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Jose Espejo Valle-Inclán

European Bioinformatics Institute

18H指数
48论文数
2.8K被引数
收录论文 14
发表时间
A tumour-derived organoid biobank maps cancer gene dependencies肿瘤来源的类器官生物样本库绘制了癌症基因依赖图谱
errNature
IF48.5
err2026-08-05
err0
errOAAI
errC. Herranz-Ors; S. G. Bhosle; A. E. Beck; J. G. R. Gilbert; G. Picco; J. Espejo Valle-Inclan; F. Muyas; S. Valentini; A. E. Andres; R. Ansari; S. Barthorpe; G. Battarbee; C. M. Beaver; S. Brocklesby; J. Cantwell; C. A. Collins; J. Davis; H. G. Dimitrova; J. Doran; E. Efendi; K. Evans; M. Fekry; T. A. Fowler; M. Garcia-Casado; J. A. T. Griffiths; C. Hall; R. Hamer; C. Hardy; Z. Hewitson; E. Hitch; L. Holland; D. A. Jackson; N. Joshi; A. Kavasakali; L. Letchford; H. B. Lightfoot; H. Lingala; I. Mali; K. May; T. Mironenko; J. Morris; C. Pacini; S. Price; G. Robert-Tissot; H. A. Rogers; J. V. Smith; K. Smith; E. Souster; W. J. Spence; F. Thomas; S. F. Vieira; S. Walker; G. Alfonsin; H. Bermingham; H. Coles; D. P. Ennis; A. Freeman; G. Giannone; N. Grehan; E. A. Griffiths; J. Hall; S. L. Lee; E. Y. L. Leung; C. Loreno; C. Millington; A. Mirnezami; B. Nutzinger; K. Orzechowska; C. M. A. Pinna; A. M. Redmond; K. Roberts; S. Roy; D. A. Sanders; P. Taniere; M. Vias; K. Wanigasooriya; M. R. Stratton; L. M. Staudt; U. McDermott; J. D. Brenton; I. A. McNeish; A. Biankin; O. J. Sansom; I. Cortes-Ciriano; T. J. Underwood; R. C. Fitzgerald; A. D. Beggs; H. E. Francies; M. J. Garnett
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SAVANA: reliable analysis of somatic structural variants and copy number aberrations using long-read sequencingSAVANA:利用长读长测序技术可靠分析体细胞结构变异和拷贝数异常
err2025-05-28
err0
errOAAI
errElrick, Hillary; Sauer, Carolin M.; Espejo Valle-Inclan, Jose; Trevers, Katherine; Tanguy, Melanie; Zumalave, Sonia; De Noon, Solange; Muyas, Francesc; Cascao, Rita; Afonso, Angela; Rust, Alistair G.; Amary, Fernanda; Tirabosco, Roberto; Giess, Adam; Freeman, Timothy; Sosinsky, Alona; Piculell, Katherine; Miller, David T.; Faria, Claudia C.; Elgar, Greg
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Non-homologous end joining shapes the genomic rearrangement landscape of chromothripsis from mitotic errors非同源末端连接通过有丝分裂错误塑造了染色体的基因组重排景观
err2024-07-04
err1
errOAAI
errHu, Qing; Valle-Inclan, Jose Espejo; Dahiya, Rashmi; Guyer, Alison; Mazzagatti, Alice; Maurais, Elizabeth G.; Engel, Justin L.; Lu, Huiming; Davis, Anthony J.; Cortes-Ciriano, Isidro; Ly, Peter
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Evolutionary trajectories of complex genome rearrangements in osteosarcoma
err2024-03-22
err0
PREAI
errCiriano, Isidro Cortes; Valle-Inclan, Jose Espejo; de Noon, Solange; Trevers, Katherine; Elrick, Hillary; Flanagan, Adrienne M.
