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A

Asim K. Bera

university of washington

38H指数
253论文数
7.8K被引数
收录论文 42
发表时间
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Author Correction: De novo design of quasisymmetric two-component protein cages作者更正：从头设计准对称双组分蛋白质笼
errNature
IF48.5
err2026-06-09
err0
PREAI
errShunzhi Wang; Ying Xie; David Chmielewski; Connor Weidle; Tong Shu; Green Ahn; Ryan D. Kibler; Cindy Hernandez; Wei Chen; David Camilo Duran; Ann Carr; Asim K. Bera; Sangmin Lee; Justin Decarreau; Alex Kang; Evans Brackenbrough; Emily Joyce; Kejia Wu; Andrew J. Borst; Andrew Favor; Buwei Huang; Frank DiMaio; Liam J. Holt; David Baker
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De novo design of a macrocycle-induced dimerization system for cellular control从头设计一种由大环诱导的二聚化系统用于细胞控制
errNature Communications
IF15.7
err2026-05-18
err0
errOAAI
errStephanie Hanna; Patrick J. Salveson; Basile Wicky; Madison A. Kennedy; Derrick R. Hicks; Carolina Moller; Suna Cheng; Xinting Li; Mohamad Abedi; Brian Coventry; Meerit Y. Said; Asim K. Bera; Alex Kang; Barry L. Stoddard; David Baker
err分享
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Small-molecule binding and sensing with a designed protein family与设计的蛋白质家族的小分子结合和传感
errNature Communications
IF15.7
err2026-03-28
err0
errOAAI
errGyu Rie Lee; Samuel J. Pellock; Christoffer Norn; Doug Tischer; Justas Dauparas; Ivan Anishchenko; Jaron A. M. Mercer; Alex Kang; Asim K. Bera; Hannah Nguyen; Evans Brackenbrough; Banumathi Sankaran; Inna Goreshnik; Dionne Vafeados; Nicole Roullier; Hannah L. Han; Brian Coventry; Hugh K. Haddox; David R. Liu; Andy Hsien-Wei Yeh; David Baker
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Computational design of metallohydrolases金属水解酶的计算设计
errNature
IF48.5
err2025-12-03
err0
errOAAI
errDonghyo Kim; Seth M. Woodbury; Woody Ahern; Doug Tischer; Alex Kang; Emily Joyce; Asim K. Bera; Nikita Hanikel; Saman Salike; Rohith Krishna; Jason Yim; Samuel J. Pellock; Anna Lauko; Indrek Kalvet; Donald Hilvert; David Baker
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De Novo Design of High-Affinity Miniprotein Binders Targeting Francisella Tularensis Virulence Factor从零设计靶向Francisella Tularensis毒力因子的高亲和力微型蛋白结合剂
errAngewandte Chemie International Edition
IF16.9
err2025-10-21
err0
errOAAI
errGizem Gokce-Alpkilic; Buwei Huang; Andi Liu; Lieselotte S.M. Kreuk; Yaxi Wang; Victor Adebomi; Yensi Flores Bueso; Asim K. Bera; Alex Kang; Stacey R. Gerben; Stephen Rettie; Dionne K. Vafeados; Nicole Roullier; Inna Goreshnik; Xinting Li; David Baker; Joshua J. Woodward; Joseph D. Mougous; Gaurav Bhardwaj
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Design of facilitated dissociation enables timing of cytokine signalling促进解离的设计能够调控细胞因子信号的时间。
errNature
IF48.5
err2025-09-24
err0
errOAAI
errAdam J. Broerman; Christoph Pollmann; Yang Zhao; Mauriz A. Lichtenstein; Mark D. Jackson; Maxx H. Tessmer; Won Hee Ryu; Masato Ogishi; Mohamad H. Abedi; Danny D. Sahtoe; Aza Allen; Alex Kang; Joshmyn De La Cruz; Evans Brackenbrough; Banumathi Sankaran; Asim K. Bera; Daniel M. Zuckerman; Stefan Stoll; K. Christopher Garcia; Florian Praetorius; Jacob Piehler; David Baker
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Diffusing protein binders to intrinsically disordered proteins将蛋白质结合剂扩散到本质上无序的蛋白质
errNature
IF48.5
err2025-07-30
err0
errOAAI
errCaixuan Liu; Kejia Wu; Hojun Choi; Hannah L. Han; Xueli Zhang; Joseph L. Watson; Green Ahn; Jason Z. Zhang; Sara Shijo; Lydia L. Good; Charlotte M. Fischer; Asim K. Bera; Alex Kang; Evans Brackenbrough; Brian Coventry; Derrick R. Hick; Seema Qamar; Xinting Li; Justin Decarreau; Stacey R. Gerben; Wei Yang; Inna Goreshnik; Dionne Vafeados; Xinru Wang; Mila Lamb; Analisa Murray; Sebastian Kenny; Magnus S. Bauer; Andrew N. Hoofnagle; Ping Zhu; Tuomas P. J. Knowles; David Baker
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Design of intrinsically disordered region binding proteins内在无序区域结合蛋白的设计
