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Dionne Vafeados

university of washington

0H指数
5论文数
0被引数
收录论文 15
发表时间
De novo design of miniproteins targeting GPCRs从头设计靶向GPCRs的迷你蛋白
errNature
IF48.5
err2026-05-21
err0
PREAI
errEdin Muratspahić; David Feldman; David E. Kim; Xiangli Qu; Ana-Maria Bratovianu; Paula Rivera-Sánchez; Jan Hendrik Voss; Emil P. T. Hertz; Mads Jeppesen; Federica Dimitri; Kensuke Sakamoto; Amrita Nallathambi; Pia Peceli; Jianjun Cao; Brian P. Cary; Matthew J. Belousoff; Peter Keov; Phuc N. H. Trinh; Qingchao Chen; Yue Ren; Justyn Fine; Sudha Mishra; Annu Dalal; Shachie Sinha; Ramanuj Banerjee; Manisankar Ganguly; Karthik Varappalayam Karuppusamy; Isaac Sappington; Thomas Schlichthaerle; Jason Z. Zhang; Arvind Pillai; Brian Coventry; Ljubica Mihaljević; Magnus Bauer; Susana Vázquez Torres; Amir Motmaen; Gyu Rie Lee; Long Tran; Xinru Wang; Inna Goreshnik; Dionne K. Vafeados; Justin E. Svendsen; Parisa Hosseinzadeh; Nicolai Lindegaard; Matthäus Brandt; Yann Waltenspühl; Kristine Deibler; Lukas Deweid; Anja Bennett; Jendrik Schöppe; Tiantang Dong; Xiaoli Yan; Luke Oostdyk; William Cao; Lakshmi Anantharaman; Johan J. Weisser; Jesper Frank Bastlund; Christoffer Bundgaard; Ayodeji A. Asuni; Justin G. English; Lance Stewart; Lauren Halloran; Jamie B. Spangler; André Lieber; Arun K. Shukla; Patrick M. Sexton; Bryan L. Roth; Brian E. Krumm; Denise Wootten; Christopher G. Tate; Christoffer Norn; David Baker
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Small-molecule binding and sensing with a designed protein family与设计的蛋白质家族的小分子结合和传感
err2026-03-28
err0
errOAAI
errGyu Rie Lee; Samuel J. Pellock; Christoffer Norn; Doug Tischer; Justas Dauparas; Ivan Anishchenko; Jaron A. M. Mercer; Alex Kang; Asim K. Bera; Hannah Nguyen; Evans Brackenbrough; Banumathi Sankaran; Inna Goreshnik; Dionne Vafeados; Nicole Roullier; Hannah L. Han; Brian Coventry; Hugh K. Haddox; David R. Liu; Andy Hsien-Wei Yeh; David Baker
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Improved protein binder design using β-pairing targeted RFdiffusion利用β-配对靶向RFdiffusion改进蛋白质结合剂设计
err2026-01-10
err0
errOAAI
errIsaac Sappington; Martin Toul; David S. Lee; Stephanie A. Robinson; Inna Goreshnik; Clara McCurdy; Tung Ching Chan; Nic Buchholz; Buwei Huang; Dionne Vafeados; Mariana Garcia-Sanchez; Nicole Roullier; Matthias Glögl; Christopher J. Kim; Joseph L. Watson; Susana Vázquez Torres; Koen H. G. Verschueren; Kenneth Verstraete; Cynthia S. Hinck; Melisa Benard-Valle; Brian Coventry; Jeremiah Nelson Sims; Green Ahn; Xinru Wang; Andrew P. Hinck; Timothy P. Jenkins; Hannele Ruohola-Baker; Steven M. Banik; Savvas N. Savvides; David Baker
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Atomically accurate de novo design of antibodies with RFdiffusion基于RFdiffusion的抗体原子级精确从头设计
errNature
IF48.5
err2025-11-05
err0
errOAAI
errNathaniel R. Bennett; Joseph L. Watson; Robert J. Ragotte; Andrew J. Borst; DéJenaé L. See; Connor Weidle; Riti Biswas; Yutong Yu; Ellen L. Shrock; Russell Ault; Philip J. Y. Leung; Buwei Huang; Inna Goreshnik; John Tam; Kenneth D. Carr; Benedikt Singer; Cameron Criswell; Basile I. M. Wicky; Dionne Vafeados; Mariana Garcia Sanchez; Ho Min Kim; Susana Vázquez Torres; Sidney Chan; Shirley M. Sun; Timothy T. Spear; Yi Sun; Keelan O’Reilly; John M. Maris; Nikolaos G. Sgourakis; Roman A. Melnyk; Chang C. Liu; David Baker
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De Novo Design of High-Affinity Miniprotein Binders Targeting Francisella Tularensis Virulence Factor从零设计靶向Francisella Tularensis毒力因子的高亲和力微型蛋白结合剂
err2025-10-21
err0
errOAAI
errGizem Gokce-Alpkilic; Buwei Huang; Andi Liu; Lieselotte S.M. Kreuk; Yaxi Wang; Victor Adebomi; Yensi Flores Bueso; Asim K. Bera; Alex Kang; Stacey R. Gerben; Stephen Rettie; Dionne K. Vafeados; Nicole Roullier; Inna Goreshnik; Xinting Li; David Baker; Joshua J. Woodward; Joseph D. Mougous; Gaurav Bhardwaj
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Computational design of sequence-specific DNA-binding proteins序列特异性DNA结合蛋白的计算机辅助设计
err2025-09-12
err0
errOAAI
