Jacob D. Durrant - Publications, H-index & Citations

Jacob D. Durrant

biological sciences

38H指数

114论文数

6.1K被引数

收录论文 59

发表时间

Generative AI in structure-based drug discovery 基于结构的药物发现中的生成式AI

BMC Biology

IF4.5

2026-03-21

OAAI

Zhuoya Zhong; Jacob D. Durrant

Precision fragment addition: domain-specific DeepFrag2 models for smarter lead optimization 精确片段添加：用于更智能先导化合物优化的领域特定DeepFrag2模型

Digital Discovery

IF5.6

2026-02-26

OAAI

César R. García-Jacas; Harrison Green; Shayne D. Wierbowski; Jacob D. Durrant

Teaching old docks new tricks with machine learning enhanced ensemble docking

SCIENTIFIC REPORTS

IF3.9

2024-09-05

OAAI

Bhatt, Roshni; Wang, Ann; Durrant, Jacob D.

The chaperone PrsA2 regulates the secretion, stability, and folding of listeriolysin O during Listeria monocytogenes infection

MBIO

IF4.7

2024-07-17

OAAI

Agbavor, Charles; Zimnicka, Adriana; Kumar, Allison; George, Jada L.; Torres, Madeline; Prehna, Gerd; Alonzo III, Francis; Durrant, Jacob D.; Freitag, Nancy E.; Cahoon, Laty A.

CENsible: Interpretable Insights into Small-Molecule Binding with Context Explanation Networks

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2024-06-07

OAAI

Bhatt, Roshni; Koes, David Ryan; Durrant, Jacob D.

MolModa: accessible and secure molecular docking in a web browser

NUCLEIC ACIDS RESEARCH

IF13.1

2024-05-23

OAAI

Kochnev, Yuri; Ahmed, Mayar; Maldonado, Alex M.; Durrant, Jacob D.

Genome mining yields putative disease-associated ROMK variants with distinct defects 基因组挖掘产生具有明显缺陷的推定疾病相关ROMK变体

PLOS GENETICS

IF3.7

2023-11-13

OAAI

Nguyen, Nga H.; Sarangi, Srikant; Mcchesney, Erin M.; Sheng, Shaohu; Durrant, Jacob D.; Porter, Aidan W.; Kleyman, Thomas R.; Pitluk, Zachary W.; Brodsky, Jeffrey L.

Worth the Weight: Sub-Pocket EXplorer (SubPEx), a Weighted Ensemble Method to Enhance Binding-Pocket Conformational Sampling

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2023-08-16

OAAI

Hellemann, Erich; Durrant, Jacob D.

Changing course: Glucose starvation drives nuclear accumulation of Hexokinase 2 in S. cerevisiae

PLOS GENETICS

IF3.7

2023-05-17

OAAI

Lesko, Mitchell A. D.; Chandrashekarappa, Dakshayini G. C.; Jordahl, Eric M. F.; Oppenheimer, Katherine G. P.; Bowman II, Ray W. S.; Shang, Chaowei P.; Durrant, Jacob D. S.; Schmidt, Martin C. P.; O'Donnell, Allyson F. S.

Computational and experimental analyses of alanine racemase suggest new avenues for developing allosteric small-molecule antibiotics

DRUG DEVELOPMENT RESEARCH

IF4.2

2023-05-02

OAAI

van Wieren, Arie; Durrant, Jacob D.; Majumdar, Sudipta

Prot2Prot: a deep learning model for rapid, photorealistic macromolecular visualization

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

IF3.1

2022-08-26

OAAI

Durrant, Jacob D.

FPocketWeb: protein pocket hunting in a web browser

JOURNAL OF CHEMINFORMATICS

IF5.7

2022-08-26

OAAI

Kochnev, Yuri; Durrant, Jacob D.

Phosphate position is key in mediating transmembrane ion channel TMEM16A-phosphatidylinositol 4,5-bisphosphate interaction

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2022-08-01

OAAI

Tembo, Maiwase; Bainbridge, Rachel E.; Lara-Santos, Crystal; Komondor, Kayla M.; Daskivich, Grant J.; Durrant, Jacob D.; Rosenbaum, Joel C.; Carlson, Anne E.

Open-Source Browser-Based Tools for Structure-Based Computer-Aided Drug Discovery

MOLECULES

IF4.6

2022-07-20

OAAI

Wang, Ann; Durrant, Jacob D.

Adaptive laboratory evolution in S. cerevisiae highlights role of transcription factors in fungal xenobiotic resistance 酿酒酵母的适应性实验室进化突出了转录因子在真菌异源生物抗性中的作用

COMMUNICATIONS BIOLOGY

IF5.1

2022-02-11

OAAI

Ottilie, Sabine; Luth, Madeline R.; Hellemann, Erich; Goldgof, Gregory M.; Vigil, Eddy; Kumar, Prianka; Cheung, Andrea L.; Song, Miranda; Godinez-Macias, Karla P.; Carolino, Krypton; Yang, Jennifer; Lopez, Gisel; Abraham, Matthew; Tarsio, Maureen; LeBlanc, Emmanuelle; Whitesell, Luke; Schenken, Jake; Gunawan, Felicia; Patel, Reysha; Smith, Joshua; Love, Melissa S.; Williams, Roy M.; McNamara, Case W.; Gerwick, William H.; Ideker, Trey; Suzuki, Yo; Wirth, Dyann F.; Lukens, Amanda K.; Kane, Patricia M.; Cowen, Leah E.; Durrant, Jacob D.; Winzeler, Elizabeth A.

BINANA 2: Characterizing Receptor/Ligand Interactions in Python and JavaScript

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2022-02-07

OAAI

Young, Jade; Garikipati, Neerja; Durrant, Jacob D.

PARP1: Structural insights and pharmacological targets for inhibition

DNA REPAIR

IF2.7

2021-07-01

OAAI

Spiegel, Jacob O.; Van Houten, Bennett; Durrant, Jacob D.