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Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes 使用异丙醇和基质管从低生物量和高生物量样品中简化的核酸和代谢物提取 Brennan, Caitriona; Shaffer, Justin P.; Belda-Ferre, Pedro; Mohanty, Ipsita; Weng, Yuhan; Cantrell, Kalen; Ackermann, Gail; Allaband, Celeste; Bryant, Mackenzie; Farmer, Sawyer; Gonzalez, Antonio; Mcdonald, Daniel; Martino, Cameron; Meehan, Michael J.; Rahman, Gibraan; Salido, Rodolfo A.; Schwartz, Tara; Song, Se Jin; Tribelhorn, Caitlin; Tubb, Helena M.; Dorrestein, Pieter C.; Knight, Rob 分享 收藏
CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments CaDAVEr：一个跨越脊椎动物环境的微生物分解者宏基因组组装基因组目录 Seitz, Valerie A.; McGivern, Bridget B.; Shaffer, Michael; Borton, Mikayla A.; Belk, Aeriel D.; Ghadermazi, Parsa; Martino, Cameron; Shenhav, Liat; Zhang, Anru R.; Shi, Pixu; Emmons, Alexandra; Deel, Heather; Xu, Zhenjiang Zech; Nieciecki, Victoria; Zhu, Qiyun; Cantrell, Kalen; Ben-Hur, Asa; Reed, Sasha C.; Humphry, Greg C.; Ackermann, Gail; McDonald, Daniel; Chan, Siu Hung Joshua; Connor, Melissa; Boyd, Derek A.; Smith, Jake; Watson, Jenna M. S.; Vidoli, Giovanna; Steadman, Dawnie; Lynne, Aaron M.; Bucheli, Sibyl; Carter, David O.; Burcham, Zachary M.; Knight, Rob; Wrighton, Kelly C.; Metcalf, Jessica L. 分享 收藏
SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx SARS-CoV-2感染性可以通过糖萼的细菌修饰来调节 Martino, Cameron; Kellman, Benjamin P.; Sandoval, Daniel R.; Clausen, Thomas Mandel; Cooper, Robert; Benjdia, Alhosna; Soualmia, Feryel; Clark, Alex E.; Garretson, Aaron F.; Marotz, Clarisse A.; Song, Se Jin; Wandro, Stephen; Zaramela, Livia S.; Salido, Rodolfo A.; Zhu, Qiyun; Armingol, Erick; Vazquez-Baeza, Yoshiki; Mcdonald, Daniel; Sorrentino, James T.; Taylor, Bryn; Belda-Ferre, Pedro; Das, Promi; Ali, Farhana; Liang, Chenguang; Zhang, Yujie; Schifanella, Luca; Covizzi, Alice; Lai, Alessia; Riva, Agostino; Basting, Christopher; Broedlow, Courtney Ann; Havulinna, Aki S.; Jousilahti, Pekka; Estaki, Mehrbod; Kosciolek, Tomasz; Kuplicki, Rayus; Victor, Teresa A.; Paulus, Martin P.; Savage, Kristen E.; Benbow, Jennifer L.; Spielfogel, Emma S.; Anderson, Cheryl A. M.; Martinez, Maria Elena; Lacey, James V.; Huang, Shi; Haiminen, Niina; Parida, Laxmi; Kim, Ho-Cheol; Gilbert, Jack A.; Sweeney, Daniel A.; Allard, Sarah M.; Swafford, Austin D.; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Zengler, Karsten; Klatt, Nichole R.; Hasty, Jeff; Berteau, Olivier; Carlin, Aaron F.; Esko, Jeffrey D.; Lewis, Nathan E.; Knight, Rob 分享 收藏
The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns 国际空间站具有由使用模式驱动的独特且极端的微生物和化学环境。 Salido, Rodolfo A.; Zhao, Haoqi Nina; Mcdonald, Daniel; Mannochio-Russo, Helena; Zuffa, Simone; Oles, Renee E.; Aron, Allegra T.; El Abiead, Yasin; Farmer, Sawyer; Gonzalez, Antonio; Martino, Cameron; Mohanty, Ipsita; Parker, Ceth W.; Patel, Lucas; Gomes, Paulo Wender Portal; Schmid, Robin; Schwartz, Tara; Zhu, Jennifer; Barratt, Michael R.; Rubins, Kathleen H.; Chu, Hiutung; Karouia, Fathi; Venkateswaran, Kasthuri; Dorrestein, Pieter C.; Knight, Rob 分享 收藏
Performance improvements and increased ruminal microbial interactions in Angus heifers via supplementation with native rumen bacteria during high-grain challenge Yang, Fan; Henniger, Madison T.; Izzo, Andrew S.; Melchior, Emily A.; Clemmons, Brooke A.; Oliver, Mary A.; Gaffney, James R.; Martino, Cameron; Ault-Seay, Taylor B.; Striluk, Miranda L.; Embree, Jordan J.; Cordero-Llarena, Juan F.; Mulon, Pierre-Yves; Anderson, David E.; Embree, Mallory M.; Myer, Phillip R. 分享 收藏
