Pardis C. Sabeti - Publications, H-index & Citations

Pardis C. Sabeti

Broad Institute of Harvard and MIT

99H指数

420论文数

7.9W被引数

收录论文 156

发表时间

Scalable near-real-time Bayesian phylogenetics for outbreaks with Delphy 可扩展的近实时贝叶斯系统发育学方法（Delphy）用于疫情爆发分析

Nature

IF48.5

2026-09-16

OAAI

Patrick Varilly; Mark Schifferli; Katherine Yang; Paul Cronan; Ivan Specht; Tim Burcham; Olivia Glennon; Olivia Jacks; Ellory Laning; Libby Marrs; Kyle Oba; Shannon Yeung; Karlie Wenran Zhao; Edyth Parker; Ifeanyi Omah; Jonathan E. Pekar; Laura Luebbert; Kristian G. Andersen; Daniel J. Park; Stephen F. Schaffner; Bronwyn L. MacInnis; Christian Happi; Jacob E. Lemieux; Al Ozonoff; Michael Mitzenmacher; Ben Fry; Pardis C. Sabeti

Rapid Cas13a-based penA genotyping for cefixime susceptibility in Neisseria gonorrhoeae 基于Cas13a的快速penA基因分型用于奈瑟氏淋球菌对头孢克肟的敏感性检测

mSphere

IF3.1

2026-06-30

PREAI

Nguyen, Thi Hai Yen; Garg, Sakshi; Adams, Gordon; Mantena, Sreekar; Gopal, Nisha; Suk, Ho-Jun; D. Klausner, Jeffrey; Sabeti, Pardis C.; Lemieux, Jacob E.; Allan-Blitz, Lao-Tzu

Aging disrupts spatiotemporal coordination in the cycling murine ovary 衰老破坏了循环小鼠卵巢中的时空协调

Nature Aging

IF19.4

2026-06-17

OAAI

Tammy C. T. Lan; Alison Kochersberger; Ruth Raichur; Sophia Szady; Hien Tran; Radiana Simeonova; Ashley Helmuth; Andrew Minagar; Maria José Orozco Fuentes; Vipin Kumar; Giovanni Marrero; Irving Barrera; Sarah Mangiameli; Alex K. Shalek; Pardis C. Sabeti; Fei Chen; David S. Fischer; Jennifer L. Garrison; Hattie Chung

Rapid development and field evaluation of a portable CRISPR-based assay for Mpox during the 2025 Sierra Leone outbreak 2025年塞拉利昂猴痘疫情期间便携式CRISPR检测方法的快速开发与现场评估

Nature Communications

IF15.7

2026-06-06

OAAI

Nisha Gopal; Tsion Abay; Carolyn Payne; Michael Gomez; Maariam Manjia Rogers; Ibrahim Umaru Fofanah; Tiangay P. M. S. Kallon; Mohamed S. Kamara; Ho-Jun Suk; John Demby Sandi; Taylor Brock-Fisher; Elyse Stachler; Lao-Tzu Allan-Blitz; David J. Roach; Marietou F. Paye; Colby Wilkason; Donald S. Grant; Al Ozonoff; Pardis C. Sabeti

Genomic epidemiology of the 2025 mpox epidemic in Sierra Leone 2025年塞拉利昂猴痘疫情的基因组流行病学

