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R

Rory Johnson

University College Dublin
H指数:110
被引数:9.7万

个人简介

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Translon: a single term for translated regions

Świrski, M.I.; Tierney, J.A.S.; Albà, M.M.; Andreev, D.E.; Aspden, J.L.; Atkins, J.F.; Bassani-Sternberg, M.; Berry, M.J.; Biffo, S.; Boris-Lawrie, K.; 等. Translon: 翻译区域的单一术语. Nat. Methods 2025, 22, 2002–2006. [Google Scholar] [CrossRef] [PubMed]

Nature Methods
IF32.1
2025-09-010
PRE
Michał I. Świrski; Jack A. S. Tierney; M. Mar Albà; Dmitry E. Andreev; Julie L. Aspden; John F. Atkins; Michal Bassani-Sternberg; Marla J. Berry; Stefano Biffo; Kathleen Boris-Lawrie; Mark Borodovsky; Ian Brierley; Matthew Brook; Marie A. Brunet; Janusz M. Bujnicki; Neva Caliskan; Lorenzo Calviello; Anne-Ruxandra Carvunis; Jamie H. D. Cate; Can Cenik; Kung Yao Chang; Yiwen Chen; Sonia Chothani; Jyoti S. Choudhary; Patricia L. Clark; Jim Clauwaert; Lynn Cooley; Erik Dassi; Kellie Dean; Jean-Jacques Diaz; Christoph Dieterich; Rivka Dikstein; Jonathan D. Dinman; Sergey E. Dmitriev; Olga A. Dontsova; Christine M. Dunham; Sandeep M. Eswarappa; Philip J. Farabaugh; Pouya Faridi; Ivo Fierro-Monti; Andrew E. Firth; David Gatfield; Fátima Gebauer; Mikhail S. Gelfand; Nicola K. Gray; Rachel Green; Chris H. Hill; Ya-Ming Hou; Norbert Hübner; Zoya Ignatova; Pavel Ivanov; Shintaro Iwasaki; Rory Johnson; Ahmad Jomaa; Marko Jovanovic; Irwin Jungreis; Manolis Kellis; Jeffrey S. Kieft; Alex V. Kochetov; Eugene V. Koonin; Andrei A. Korostelev; Joanna Kufel; Ivan V. Kulakovskiy; Leo Kurian; Denis L. J. Lafontaine; Ola Larsson; Gary Loughran; Julius Lukeš; Marco Mariotti; Elena S. Martens-Uzunova; Thomas F. Martinez; Akinobu Matsumoto; Joel McManus; Jan Medenbach; Sergey V. Melnikov; Gerben Menschaert; Catharina Merchante; Martin Mikl; W. Allen Miller; Oliver Mühlemann; Olivier Namy; Danny D. Nedialkova; Jozef Nosek; Sandra Orchard; Petar Ozretić; Mihaela Pertea; Dmitri D. Pervouchine; Luísa Romão; David Ron; Xavier Roucou; Maria P. Rubtsova; Jorge Ruiz-Orera; Alan Saghatelian; Steven L. Salzberg; Lucia A. Seale; Cathal Seoighe; Petr V. Sergiev; Premal Shah; Nikolay Shirokikh; Sarah A. Slavoff; Nahum Sonenberg; Timothy J. Stasevich; Roman J. Szczesny; Tiina Tamm; Marek Tchórzewski; Ivan Topisirovic; Michel L. Tremblay; Tamir Tuller; Igor Ulitsky; Leoš Shivaya Valášek; Petra Van Damme; Gabriella Viero; Juan Antonio Vizcaino; Christine Vogel; Edward W. J. Wallace; Jonathan S. Weissman; Eric Westhof; Nicola Whiffin; Daniel N. Wilson; Zhi Xie; Jonathan W. Yewdell; Martina M. Yordanova; Chien-Hung Yu; Vyacheslav Yurchenko; Bojan Zagrovic; Eivind Valen; Pavel V. Baranov
Tumour mutations in long noncoding RNAs enhance cell fitness (vol 14, 3342, 2023)
NATURE COMMUNICATIONS
IF15.7
2023-09-060
OAAI
Esposito, Roberta; Lanzos, Andres; Uroda, Tina; Ramnarayanan, Sunandini; Buechi, Isabel; Polidori, Taisia; Guillen-Ramirez, Hugo; Mihaljevic, Ante; Merlin, Bernard Mefi; Mela, Lia; Zoni, Eugenio; Hovhannisyan, Lusine; Mccluggage, Finn; Medo, Matus; Basile, Giulia; Meise, Dominik F.; Zwyssig, Sandra; Wenger, Corina; Schwarz, Kyriakos; Vancura, Adrienne; Bosch-Guiteras, Nuria; Andrades, Alvaro; Tham, Ai Ming; Roemmele, Michaela; Medina, Pedro P.; Ochsenbein, Adrian F.; Riether, Carsten; Kruithof-de Julio, Marianna; Zimmer, Yitzhak; Medova, Michaela; Stroka, Deborah; Fox, Archa; Johnson, Rory
Tumour mutations in long noncoding RNAs enhance cell fitness
NATURE COMMUNICATIONS
IF15.7
2023-06-087
OAAI
Esposito, Roberta; Lanzos, Andres; Uroda, Tina; Ramnarayanan, Sunandini; Buechi, Isabel; Polidori, Taisia; Guillen-Ramirez, Hugo; Mihaljevic, Ante; Merlin, Bernard Mefi; Mela, Lia; Zoni, Eugenio; Hovhannisyan, Lusine; McCluggage, Finn; Medo, Matus; Basile, Giulia; Meise, Dominik F.; Zwyssig, Sandra; Wenger, Corina; Schwarz, Kyriakos; Vancura, Adrienne; Bosch-Guiteras, Nuria; Andrades, Alvaro; Tham, Ai Ming; Roemmele, Michaela; Ochsenbein, Adrian F.; Riether, Carsten; Kruithof-de Julio, Marianna; Zimmer, Yitzhak; Medova, Michaela; Stroka, Deborah; Fox, Archa; Johnson, Rory
Long non-coding RNAs: definitions, functions, challenges and recommendations