Consuming a modified Mediterranean ketogenic diet reverses the peripheral lipid signature of Alzheimer's disease in humans 食用改良的地中海生酮饮食可逆转人类阿尔茨海默氏病的外周脂质特征 Neth, Bryan J.; Huynh, Kevin; Giles, Corey; Wang, Tingting; Mellett, Natalie A.; Duong, Thy; Blach, Colette; Schimmel, Leyla; Register, Thomas C.; Blennow, Kaj; Zetterberg, Henrik; Batra, Richa; Schweickart, Annalise; Dilmore, Amanda Hazel; Martino, Cameron; Arnold, Matthias; Krumsiek, Jan; Han, Xianlin; Dorrestein, Pieter C.; Knight, Rob; Meikle, Peter J.; Craft, Suzanne; Kaddurah-Daouk, Rima 分享 收藏
TEMPTED: time-informed dimensionality reduction for longitudinal microbiome studies 诱惑: 纵向微生物组研究的时间信息降维 Shi, Pixu; Martino, Cameron; Han, Rungang; Janssen, Stefan; Buck, Gregory; Serrano, Myrna; Owzar, Kouros; Knight, Rob; Shenhav, Liat; Zhang, Anru R. 分享 收藏
Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease (vol 14, 6095, 2024) 全身代谢模型揭示了微生物组和基因组相互作用对减少尿甲酸盐水平在阿尔茨海默氏病 (卷14，6095，2024) Martinelli, Filippo; Heinken, Almut; Henning, Ann-Kristin; Ulmer, Maria A.; Hensen, Tim; Gonzalez, Antonio; Arnold, Matthias; Asthana, Sanjay; Budde, Kathrin; Engelman, Corinne D.; Estaki, Mehrbod; Grabe, Hans-Joergen; Heston, Margo B.; Johnson, Sterling; Kastenmueller, Gabi; Martino, Cameron; Mcdonald, Daniel; Rey, Federico E.; Kilimann, Ingo; Peters, Olive; Wang, Xiao; Spruth, Eike Jakob; Schneider, Anja; Fliessbach, Klaus; Wiltfang, Jens; Hansen, Niels; Buerger, Katharina; Janowitz, Daniel; Laske, Christoph; Munk, Matthias H.; Spottke, Annika; Roy, Nina; Nauck, Matthias; Teipel, Stefan; Knight, Rob; Kaddurah-Daouk, Rima F.; Bendlin, Barbara B.; Hertel, Johannes; Thiele, Ines 分享 收藏
Diversity of human salivary heparan sulfate 人类唾液硫酸乙酰肝素的多样性 Spliid, Charlotte B.; Mehta, Sanjay; Fuster, Mark M.; Martino, Cameron; Morris, Claire L.; Lee, Nharae; Florentino, Ivan; Tong, Khang; Liu, Lin; Ackermann, Gail; Knight, Rob; Esko, Jeffrey D.; de Mendoza, Tatiana Hurtado 分享 收藏
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Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease Martinelli, Filippo; Heinken, Almut; Henning, Ann-Kristin; Ulmer, Maria A.; Hensen, Tim; Gonzalez, Antonio; Arnold, Matthias; Asthana, Sanjay; Budde, Kathrin; Engelman, Corinne D.; Estaki, Mehrbod; Grabe, Hans-Joergen; Heston, Margo B.; Johnson, Sterling; Kastenmueller, Gabi; Martino, Cameron; Mcdonald, Daniel; Rey, Federico E.; Kilimann, Ingo; Peters, Olive; Wang, Xiao; Spruth, Eike Jakob; Schneider, Anja; Fliessbach, Klaus; Wiltfang, Jens; Hansen, Niels; Glanz, Wenzel; Buerger, Katharina; Janowitz, Daniel; Laske, Christoph; Munk, Matthias H.; Spottke, Annika; Roy, Nina; Nauck, Matthias; Teipel, Stefan; Knight, Rob; Kaddurah-Daouk, Rima F.; Bendlin, Barbara B.; Hertel, Johannes; Thiele, Ines 分享 收藏
