Jeroen de Ridder - Publications, H-index & Citations

Jeroen de Ridder

princess maxima center for pediatric oncology

34H指数

196论文数

6.4K被引数

收录论文 42

发表时间

How “Sturgeon” guides the surgeon in pediatric neuro-oncology “鲟鱼”如何在儿科神经肿瘤学中指导外科医生

Neuro-Oncology

IF13.4

2026-08-10

PREAI

Mariska Sie; Oscar H J Eelkman Rooda; Mariëtte E G Kranendonk; Pieter Wesseling; Marc Pagès-Gallego; Lennart Kester; Marc van Tuil; Eric Strengman; Janneke Slijkoort-Blom; Eugène T P Verwiel; Arie Maat; Jasper van der Lugt; Jeroen de Ridder; Bastiaan B J Tops; Carlo Vermeulen; Eelco W Hoving

Regulatory grammar in human promoters uncovered by MPRA-based deep learning 基于MPRA的深度学习发现的人类促进者中的调节语法

Nature

IF48.5

2026-02-04

OAAI

Lucía Barbadilla-Martínez; Noud Klaassen; Vinícius H. Franceschini-Santos; Jérémie Breda; Hatice Yücel; Miguel Hernández-Quiles; Tijs van Lieshout; Carlos G. Urzua Traslaviña; Minh Chau Luong Boi; Maryam Akbarzadeh; Celia Hermana-Garcia-Agullo; Sebastian Gregoricchio; Marcel de Haas; Roy Straver; Sarah Derks; Wilbert Zwart; Emile Voest; Lude Franke; Michiel Vermeulen; Jeroen de Ridder; Bas van Steensel

Brain tumor classification from FFPE samples using nanopore methylation sequencing 使用纳米孔甲基化测序对FFPE样本进行脑肿瘤分类

NAR CANCER

IF3.2

2025-12-01

OAAI

Feinberg-Gorenshtein, Galina; Grunwald, Assaf; Vermeulen, Carlo; Mark, Nurit Gal; Shinderman-Maman, Elena; Levy-Barda, Adva; Shichrur, Keren; Hameiri-Grossman, Michal; Michaeli, Orli; Amar, Shira; Fichman, Suzanna; Natan, Abraham; Siegal, Tali; Yust-Katz, Shlomit; Weiss, Hanna; Konen, Osnat; Kershenovich, Amir; Kanner, Andrew a; De ridder, Jeroen; Toledano, Helen; Izraeli, Shai; Birger, Yehudit; Ebenstein, Yuval

Author Correction: Single-cell multi-omic detection of DNA methylation and histone modifications reconstructs the dynamics of epigenomic maintenance 作者更正：单细胞多组学检测DNA甲基化和组蛋白修饰重建了表观基因组维持的动态过程

Nature Methods

IF32.1

2025-11-14

OAAI

Christoph Geisenberger; Jeroen van den Berg; Vincent van Batenburg; Buys de Barbanson; Anna Lyubimova; Joe Verity-Legg; Xiufei Chen; Yibin Liu; Chun-Xiao Song; Jeroen de Ridder; Alexander van Oudenaarden

Single-cell multi-omic detection of DNA methylation and histone modifications reconstructs the dynamics of epigenomic maintenance 单细胞多组学检测DNA甲基化和组蛋白修饰重建了表观基因组维持的动态过程

Nature Methods

IF32.1

2025-09-25

OAAI

Predicting gene expression from DNA sequence using deep learning models 基于深度学习模型的DNA序列基因表达预测

Nature Reviews Genetics

IF52

2025-05-13

PREAI

Lucía Barbadilla-Martínez; Noud Klaassen; Bas van Steensel; Jeroen de Ridder

Glioblastoma, IDH-wildtype with primarily leptomeningeal localization diagnosed by nanopore sequencing of cell-free DNA from cerebrospinal fluid

ACTA NEUROPATHOLOGICA

IF9.3

2024-09-03

OAAI

Sol, Nik; Kooi, Evert-Jan; Pages-Gallego, Marc; Brandsma, Dieta; Bugiani, Marianna; de Ridder, Jeroen; Wesseling, Pieter; Vermeulen, Carlo

ULTRA-FAST DEEP-LEARNED CNS TUMOR CLASSIFICATION USING STURGEON; THE IMPACT ON STRATEGY FOR THE PEDIATRIC NEUROSURGEON

NEURO-ONCOLOGY

IF13.4

2024-06-18

OAAI

Hoving, Eelco; Rooda, Oscar Eelkman; Sie, Mariska; Vermeulen, Carlo; Pages-Gallego, Marc; Kester, Lennart; Kranendonk, Mariette; Wesseling, Pieter; van der Lugt, Jasper; Tops, Bastiaan; de Ridder, Jeroen

The genome-wide mutational consequences of DNA hypomethylation

SCIENTIFIC REPORTS

IF3.9

2023-04-27

OAAI

Besselink, Nicolle; Keijer, Janneke; Vermeulen, Carlo; Boymans, Sander; de Ridder, Jeroen; van Hoeck, Arne; Cuppen, Edwin; Kuijk, Ewart

Comprehensive benchmark and architectural analysis of deep learning models for nanopore sequencing basecalling

GENOME BIOLOGY

IF9.4

2023-04-11

OAAI

Pages-Gallego, Marc; de Ridder, Jeroen

Predicting response to enzalutamide and abiraterone in metastatic prostate cancer using whole-omics machine learning

NATURE COMMUNICATIONS

IF15.7

2023-04-08

OAAI

de Jong, Anouk C.; Danyi, Alexandra; van Riet, Job; de Wit, Ronald; Sjostrom, Martin; Feng, Felix; de Ridder, Jeroen; Lolkema, Martijn P.

