Mark A. Hallen

Duke University

15H指数

46论文数

929被引数

收录论文 19

发表时间

Protein Design by Provable Algorithms

COMMUNICATIONS OF THE ACM

IF12.2

2019-09-24

OAAI

Hallen, Mark A.; Donald, Bruce R.

PLUG (Pruning of Local Unrealistic Geometries) removes restrictions on biophysical modeling for protein design

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2018-11-11

OAAI

Hallen, Mark A.

OSPREY 3.0: Open-source protein redesign for you, with powerful new features

JOURNAL OF COMPUTATIONAL CHEMISTRY

IF4.8

2018-10-14

OAAI

Hallen, Mark A.; Martin, Jeffrey W.; Ojewole, Adegoke; Jou, Jonathan D.; Lowegard, Anna U.; Frenkel, Marcel S.; Gainza, Pablo; Nisonoff, Hunter M.; Mukund, Aditya; Wang, Siyu; Holt, Graham T.; Zhou, David; Dowd, Elizabeth; Donald, Bruce R.

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-Rotamer-Like Efficiency

BIOPHYSICAL JOURNAL

IF3.1

2017-02-01

OAAI

Hallen, Mark A.; Jou, Jonathan D.; Donald, Bruce R.

Fast gap-free enumeration of conformations and sequences for protein design

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2015-08-24

OAAI

Roberts, Kyle E.; Gainza, Pablo; Hallen, Mark A.; Donald, Bruce R.

Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2015-06-22

345

OAAI

Do Kwon, Young; Pancera, Marie; Acharya, Priyamvada; Georgiev, Ivelin S.; Crooks, Emma T.; Gorman, Jason; Joyce, M. Gordon; Guttman, Miklos; Ma, Xiaochu; Narpala, Sandeep; Soto, Cinque; Terry, Daniel S.; Yang, Yongping; Zhou, Tongqing; Ahlsen, Goran; Bailer, Robert T.; Chambers, Michael; Chuang, Gwo-Yu; Doria-Rose, Nicole A.; Druz, Aliaksandr; Hallen, Mark A.; Harned, Adam; Kirys, Tatsiana; Louder, Mark K.; O'Dell, Sijy; Ofek, Gilad; Osawa, Keiko; Prabhakaran, Madhu; Sastry, Mallika; Stewart-Jones, Guillaume B. E.; Stuckey, Jonathan; Thomas, Paul V.; Tittley, Tishina; Williams, Constance; Zhang, Baoshan; Zhao, Hong; Zhou, Zhou; Donald, Bruce R.; Lee, Lawrence K.; Zolla-Pazner, Susan; Baxa, Ulrich; Schoen, Arne; Freire, Ernesto; Shapiro, Lawrence; Lee, Kelly K.; Arthos, James; Munro, James B.; Blanchard, Scott C.; Mothes, Walther; Binley, James M.; McDermott, Adrian B.; Mascola, John R.; Kwong, Peter D.

Compact Representation of Continuous Energy Surfaces for More Efficient Protein Design

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2015-04-10

OAAI

Hallen, Mark A.; Gainza, Pablo; Donald, Bruce R.

Computing Conformational Entropy in Antibody Interfaces

BIOPHYSICAL JOURNAL

IF3.1

2014-01-01

OAAI

Gainza, Pablo; Roberts, Kyle E.; Hallen, Mark A.; Donald, Bruce R.