errScience
IF45.8
err2025-07-17
err0
PREAI
errKejia Wu; Hanlun Jiang; Derrick R. Hicks; Caixuan Liu; Edin Muratspahić; Theresa A. Ramelot; Yuexuan Liu; Kerrie McNally; Sebastian Kenny; Andrei Mihut; Amit Gaur; Brian Coventry; Wei Chen; Asim K. Bera; Alex Kang; Stacey Gerben; Mila Ya-Lan Lamb; Analisa Murray; Xinting Li; Madison A. Kennedy; Wei Yang; Zihao Song; Gudrun Schober; Stuart M. Brierley; John O’Neill; Michael H. Gelb; Gaetano T. Montelione; Emmanuel Derivery; David Baker
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Accurate de novo design of high-affinity protein-binding macrocycles using deep learning使用深度学习精确从头设计高亲和力蛋白质结合大环
errNature Chemical Biology
IF13.7
err2025-06-20
err0
errOAAI
errStephen A. Rettie; David Juergens; Victor Adebomi; Yensi Flores Bueso; Qinqin Zhao; Alexandria N. Leveille; Andi Liu; Asim K. Bera; Joana A. Wilms; Alina Üffing; Alex Kang; Evans Brackenbrough; Mila Lamb; Stacey R. Gerben; Analisa Murray; Paul M. Levine; Maika Schneider; Vibha Vasireddy; Sergey Ovchinnikov; Oliver H. Weiergräber; Dieter Willbold; Joshua A. Kritzer; Joseph D. Mougous; David Baker; Frank DiMaio; Gaurav Bhardwaj
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Multistate and functional protein design using RoseTTAFold sequence space diffusion ( sep , 2024 , 10.1038/s41587-024-02395-w)
errNATURE BIOTECHNOLOGY
IF41.7
err2024-10-07
err0
errOAAI
errLisanza, Sidney Lyayuga; Gershon, Jacob Merle; Tipps, Samuel W. K.; Sims, Jeremiah Nelson; Arnoldt, Lucas; Hendel, Samuel J.; Simma, Miriam K.; Liu, Ge; Yase, Muna; Wu, Hongwei; Tharp, Claire D.; Li, Xinting; Kang, Alex; Brackenbrough, Evans; Bera, Asim K.; Gerben, Stacey; Wittmann, Bruce J.; Mcshan, Andrew C.; Baker, David
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Multistate and functional protein design using RoseTTAFold sequence space diffusion使用rosettarfold序列空间扩散进行多状态和功能蛋白质设计
errNATURE BIOTECHNOLOGY
IF41.7
err2024-09-25
err3
errOAAI
errLisanza, Sidney Lyayuga; Gershon, Jacob Merle; Tipps, Samuel W. K.; Sims, Jeremiah Nelson; Arnoldt, Lucas; Hendel, Samuel J.; Simma, Miriam K.; Liu, Ge; Yase, Muna; Wu, Hongwei; Tharp, Claire D.; Li, Xinting; Kang, Alex; Brackenbrough, Evans; Bera, Asim K.; Gerben, Stacey; Wittmann, Bruce J.; McShan, Andrew C.; Baker, David
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Enumerative Discovery of Noncanonical Polypeptide Secondary Structures非规范多肽二级结构的枚举发现
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2024-09-04
err0
errOAAI
errMoyer, Adam P.; Ramelot, Theresa A.; Curti, Mariano; Eastman, Margaret A.; Kang, Alex; Bera, Asim K.; Tejero, Roberto; Salveson, Patrick J.; Curutchet, Carles; Romero, Elisabet; Montelione, Gaetano T.; Baker, David
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De novo design of proteins housing excitonically coupled chlorophyll special pairs
errNATURE CHEMICAL BIOLOGY
IF13.7
err2024-06-03
err1
errOAAI
errEnnist, Nathan M.; Wang, Shunzhi; Kennedy, Madison A.; Curti, Mariano; Sutherland, George A.; Vasilev, Cvetelin; Redler, Rachel L.; Maffeis, Valentin; Shareef, Saeed; Sica, Anthony V.; Hua, Ash Sueh; Deshmukh, Arundhati P.; Moyer, Adam P.; Hicks, Derrick R.; Swartz, Avi Z.; Cacho, Ralph A.; Novy, Nathan; Bera, Asim K.; Kang, Alex; Sankaran, Banumathi; Johnson, Matthew P.; Phadkule, Amala; Reppert, Mike; Ekiert, Damian; Bhabha, Gira; Stewart, Lance; Caram, Justin R.; Stoddard, Barry L.; Romero, Elisabet; Hunter, C. Neil; Baker, David
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Rapid and automated design of two- component protein nanomaterials using ProteinMPNN使用ProteinMPNN快速和自动化设计双组分蛋白质纳米材料
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-03-19
err4
errOAAI
errde Haas, Robbert J.; Brunette, Natalie; Goodson, Alex; Dauparas, Justas; Yi, Sue Y.; Yang, Erin C.; Dowling, Quinton; Nguyen, Hannah; Kang, Alex; Bera, Asim K.; Sankaran, Banumathi; de Vries, Renko; Baker, David; King, Neil P.