errCameron J. Glasscock; Robert J. Pecoraro; Ryan McHugh; Lindsey A. Doyle; Wei Chen; Olivier Boivin; Beau Lonnquist; Emily Na; Yuliya Politanska; Hugh K. Haddox; David Cox; Christoffer Norn; Brian Coventry; Inna Goreshnik; Dionne Vafeados; Gyu Rie Lee; Raluca Gordân; Barry L. Stoddard; Frank DiMaio; David Baker
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Diffusing protein binders to intrinsically disordered proteins将蛋白质结合剂扩散到本质上无序的蛋白质
errNature
IF48.5
err2025-07-30
err0
errOAAI
errCaixuan Liu; Kejia Wu; Hojun Choi; Hannah L. Han; Xueli Zhang; Joseph L. Watson; Green Ahn; Jason Z. Zhang; Sara Shijo; Lydia L. Good; Charlotte M. Fischer; Asim K. Bera; Alex Kang; Evans Brackenbrough; Brian Coventry; Derrick R. Hick; Seema Qamar; Xinting Li; Justin Decarreau; Stacey R. Gerben; Wei Yang; Inna Goreshnik; Dionne Vafeados; Xinru Wang; Mila Lamb; Analisa Murray; Sebastian Kenny; Magnus S. Bauer; Andrew N. Hoofnagle; Ping Zhu; Tuomas P. J. Knowles; David Baker
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Design of high-specificity binders for peptide–MHC-I complexes高特异性结合剂的设计用于肽-MHC-I复合物
errScience
IF45.8
err2025-07-24
err0
PREAI
errBingxu Liu; Nathan F. Greenwood; Julia E. Bonzanini; Amir Motmaen; Jeremy Meyerberg; Tao Dao; Xinyu Xiang; Russell Ault; Jazmin Sharp; Chunyu Wang; Gian Marco Visani; Dionne K. Vafeados; Nicole Roullier; Armita Nourmohammad; David A. Scheinberg; K. Christopher Garcia; David Baker
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Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships
err2024-10-22
err0
PREAI
errKudron, Michelle; Gevirtzman, Louis; Victorsen, Alec; Lear, Bridget C.; Gao, Jiahao; Xu, Jinrui; Samanta, Swapna; Frink, Emily; Tran-Pearson, Adri; Huynh, Chau; Vafeados, Dionne; Hammonds, Ann; Fisher, William; Wall, Martha; Wesseling, Greg; Hernandez, Vanessa; Lin, Zhichun; Kasparian, Mary; White, Kevin; Allada, Ravi; Gerstein, Mark; Hillier, Ladeana; Celniker, Susan E.; Reinke, Valerie; Waterston, Robert H.
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Improving de novo protein binder design with deep learning利用深度学习改进从头蛋白质结合剂设计
err2023-05-06
err72
errOAAI
errBennett, Nathaniel R.; Coventry, Brian; Goreshnik, Inna; Huang, Buwei; Allen, Aza; Vafeados, Dionne; Peng, Ying Po; Dauparas, Justas; Baek, Minkyung; Stewart, Lance; DiMaio, Frank; De Munck, Steven; Savvides, Savvas N.; Baker, David
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The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors现代资源: 数百种果蝇和秀丽隐杆线虫转录因子的全基因组结合谱
err2018-03-01
err140
errOAAI
errKudron, Michelle M.; Victorsen, Alec; Gevirtzman, Louis; Hillier, LaDeana W.; Fisher, William W.; Vafeados, Dionne; Kirkey, Matt; Hammonds, Ann S.; Gersch, Jeffery; Ammouri, Haneen; Wall, Martha L.; Moran, Jennifer; Steffen, David; Szynkarek, Matt; Seabrook-Sturgis, Samantha; Jameel, Nader; Kadaba, Madhura; Patton, Jaeda; Terrell, Robert; Corson, Mitch; Durham, Timothy J.; Park, Soo; Samanta, Swapna; Han, Mei; Xu, Jinrui; Yan, Koon-Kiu; Celniker, Susan E.; White, Kevin P.; Ma, Lijia; Gerstein, Mark; Reinke, Valerie; Waterston, Robert H.
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Multidimensional regulation of gene expression in the C. elegans embryo
err2012-04-16
err135
errOAAI
errMurray, John Isaac; Boyle, Thomas J.; Preston, Elicia; Vafeados, Dionne; Mericle, Barbara; Weisdepp, Peter; Zhao, Zhongying; Bao, Zhirong; Boeck, Max; Waterston, Robert H.
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BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis
err2004-11-01
err513
errOAAI
errCaño-Delgado, A; Yin, YH; Yu, C; Vafeados, D; Mora-García, S; Cheng, JC; Nam, KH; Li, JM; Chory, J
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Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis
err2002-04-01
err975
errOAAI
errWang, ZY; Nakano, T; Gendron, J; He, JX; Chen, M; Vafeados, D; Yang, YL; Fujioka, S; Yoshida, S; Asami, T; Chory, J
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BIN2, a new brassinosteroid-insensitive locus in Arabidopsis
err2001-09-01
err417
errOAAI
errLi, JM; Nam, KH; Vafeados, D; Chory, J
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