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De novo detection of somatic mutations in high-throughput single-cell profiling data sets在高通量单细胞分析数据集中从头检测体细胞突变
err2023-07-06
err22
errOAAI
errMuyas, Francesc; Sauer, Carolin M.; Valle-Inclan, Jose Espejo; Li, Ruoyan; Rahbari, Raheleh; Mitchell, Thomas J.; Hormoz, Sahand; Cortes-Ciriano, Isidro
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SAVANA: a computational method to characterize structural variation in human cancer genomes using nanopore sequencing
err2023-04-14
err1
PREAI
errElrick, Hillary; Valle-Inclan, Jose Espejo; Trevers, Katherine E.; Muyas, Francesc; Cascao, Rita; Afonso, Angela; Faria, Claudia C.; Flanagan, Adrienne M.; Cortes-Ciriano, Isidro
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A multi-platform reference for somatic structural variation detection
err2022-06-01
err7
errOAAI
errValle-Inclan, Jose Espejo; Besselink, Nicolle J. M.; de Bruijn, Ewart; Cameron, Daniel L.; Ebler, Jana; Kutzera, Joachim; van Lieshout, Stef; Marschall, Tobias; Nelen, Marcel; Priestley, Peter; Renkens, Ivo; Roemer, Margaretha G. M.; Roosmalen, Markus J. van; Wenger, Aaron M.; Ylstra, Bauke; Fijneman, Remond J. A.; Kloosterman, Wigard P.; Cuppen, Edwin
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Patient-derived organoids model cervical tissue dynamics and viral oncogenesis in cervical cancer
err2021-08-01
err118
PREAI
errLohmussaar, Kadi; Oka, Rurika; Valle-Inclan, Jose Espejo; Smits, Milou H. H.; Wardak, Hila; Korving, Jeroen; Begthel, Harry; Proost, Natalie; van de Ven, Marieke; Kranenburg, Onno W.; Jonges, Trudy G. N.; Zweemer, Ronald P.; Veersema, Sebastiaan; van Boxtel, Ruben; Clevers, Hans
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GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasing
err2021-07-12
err77
errOAAI
errCameron, Daniel L.; Baber, Jonathan; Shale, Charles; Valle-Inclan, Jose Espejo; Besselink, Nicolle; van Hoeck, Arne; Janssen, Roel; Cuppen, Edwin; Priestley, Peter; Papenfuss, Anthony T.
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Partner independent fusion gene detection by multiplexed CRISPR-Cas9 enrichment and long read nanopore sequencing
err2020-06-05
err41
errOAAI
errStangl, Christina; de Blank, Sam; Renkens, Ivo; Westera, Liset; Verbeek, Tamara; Valle-Inclan, Jose Espejo; Gonzalez, Rocio Chamorro; Henssen, Anton G.; van Roosmalen, Markus J.; Stam, Ronald W.; Voest, Emile E.; Kloosterman, Wigard P.; van Haaften, Gijs; Monroe, Glen R.
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Patient-Derived Ovarian Cancer Organoids Mimic Clinical Response and Exhibit Heterogeneous Inter- and Intrapatient Drug Responses
err2020-06-01
err179
errOAAI
errde Witte, Chris Jenske; Valle-Inclan, Jose Espejo; Hami, Nizar; Lohmussaar, Kadi; Kopper, Oded; Vreuls, Celien Philomena Henrieke; Jonges, Geertruida Nellie; van Diest, Paul; Luan Nguyen; Clevers, Hans; Kloosterman, Wigard Pieter; Cuppen, Edwin; Snippert, Hugo Johannes Gerhardus; Zweemer, Ronald Peter; Witteveen, Petronella Oda; Stelloo, Ellen
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An organoid platform for ovarian cancer captures intra- and interpatient heterogeneity
err2019-04-22
err567
PREAI
errKopper, Oded; de Witte, Chris J.; Lohmussaar, Kadi; Valle-Inclan, Jose Espejo; Hami, Nizar; Kester, Lennart; Balgobind, Anjali Vanita; Korving, Jeroen; Proost, Natalie; Begthel, Harry; van Wijk, Lise M.; Revilla, Sonia Aristin; Theeuwsen, Rebecca; van de Ven, Marieke; van Roosmalen, Markus J.; Ponsioen, Bas; Ho, Victor W. H.; Neel, Benjamin G.; Bosse, Tjalling; Gaarenstroom, Katja N.; Vrieling, Harry; Vreeswijk, Maaike P. G.; van Diest, Paul J.; Witteveen, Petronella O.; Jonges, Trudy; Bos, Johannes L.; van Oudenaarden, Alexander; Zweemer, Ronald P.; Snippert, Hugo J. G.; Kloosterman, Wigard P.; Clevers, Hans
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Long-Read Annotation: Automated Eukaryotic Genome Annotation Based on Long-Read cDNA Sequencing
err2018-11-06
err38
errOAAI
errCook, David E.; Valle-Inclan, Jose Espejo; Pajoro, Alice; Rovenich, Hanna; Thomma, Bart P. H. J.; Faino, Luigi
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Mapping and phasing of structural variation in patient genomes using nanopore sequencing
err2017-11-06
err139
errOAAI
errStancu, Mircea Cretu; van Roosmalen, Markus J.; Renkens, Ivo; Nieboer, Marleen M.; Middelkamp, Sjors; de Ligt, Joep; Pregno, Giulia; Giachino, Daniela; Mandrile, Giorgia; Valle-Inclan, Jose Espejo; Korzelius, Jerome; de Bruijn, Ewart; Cuppen, Edwin; Talkowski, Michael E.; Marschall, Tobias; de Ridder, Jeroen; Kloosterman, Wigard P.
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