长链非编码rna: 定义、功能、挑战和建议

NATURE REVIEWS MOLECULAR CELL BIOLOGY
IF90.2
2023-01-03711
OA
Mattick, John S. S.; Amaral, Paulo P. P.; Carninci, Piero; Carpenter, Susan; Chang, Howard Y. Y.; Chen, Ling-Ling; Chen, Runsheng; Dean, Caroline; Dinger, Marcel E. E.; Fitzgerald, Katherine A. A.; Gingeras, Thomas R. R.; Guttman, Mitchell; Hirose, Tetsuro; Huarte, Maite; Johnson, Rory; Kanduri, Chandrasekhar; Kapranov, Philipp; Lawrence, Jeanne B. B.; Lee, Jeannie T. T.; Mendell, Joshua T. T.; Mercer, Timothy R. R.; Moore, Kathryn J. J.; Nakagawa, Shinichi; Rinn, John L. L.; Spector, David L. L.; Ulitsky, Igor; Wan, Yue; Wilusz, Jeremy E. E.; Wu, Mian
GENCODE: reference annotation for the human and mouse genomes in 2023

GENCODE: 人类和小鼠基因组2023年的参考注释

NUCLEIC ACIDS RESEARCH
IF13.1
2022-11-2489
OAAI
Frankish, Adam; Carbonell-Sala, Silvia; Diekhans, Mark; Jungreis, Irwin; Loveland, Jane E.; Mudge, Jonathan M.; Sisu, Cristina; Wright, James C.; Arnan, Carme; Barnes, If; Banerjee, Abhimanyu; Bennett, Ruth; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Calvet, Ferriol; Cerdan-Velez, Daniel; Cunningham, Fiona; Davidson, Claire; Donaldson, Sarah; Dursun, Cagatay; Fatima, Reham; Giorgetti, Stefano; Giron, Carlos Garcia; Gonzalez, Jose Manuel; Hardy, Matthew; Harrison, Peter W.; Hourlier, Thibaut; Hollis, Zoe; Hunt, Toby; James, Benjamin; Jiang, Yunzhe; Johnson, Rory; Kay, Mike; Lagarde, Julien; Martin, Fergal J.; Gomez, Laura Martinez; Nair, Surag; Ni, Pengyu; Pozo, Fernando; Ramalingam, Vivek; Ruffier, Magali; Schmitt, Bianca M.; Schreiber, Jacob M.; Steed, Emily; Suner, Marie-Marthe; Sumathipala, Dulika; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Wass, Elizabeth; Yang, Yucheng T.; Yates, Andrew; Zafrulla, Zahoor; Choudhary, Jyoti S.; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J. P.; Kellis, Manolis; Kundaje, Anshul; Paten, Benedict; Tress, Michael L.; Flicek, Paul
Multi-hallmark long noncoding RNA maps reveal non-small cell lung cancer vulnerabilities
CELL GENOMICS
IF9
2022-09-0112
OAAI
Esposito, Roberta; Polidori, Taisia; Meise, Dominik F.; Pulido-Quetglas, Carlos; Chouvardas, Panagiotis; Forster, Stefan; Schaerer, Paulina; Kobel, Andrea; Schlatter, Juliette; Kerkhof, Erik; Roemmele, Michaela; Rice, Emily S.; Zhu, Lina; Lanzos, Andrea; Guillen-Ramirez, Hugo A.; Basile, Giulia; Carrozzo, Irene; Vancura, Adrienne; Ullrich, Sebastian; Andrades, Alvaro; Harvey, Dylan; Medina, Pedro P.; Ma, Patrick C.; Haefliger, Simon; Wang, Xin; Martinez, Ivan; Ochsenbein, Adrian F.; Riether, Carsten; Johnson, Rory