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Design of amyloidogenic peptide traps
errNATURE CHEMICAL BIOLOGY
IF13.7
err2024-03-19
err3
errOAAI
errSahtoe, Danny D.; Andrzejewska, Ewa A.; Han, Hannah L.; Rennella, Enrico; Schneider, Matthias M.; Meisl, Georg; Ahlrichs, Maggie; Decarreau, Justin; Nguyen, Hannah; Kang, Alex; Levine, Paul; Lamb, Mila; Li, Xinting; Bera, Asim K.; Kay, Lewis E.; Knowles, Tuomas P. J.; Baker, David
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Improving Protein Expression, Stability, and Function with ProteinMPNN用ProteinMPNN改善蛋白质表达、稳定性和功能
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2024-01-09
err41
errOAAI
errSumida, Kiera H.; Nunez-Franco, Reyes; Kalvet, Indrek; Pellock, Samuel J.; Wicky, Basile I. M.; Milles, Lukas F.; Dauparas, Justas; Wang, Jue; Kipnis, Yakov; Jameson, Noel; Kang, Alex; De La Cruz, Joshmyn; Sankaran, Banumathi; Bera, Asim K.; Jimenez-Oses, Gonzalo; Baker, David
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Directing polymorph specific calcium carbonate formation with de novo protein templates
errNATURE COMMUNICATIONS
IF15.7
err2023-12-14
err9
errOAAI
errDavila-Hernandez, Fatima A.; Jin, Biao; Pyles, Harley; Zhang, Shuai; Wang, Zheming; Huddy, Timothy F.; Bera, Asim K.; Kang, Alex; Chen, Chun-Long; De Yoreo, James J.; Baker, David
err分享
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Accurate computational design of three-dimensional protein crystals
errNATURE MATERIALS
IF38.5
err2023-10-16
err21
errOAAI
errLi, Zhe; Wang, Shunzhi; Nattermann, Una; Bera, Asim K.; Borst, Andrew J.; Yaman, Muammer Y.; Bick, Matthew J.; Yang, Erin C.; Sheffler, William; Lee, Byeongdu; Seifert, Soenke; Hura, Greg L.; Nguyen, Hannah; Kang, Alex; Dalal, Radhika; Lubner, Joshua M.; Hsia, Yang; Haddox, Hugh; Courbet, Alexis; Dowling, Quinton; Miranda, Marcos; Favor, Andrew; Etemadi, Ali; Edman, Natasha I.; Yang, Wei; Weidle, Connor; Sankaran, Banumathi; Negahdari, Babak; Ross, Michael B.; Ginger, David S.; Baker, David
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Hallucination of closed repeat proteins containing central pockets
errNATURE STRUCTURAL & MOLECULAR BIOLOGY
IF10.1
err2023-09-28
err4
errOAAI
errAn, Linna; Hicks, Derrick R.; Zorine, Dmitri; Dauparas, Justas; Wicky, Basile I. M.; Milles, Lukas F.; Courbet, Alexis; Bera, Asim K.; Nguyen, Hannah; Kang, Alex; Carter, Lauren; Baker, David
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De novo design of highly selective miniprotein inhibitors of integrins αvβ6 and αvβ8
errNATURE COMMUNICATIONS
IF15.7
err2023-09-13
err7
errOAAI
errRoy, Anindya; Shi, Lei; Chang, Ashley; Dong, Xianchi; Fernandez, Andres; Kraft, John C.; Li, Jing; Le, Viet Q.; Winegar, Rebecca Viazzo; Cherf, Gerald Maxwell; Slocum, Dean; Poulson, P. Daniel; Casper, Garrett E.; Vallecillo-Zuniga, Mary L.; Valdoz, Jonard Corpuz; Miranda, Marcos C.; Bai, Hua; Kipnis, Yakov; Olshefsky, Audrey; Priya, Tanu; Carter, Lauren; Ravichandran, Rashmi; Chow, Cameron M.; Johnson, Max R.; Cheng, Suna; Smith, McKaela; Overed-Sayer, Catherine; Finch, Donna K.; Lowe, David; Bera, Asim K.; Matute-Bello, Gustavo; Birkland, Timothy P.; DiMaio, Frank; Raghu, Ganesh; Cochran, Jennifer R.; Stewart, Lance J.; Campbell, Melody G.; Van Ry, Pam M.; Springer, Timothy; Baker, David
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研究方向

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