Enhancing untargeted metabolomics using metadata-based source annotation Gauglitz, Julia M.; West, Kiana A.; Bittremieux, Wout; Williams, Candace L.; Weldon, Kelly C.; Panitchpakdi, Morgan; Di Ottavio, Francesca; Aceves, Christine M.; Brown, Elizabeth; Sikora, Nicole C.; Jarmusch, Alan K.; Martino, Cameron; Tripathi, Anupriya; Meehan, Michael J.; Dorrestein, Kathleen; Shaffer, Justin P.; Coras, Roxana; Vargas, Fernando; Goldasich, Lindsay DeRight; Schwartz, Tara; Bryant, MacKenzie; Humphrey, Gregory; Johnson, Abigail J.; Spengler, Katharina; Belda-Ferre, Pedro; Diaz, Edgar; McDonald, Daniel; Zhu, Qiyun; Elijah, Emmanuel O.; Wang, Mingxun; Marotz, Clarisse; Sprecher, Kate E.; Vargas-Robles, Daniela; Withrow, Dana; Ackermann, Gail; Herrera, Lourdes; Bradford, Barry J.; Marques, Lucas Maciel Mauriz; Amaral, Juliano Geraldo; Silva, Rodrigo Moreira; Veras, Flavio Protasio; Cunha, Thiago Mattar; Oliveira, Rene Donizeti Ribeiro; Louzada-Junior, Paulo; Mills, Robert H.; Piotrowski, Paulina K.; Servetas, Stephanie L.; Da Silva, Sandra M.; Jones, Christina M.; Lin, Nancy J.; Lippa, Katrice A.; Jackson, Scott A.; Daouk, Rima Kaddurah; Galasko, Douglas; Dulai, Parambir S.; Kalashnikova, Tatyana I.; Wittenberg, Curt; Terkeltaub, Robert; Doty, Megan M.; Kim, Jae H.; Rhee, Kyung E.; Beauchamp-Walters, Julia; Wright, Jr Kenneth P.; Dominguez-Bello, Maria Gloria; Manary, Mark; Oliveira, Michelli F.; Boland, Brigid S.; Lopes, Norberto Peporine; Guma, Monica; Swafford, Austin D.; Dutton, Rachel J.; Knight, Rob; Dorrestein, Pieter C. 分享 收藏
Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression Fu, Ting; Huan, Tao; Rahman, Gibraan; Zhi, Hui; Xu, Zhenjiang; Oh, Tae Gyu; Guo, Jian; Coulter, Sally; Tripathi, Anupriya; Martino, Cameron; Mccarville, Justin L.; Zhu, Qiyun; Cayabyab, Fritz; Low, Brian; He, Mingxiao; Xing, Shipei; Vargas, Fernando; Yu, Ruth T.; Atkins, Annette; Liddle, Christopher; Ayres, Janelle; Raffatellu, Manuela; Dorrestein, Pieter C.; Downes, Michael; Knight, Rob; Evans, Ronald M. 分享 收藏
Effects of a ketogenic and low-fat diet on the human metabolome, microbiome, and foodome in adults at risk for Alzheimer's disease Dilmore, Amanda Hazel; Martino, Cameron; Neth, Bryan J.; West, Kiana A.; Zemlin, Jasmine; Rahman, Gibraan; Panitchpakdi, Morgan; Meehan, Michael J.; Weldon, Kelly C.; Blach, Colette; Schimmel, Leyla; Kaddurah-Daouk, Rima; Dorrestein, Pieter C.; Knight, Rob; Craft, Suzanne 分享 收藏
Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis Brewer, Camille; Lanz, Tobias, V; Hale, Caryn R.; Sepich-Poore, Gregory D.; Martino, Cameron; Swafford, Austin D.; Carroll, Thomas S.; Kongpachith, Sarah; Blum, Lisa K.; Elliott, Serra E.; Blachere, Nathalie E.; Parveen, Salina; Fak, John; Yao, Vicky; Troyanskaya, Olga; Frank, Mayu O.; Bloom, Michelle S.; Jahanbani, Shaghayegh; Gomez, Alejandro M.; Iyer, Radhika; Ramadoss, Nitya S.; Sharpe, Orr; Chandrasekaran, Sangeetha; Kelmenson, Lindsay B.; Wang, Qian; Wong, Heidi; Torres, Holly L.; Wiesen, Mark; Graves, Dana T.; Deane, Kevin D.; Holers, V. Michael; Knight, Rob; Darnell, Robert B.; Robinson, William H.; Orange, Dana E. 分享 收藏
Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades Kodera, Sho M.; Sharma, Anukriti; Martino, Cameron; Dsouza, Melissa; Grippo, Mark; Lutz, Holly L.; Knight, Rob; Gilbert, Jack A.; Negri, Cristina; Allard, Sarah M. 分享 收藏
Acetate reprograms gut microbiota during alcohol consumption Martino, Cameron; Zaramela, Livia S.; Gao, Bei; Embree, Mallory; Tarasova, Janna; Parker, Seth J.; Wang, Yanhan; Chu, Huikuan; Chen, Peng; Lee, Kuei-Chuan; Galzerani, Daniela Domingos; Gengatharan, Jivani M.; Lekbua, Asama; Neal, Maxwell; Knight, Rob; Tsukamoto, Hidekazu; Metallo, Christian M.; Schnabl, Bernd; Zengler, Karsten 分享 收藏
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