Nature Medicine

IF50

2026-05-12

OAAI

Allan K. O. Campbell; John Demby Sandi; Ifeanyi F. Omah; Martin Faye; Edyth Parker; Taylor Brock-Fisher; Crystal M. Gigante; Vidalyn Folorunso; Mohamed Saio Kamara; Anu Jegede Williams; Mouhamed Kane; Tiangay Mariama Patience Sallay Kallon; Julian Campbell; Kadiatu Salmata Sesay; Sia Mani; Choe Miller; Naomi Daniel Sesay; Francis Baimba; Mignane Ndiaye; Roberta Lansana; Ibrahim Umaru Fofanah; Simon Ruhweza; Zein Souma; Amanda Kargbo; Komba Koninga; Alie Tia; Jone Ngobeh; Foday Thoronka; Alusine Fofanah; Al Ozonoff; Colby Wilkason; Danny Park; Christopher Tomkins-Tinch; Marietou F. Paye; Christopher Shin; Ian Baudi; Brendan Blumenstiel; Patrick Varilly; Ivan Specht; Ben Fry; Karlie Zhao; Paul Cronan; Ellory Laning; Oludayo Oluwaseyi Ope-ewe; Ayotunde Elijah Sijuwola; Femi Saibu; Harouna Soumare; Ebenezer Kehinde Ogundana; Ruth Oluwaseun Obaado; Jolly Amoche Adole; Imonikhe Kennedy Kio; Folefac Agnes Njeandoh; Alexandra Tuttle; Walter O. Oguta; Jonathan Greene; Aminata Koroma; Joseph Kanu; Mamadou Aliou Barry; Aboubacry Gaye; Andy Mahine Diouf; Christine Hughes; Joshua I. Levy; Alhaji N’jai; Moussa Moise Diagne; Dolo Nosamiefan; George Ameh; John Klena; Monique A. Foster; Abebaw Kebede; Collins Tanui; Boubacar Diallo; Anise Happi; Sofonias Tessema; Abdourahmane Sow; Yenew Kebede; Isatta Wurie; James Squire; Doris Harding; Zikan Koroma; Mohamed Boie Jalloh; Amadou Alpha Sall; Kristian G. Andersen; Andrew Rambaut; Mohamed Alex Vandi; Ibrahima Socé Fall; Pardis Sabeti; Christian Happi; Foday Sahr; Donald S. Grant

Best practices when benchmarking CATCH for the design of genome enrichment probes 在评估CATCH以设计基因组富集探针时的最佳实践

Bioinformatics

IF5.4

2026-05-01

PREAI

Metsky, Hayden C.; Siddle, Katherine J.; Matranga, Christian B.; Sabeti, Pardis C.

Functional dissection of complex trait variants at single-nucleotide resolution 在单核苷酸分辨率下对复杂性状变异的功能解析

Nature

IF48.5

2026-02-25

OAAI

Layla Siraj; Rodrigo I. Castro; Hannah B. Dewey; Susan Kales; John C. Butts; Thanh Thanh L. Nguyen; Masahiro Kanai; Daniel Berenzy; Kousuke Mouri; Qingbo S. Wang; Petko P. Fiziev; Kristin Tsuo; Zachary R. McCaw; Sager J. Gosai; François Aguet; Ran Cui; Irfahan Kassam; Jeremy McRae; Christopher M. Vockley; Caleb A. Lareau; Sergey Abramov; Alexandr Boystov; Jeff Vierstra; Yukinori Okada; Alexander Gusev; Thouis R. Jones; Eric S. Lander; Pardis C. Sabeti; Hilary K. Finucane; Steven K. Reilly; Jacob C. Ulirsch; Ryan Tewhey

Development of a Combined Clinical and Research-Developed Testing Strategy for Highly Pathogenic Avian Influenza A Virus H5 针对高致病性禽流感A病毒H5的联合临床与研究开发检测策略发展

OPEN FORUM INFECTIOUS DISEASES

IF3.8

2026-01-01

OAAI

Adams, Gordon C.; Devlin, Jamie E.; Klontz, Erik; Laing, Rachel A.; Branda, John A.; Chowdhury, Navid; Kwon, Sunyoung; Sabeti, Pardis C.; Stachler, Elyse; Thiriveedhi, Vamsi; Shenoy, Erica S.; Lemieux, Jacob E.; Turbett, Sarah E.

Multiplexed detection of febrile infections using CARMEN 使用CARMEN对发热性感染进行多重检测

Nature Communications

IF15.7

2025-12-09

OAAI

M. Kamariza; K. McMahon; L. Kim; N. L. Welch; L. Stenson; L. T. Allan-Blitz; G. Sanders; P. Eromon; A. Muhammad; A. E. Sijuwola; O. O. Ope-ewe; A. O. Ayinla; C. l’Anson; I. Baudi; M. F. Paye; C. Wilkason; J. Lemieux; A. Ozonoff; E. Stachler; C. T. Happi; P. C. Sabeti