Multi-country metabolic signature discovery for chicken health classification

METABOLOMICS

IF3.3

2023-02-02

OAAI

Wolthuis, Joanna C. C.; Magnusdottir, Stefania; Stigter, Edwin; Tang, Yuen Fung; Jans, Judith; Gilbert, Myrthe; van der Hee, Bart; Langhout, Pim; Gerrits, Walter; Kies, Arie; de Ridder, Jeroen; van Mil, Saskia

Echtvar: compressed variant representation for rapid annotation and filtering of SNPs and indels

NUCLEIC ACIDS RESEARCH

IF13.1

2022-10-27

OAAI

Pedersen, Brent S.; de Ridder, Jeroen

Integration of multiple lineage measurements from the same cell reconstructs parallel tumor evolution

CELL GENOMICS

IF9

2022-02-01

OAAI

Kester, Lennart; de Barbanson, Buys; Lyubimova, Anna; Chen, Li-Ting; Van der Schrier, Valerie; Alemany, Anna; Mooijman, Dylan; Peterson-Maduro, Josi; Drost, Jarno; de Ridder, Jeroen; Van Oudenaarden, Alexander

Cancer Type Classification in Liquid Biopsies Based on Sparse Mutational Profiles Enabled through Data Augmentation and Integration

LIFE-BASEL

IF3.4

2021-12-21

OAAI

Danyi, Alexandra; Jager, Myrthe; de Ridder, Jeroen

Predicting pathogenic non-coding SVs disrupting the 3D genome in 1646 whole cancer genomes using multiple instance learning

SCIENTIFIC REPORTS

IF3.9

2021-07-13

OAAI

Nieboer, Marleen M.; Nguyen, Luan; de Ridder, Jeroen

MetaboShiny: interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data

METABOLOMICS

IF3.3

2020-09-11

OAAI

Wolthuis, Joanna C.; Magnusdottir, Stefania; Pras-Raves, Mia; Moshiri, Maryam; Jans, Judith J. M.; Burgering, Boudewijn; van Mil, Saskia; de Ridder, Jeroen

Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke

EUROPEAN JOURNAL OF HUMAN GENETICS

IF4.6

2020-02-11

OAAI

von Berg, Joanna; van der Laan, Sander W.; McArdle, Patrick F.; Malik, Rainer; Kittner, Steven J.; Mitchell, Braxton D.; Worrall, Bradford B.; de Ridder, Jeroen; Pulit, Sara L.

Eleven grand challenges in single-cell data science 单细胞数据科学的11大挑战

GENOME BIOLOGY

IF9.4

2020-02-07

733

OAAI

Laehnemann, David; Koester, Johannes; Szczurek, Ewa; McCarthy, Davis J.; Hicks, Stephanie C.; Robinson, Mark D.; Vallejos, Catalina A.; Campbell, Kieran R.; Beerenwinkel, Niko; Mahfouz, Ahmed; Pinello, Luca; Skums, Pavel; Stamatakis, Alexandros; Attolini, Camille Stephan-Otto; Aparicio, Samuel; Baaijens, Jasmijn; Balvert, Marleen; de Barbanson, Buys; Cappuccio, Antonio; Corleone, Giacomo; Dutilh, Bas E.; Florescu, Maria; Guryev, Victor; Holmer, Rens; Jahn, Katharina; Lobo, Thamar Jessurun; Keizer, Emma M.; Khatri, Indu; Kielbasa, Szymon M.; Korbel, Jan O.; Kozlov, Alexey M.; Kuo, Tzu-Hao; Lelieveldt, Boudewijn P. F.; Mandoiu, Ion I.; Marioni, John C.; Marschall, Tobias; Moelder, Felix; Niknejad, Amir; Raczkowski, Lukasz; Reinders, Marcel; de Ridder, Jeroen; Saliba, Antoine-Emmanuel; Somarakis, Antonios; Stegle, Oliver; Theis, Fabian J.; Yang, Huan; Zelikovsky, Alex; McHardy, Alice C.; Raphael, Benjamin J.; Shah, Sohrab P.; Schonhuth, Alexander

Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies

NATURE PROTOCOLS

IF16

2020-01-13

PREAI

Vermeulen, Carlo; Allahyar, Amin; Bouwman, Britta A. M.; Krijger, Peter H. L.; Verstegen, Marjon J. A. M.; Geeven, Geert; Valdes-Quezada, Christian; Renkens, Ivo; Straver, Roy; Kloosterman, Wigard P.; de Ridder, Jeroen; de Laat, Wouter

研究方向