Noncoding RNAs: biology and applications-a Keystone Symposia report

非编码rna: 生物学和应用-Keystone专题讨论会报告

ANNALS OF THE NEW YORK ACADEMY OF SCIENCES
IF4.8
2021-11-1716
OA
Cable, Jennifer; Heard, Edith; Hirose, Tetsuro; Prasanth, Kannanganattu, V; Chen, Ling-Ling; Henninger, Jonathan E.; Quinodoz, Sofia A.; Spector, David L.; Diermeier, Sarah D.; Porman, Allison M.; Kumar, Dhiraj; Feinberg, Mark W.; Shen, Xiaohua; Unfried, Juan Pablo; Johnson, Rory; Chen, Chun-Kan; Wilusz, Jeremy E.; Lempradl, Adelheid; McGeary, Sean E.; Wahba, Lamia; Pyle, Anna Marie; Hargrove, Amanda E.; Simon, Matthew D.; Marcia, Marco; Przanowska, Roza K.; Chang, Howard Y.; Jaffrey, Samie R.; Contreras, Lydia M.; Chen, Qi; Shi, Junchao; Mendell, Joshua T.; He, Lin; Song, Erwei; Rinn, John L.; Lalwani, Mukesh Kumar; Kalem, Murat Can; Chuong, Edward B.; Maquat, Lynne E.; Liu, Xuhang
GENCODE 2021

GENCODE 2021

NUCLEIC ACIDS RESEARCH
IF13.1
2020-12-03647
OAAI
Frankish, Adam; Diekhans, Mark; Jungreis, Irwin; Lagarde, Julien; Loveland, Jane E.; Mudge, Jonathan M.; Sisu, Cristina; Wright, James C.; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Carbonell Sala, Silvia; Cunningham, Fiona; Di Domenico, Tomas; Donaldson, Sarah; Fiddes, Ian T.; Giron, Carlos Garcia; Gonzalez, Jose Manuel; Grego, Tiago; Hardy, Matthew; Hourlier, Thibaut; Howe, Kevin L.; Hunt, Toby; Izuogu, Osagie G.; Johnson, Rory; Martin, Fergal J.; Martinez, Laura; Mohanan, Shamika; Muir, Paul; Navarro, Fabio C. P.; Parker, Anne; Pei, Baikang; Pozo, Fernando; Riera, Ferriol Calvet; Ruffier, Magali; Schmitt, Bianca M.; Stapleton, Eloise; Suner, Marie-Marthe; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Wolf, Maxim Y.; Xu, Jinuri; Yang, Yucheng T.; Yates, Andrew; Zerbino, Daniel; Zhang, Yan; Choudhary, Jyoti S.; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J. P.; Kellis, Manolis; Paten, Benedict; Tress, Michael L.; Flicek, Paul

研究方向

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R
Roderic Guigó
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C
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Joana Carlevaro-Fita
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P
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Lawrence W. Stanton
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A
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