Mary Elizabeth

Analysis of brain region-specific co-expression networks reveals clustering of established and novel genes associated with Alzheimer disease

ALZHEIMERS RESEARCH & THERAPY

IF7.6

2020-09-02

OAAI

Lancour, Daniel; Dupuis, Josee; Mayeux, Richard; Haines, Jonathan L.; Pericak-Vance, Margaret A.; Schellenberg, Gerard C.; Crovella, Mark; Farrer, Lindsay A.; Kasif, Simon

Single-cell transcriptional networks in differentiating preadipocytes suggest drivers associated with tissue heterogeneity

NATURE COMMUNICATIONS

IF15.7

2020-04-30

OAAI

Ramirez, Alfred K.; Dankel, Simon N.; Rastegarpanah, Bashir; Cai, Weikang; Xue, Ruidan; Crovella, Mark; Tseng, Yu-Hua; Kahn, C. Ronald; Kasif, Simon

Membrane metallo-endopeptidase (Neprilysin) regulates inflammatory response and insulin signaling in white preadipocytes

MOLECULAR METABOLISM

IF6.6

2019-04-01

OAAI

Ramirez, Alfred K.; Dankel, Simon; Cai, Weikang; Sakaguchi, Masaji; Kasif, Simon; Kahn, C. Ronald

Integrative Analysis of Human Plasma Proteome/Metabolome Reveals Central Role for Phospholipid, Retinol, and Histidine Metabolism after Gastric Bypass

DIABETES

IF7.5

2018-07-01

PREAI

Dreyfuss, Jonathan; Yuchi, Yixing; Pan, Hui; Simonson, Donald C.; Vernon, Ashley H.; Aryal, Pratik; Kahn, Barbara; Foster, Kathleen; Kasif, Simon; Goldfine, Allison; Patti, Mary E.

One for all and all for One: Improving replication of genetic studies through network diffusion

PLOS GENETICS

IF3.7

2018-04-23

OAAI

Lancour, Daniel; Naj, Adam; Mayeux, Richard; Haines, Jonathan L.; Pericak-Vance, Margaret A.; Schellenberg, Gerard C.; Crovella, Mark; Farrer, Lindsay A.; Kasif, Simon

Integrating Extracellular Flux Measurements and Genome-Scale Modeling Reveals Differences between Brown and White Adipocytes

CELL REPORTS

IF6.9

2017-12-01

OAAI

Ramirez, Alfred K.; Lynes, Matthew D.; Shamsi, Farnaz; Xue, Ruidan; Tseng, Yu-Hua; Kahn, C. Ronald; Kasif, Simon; Dreyfuss, Jonathan M.

Defects in muscle branched-chain amino acid oxidation contribute to impaired lipid metabolism

MOLECULAR METABOLISM

IF6.6

2016-10-01

133

OAAI

Lerin, Carles; Goldfine, Allison B.; Boes, Tanner; Liu, Manway; Kasif, Simon; Dreyfuss, Jonathan M.; De Sousa-Coelho, Ana Luisa; Daher, Grace; Manoli, Irini; Sysol, Justin R.; Isganaitis, Elvira; Jessen, Niels; Goodyear, Laurie J.; Beebe, Kirk; Gall, Walt; Venditti, Charles P.; Patti, Mary-Elizabeth

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps

NUCLEIC ACIDS RESEARCH

IF13.1

2015-12-03

OAAI

Chang, Yi-Chien; Hu, Zhenjun; Rachlin, John; Anton, Brian P.; Kasif, Simon; Roberts, Richard J.; Steffen, Martin

Metabolic modeling of muscle metabolism identifies key reactions linked to insulin resistance phenotypes

MOLECULAR METABOLISM

IF6.6

2015-03-01

OAAI

Nogiec, Christopher; Burkart, Alison; Dreyfuss, Jonathan M.; Lerin, Carles; Kasif, Simon; Patti, Mary-Elizabeth

Identification of rare germline copy number variations over-represented in five human cancer types

MOLECULAR CANCER

IF33.9

2015-02-03

OAAI

Park, Richard W.; Kim, Tae-Min; Kasif, Simon; Park, Peter J.

Hypermutable DNA chronicles the evolution of human colon cancer

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2014-04-21

OAAI

Naxerova, Kamila; Brachtel, Elena; Salk, Jesse J.; Seese, Aaron M.; Power, Karen; Abbasi, Bardia; Snuderl, Matija; Chiang, Sarah; Kasif, Simon; Jain, Rakesh K.

Systems Biology Characterization of Engineered Tissues

ANNUAL REVIEW OF BIOMEDICAL ENGINEERING

IF0

2013-07-11

PREAI

Rajagopalan, Padmavathy; Kasif, Simon; Murali, T. M.

An Aberrant Transcription Factor Network Essential for Wnt Signaling and Stem Cell Maintenance in Glioblastoma

CELL REPORTS

IF6.9

2013-05-01

230

OAAI

Rheinbay, Esther; Suva, Mario L.; Gillespie, Shawn M.; Wakimoto, Hiroaki; Patel, Anoop P.; Shahid, Mohammad; Oksuz, Ozgur; Rabkin, Samuel D.; Martuza, Robert L.; Rivera, Miguel N.; Louis, David N.; Kasif, Simon; Chi, Andrew S.; Bernstein, Bradley E.

Thousands of missed genes found in bacterial genomes and their analysis with COMBREX

BIOLOGY DIRECT

IF4.9

2012-01-01

OAAI

Wood, Derrick E.; Lin, Henry; Levy-Moonshine, Ami; Swaminathan, Rajiswari; Chang, Yi-Chien; Anton, Brian P.; Osmani, Lais; Steffen, Martin; Kasif, Simon; Salzberg, Steven L.

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes COMBREX: 一个加速原核基因组功能注释的项目

NUCLEIC ACIDS RESEARCH

IF13.1

2010-11-21

OAAI

Roberts, Richard J.; Chang, Yi-Chien; Hu, Zhenjun; Rachlin, John N.; Anton, Brian P.; Pokrzywa, Revonda M.; Choi, Han-Pil; Faller, Lina L.; Guleria, Jyotsna; Housman, Genevieve; Klitgord, Niels; Mazumdar, Varun; McGettrick, Mark G.; Osmani, Lais; Swaminathan, Rajeswari; Tao, Kevin R.; Letovsky, Stan; Vitkup, Dennis; Segre, Daniel; Salzberg, Steven L.; Delisi, Charles; Steffen, Martin; Kasif, Simon

A Systems Biology Approach Identifies Inflammatory Abnormalities Between Mouse Strains Prior to Development of Metabolic Disease

DIABETES

IF7.5

2010-08-16

OAAI

Mori, Marcelo A.; Liu, Manway; Bezy, Olivier; Almind, Katrine; Shapiro, Hagit; Kasif, Simon; Kahn, C. Ronald

Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle

ARTIFICIAL INTELLIGENCE IN MEDICINE

IF6.2

2010-07-01

PREAI

Mitrofanova, Antonina; Kleinberg, Samantha; Carlton, Jane; Kasif, Simon; Mishra, Bud

研究方向