Bead-based approaches for increased sensitivity and multiplexing of CRISPR diagnostics 基于微球的方法以提高CRISPR诊断的灵敏度和多重检测能力

Nature Biomedical Engineering

IF26.6

2025-09-22

OAAI

Sameed M. Siddiqui; Nicole L. Welch; Tien G. Nguyen; Amaya Razmi; Tianyi Chang; Rebecca Senft; Jon Arizti-Sanz; Marzieh E. Mirhashemi; David R. Stirling; Cheri M. Ackerman; Beth A. Cimini; Paul C. Blainey; Pardis C. Sabeti; Cameron Myhrvold

Preliminary clinical performance of a Cas13a-based lateral flow assay for detecting Neisseria gonorrhoeae in urine specimens

MSPHERE

IF3.1

2025-01-28

OAAI

Allan-Blitz, Lao-Tzu; Adams, Gordon; Sanders, Gabriela; Shah, Palak; Ramesh, Krithik; Jarolimova, Jana; Ard, Kevin L.; Branda, John A.; Klausner, Jeffrey D.; Sabeti, Pardis C.; Lemieux, Jacob E.

Model-directed generation of artificial CRISPR-Cas13a guide RNA sequences improves nucleic acid detection

NATURE BIOTECHNOLOGY

IF41.7

2024-10-11

PREAI

Mantena, Sreekar; Pillai, Priya P.; Petros, Brittany A.; Welch, Nicole L.; Myhrvold, Cameron; Sabeti, Pardis C.; Metsky, Hayden C.

Severe Acute Respiratory Syndrome Coronavirus 2 Household Transmission During the Omicron Era in Massachusetts: A Prospective, Case-Ascertained Study Using Genomic Epidemiology

OPEN FORUM INFECTIOUS DISEASES

IF3.8

2024-10-07

OAAI

Banga, Jaspreet; Brock-Fisher, Taylor; Petros, Brittany A.; Dai, Eric Y.; Leonelli, Ariana T.; Dobbins, Sabrina T.; Messer, Katelyn S.; Nathanson, Audrey B.; Capone, Amelia; Littlehale, Nancy; Appiah-Danquah, Viola; Dim, Siang; Moreno, Gage K.; Crowther, Maura; Deruff, Katherine C.; Macinnis, Bronwyn L.; Springer, Michael; Sabeti, Pardis C.; Stephenson, Kathryn E.

CRISPR-Based Assays for Point-of-Need Detection and Subtyping of Influenza

JOURNAL OF MOLECULAR DIAGNOSTICS

IF3.4

2024-07-01

OAAI

Zhang, Yibin B.; Arizti-Sanz, Jon; Bradley, A'Doriann; Huang, Yujia; Kosoko-Thoroddse, Tinna-Solveig F.; Sabeti, Pardis C.; Myhrvold, Cameron

Increased Pediatric Respiratory Syncytial Virus Case Counts Following the Emergence of Severe Acute Respiratory Syndrome Coronavirus 2 Can Be Attributed to Changes in Testing

CLINICAL INFECTIOUS DISEASES

IF7.3

2024-04-11

OAAI

Petros, Brittany A.; Milliren, Carly E.; Sabeti, Pardis C.; Ozonoff, Al

Multicenter integrated analysis of noncoding CRISPRi screens 非编码CRISPRi筛选的多中心综合分析

NATURE METHODS

IF32.1

2024-03-19

OAAI

Yao, David; Tycko, Josh; Oh, Jin Woo; Bounds, Lexi R.; Gosai, Sager J.; Lataniotis, Lazaros; Mackay-Smith, Ava; Doughty, Benjamin R.; Gabdank, Idan; Schmidt, Henri; Guerrero-Altamirano, Tania; Siklenka, Keith; Guo, Katherine; White, Alexander D.; Youngworth, Ingrid; Andreeva, Kalina; Ren, Xingjie; Barrera, Alejandro; Luo, Yunhai; Yardimci, Galip Gurkan; Tewhey, Ryan; Kundaje, Anshul; Greenleaf, William J.; Sabeti, Pardis C.; Leslie, Christina; Pritykin, Yuri; Moore, Jill E.; Beer, Michael A.; Gersbach, Charles A.; Reddy, Timothy E.; Shen, Yin; Engreitz, Jesse M.; Bassik, Michael C.; Reilly, Steven K.

Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing 使用宏基因组测序调查塞内加尔非疟疾性发热性疾病的病因

NATURE COMMUNICATIONS

IF15.7

2024-01-25

OAAI

Levine, Zoe C.; Sene, Aita; Mkandawire, Winnie; Deme, Awa B.; Ndiaye, Tolla; Sy, Mouhamad; Gaye, Amy; Diedhiou, Younouss; Mbaye, Amadou M.; Ndiaye, Ibrahima M.; Gomis, Jules; Ndiop, Medoune; Sene, Doudou; Faye Paye, Marietou; Macinnis, Bronwyn L.; Schaffner, Stephen F.; Park, Daniel J.; Badiane, Aida S.; Colubri, Andres; Ndiaye, Mouhamadou; Sy, Ngayo; Sabeti, Pardis C.; Ndiaye, Daouda; Siddle, Katherine J.

The HLA-II immunopeptidome of SARS-CoV-2

CELL REPORTS

IF6.9

2024-01-01

OAAI

Weingarten-Gabbay, Shira; Chen, Da-Yuan; Sarkizova, Siranush; Taylor, Hannah B.; Gentili, Matteo; Hernandez, Gabrielle M.; Pearlman, Leah R.; Bauer, Matthew R.; Rice, Charles M.; Clauser, Karl R.; Hacohen, Nir; Carr, Steven A.; Abelin, Jennifer G.; Saeed, Mohsan; Sabeti, Pardis C.

Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses

CELL GENOMICS

IF9

2023-12-01

OAAI

Normandin, Erica; Triana, Sergio; Raju, Siddharth S.; Lan, Tammy C. T.; Lagerborg, Kim; Rudy, Melissa; Adams, Gordon C.; DeRuff, Katherine C.; Logue, James; Liu, David; Strebinger, Daniel; Rao, Arya; Messer, Katelyn S.; Sacks, Molly; Adams, Ricky D.; Janosko, Krisztina; Kotliar, Dylan; Shah, Rickey; Crozier, Ian; Rinn, John L.; Mele, Marta; Honko, Anna N.; Zhang, Feng; Babadi, Mehrtash; Luban, Jeremy; Bennett, Richard S.; Shalek, Alex K.; Barkas, Nikolaos; Lin, Aaron E.; Hensley, Lisa E.; Sabeti, Pardis C.; Siddle, Katherine J.

Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants( vol 28 , pg 1083 , 2022)

NATURE MEDICINE

IF50

2023-11-09

OAAI

Welch, Nicole L.; Zhu, Meilin; Hua, Catherine; Weller, Juliane; Mirhashemi, Marzieh Ezzaty; Nguyen, Tien G.; Mantena, Sreekar; Bauer, Matthew R.; Shaw, Bennett M.; Ackerman, Cheri M.; Thakku, Sri Gowtham; Tse, Megan W.; Kehe, Jared; Uwera, Marie-Martine; Eversley, Jacqueline S.; Bielwaski, Derek A.; McGrath, Graham; Braidt, Joseph; Johnson, Jeremy; Cerrato, Felecia; Moreno, Gage K.; Krasilnikova, Lydia A.; Petros, Brittany A.; Gionet, Gabrielle L.; King, Ewa; Huard, Richard C.; Jalbert, Samantha K.; Cleary, Michael L.; Fitzgerald, Nicholas A.; Gabriel, Stacey B.; Gallagher, Glen R.; Smole, Sandra C.; Madoff, Lawrence C.; Brown, Catherine M.; Keller, Matthew W.; Wilson, Malania M.; Kirby, Marie K.; Barnes, John R.; Park, Daniel J.; Siddle, Katherine J.; Happi, Christian T.; Hung, Deborah T.; Springer, Michael; Macinnis, Bronwyn L.; Lemieux, Jacob E.; Rosenberg, Eric; Branda, John A.; Blainey, Paul C.; Sabeti, Pardis C.; Myhrvold, Cameron

研究方向