未登录 Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation (Withdrawal of Vol 20, art no 100111, 2021) Pyke, Rachel Marty; Mellacheruvu, Dattatreya; Dea, Steven; Abbott, Charles W.; Zhang, Simo, V; Phillips, Nick A.; Harris, Jason; Bartha, Gabor; Desai, Sejal; McClory, Rena; West, John; Snyder, Michael P.; Chen, Richard; Boyle, Sean Michael 分享 收藏
RAD51AP1 regulates ALT-HDR through chromatin-directed homeostasis of TERRA Kaminski, Nicole; Wondisford, Anne R.; Kwon, Youngho; Lynskey, Michelle Lee; Bhargava, Ragini; Barroso-Gonzalez, Jonathan; Garcia-Exposito, Laura; He, Boxue; Xu, Meng; Mellacheruvu, Dattatreya; Watkins, Simon C.; Modesti, Mauro; Miller, Kyle M.; Nesvizhskii, Alexey, I; Zhang, Huaiying; Sung, Patrick; O'Sullivan, Roderick J. 分享 收藏
A machine learning algorithm with subclonal sensitivity reveals widespread pan-cancer human leukocyte antigen loss of heterozygosity Pyke, Rachel Marty; Mellacheruvu, Dattatreya; Dea, Steven; Abbott, Charles W.; McDaniel, Lee; Bhave, Devayani P.; Zhang, Simo, V; Levy, Eric; Bartha, Gabor; West, John; Snyder, Michael P.; Chen, Richard O.; Boyle, Sean Michael 分享 收藏
EXTENSIVELY VALIDATED HLA LOH ALGORITHM DEMONSTRATES AN ASSOCIATION BETWEEN HLA LOH AND GENOMIC INSTABILITY Pyke, Rachel; Dea, Steven; Mellacheruvu, Dattatreya; Abbott, Charles; Zhang, Simo; McDaniel, Lee; Levy, Eric; Bartha, Gabor; West, John; Snyder, Michael; Chen, Richard; Boyle, Sean 分享 收藏
Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation (Withdrawn Publication. See vol. 22, 2023) Pyke, Rachel Marty; Mellacheruvu, Dattatreya; Dea, Steven; Abbott, Charles W.; Zhang, Simo, V; Phillips, Nick A.; Harris, Jason; Bartha, Gabor; Desai, Sejal; McClory, Rena; West, John; Snyder, Michael P.; Chen, Richard; Boyle, Sean Michael 分享 收藏
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Kir2.1 Interactome Mapping Uncovers PKP4 as a Modulator of the Kir2.1-Regulated Inward Rectifier Potassium Currents Park, Sung-Soo; Ponce-Balbuena, Daniela; Kuick, Rork; Guerrero-Serna, Guadalupe; Yoon, Justin; Mellacheruvu, Dattatreya; Conlon, Kevin P.; Basrur, Venkatesha; Nesvizhskii, Alexey I.; Jalife, Jose; Rual, Jean-Francois 分享 收藏
Pan-cancer characterization of the tumor and immune microenvironment facilitates identification of cancer-specific biological signatures Boyle, Sean Michael; Abbott, Charles; Levy, Eric; Pyke, Rachel Marty; Mellacheruvu, Dattatreya; Zhang, Simo; Tan, Mengyao; McClory, Rena; West, John; Chen, Richard 分享 收藏
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Sensitive HLA loss of heterozygosity detection reveals allele-specific neoantigen expansion as resistance mechanism to anti-PD-1 therapy Pyke, Rachel Marty; Abbott, Charles; Mellacheruvu, Dattatreya; Zhang, Simo, V; Bedi, Nikita; Colevas, A. Dimitrios; Sunwoo, John; West, John; Chen, Richard; Boyle, Sean Michael 分享 收藏
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Allele-specific RNA interference prevents neuropathy in Charcot-Marie-Tooth disease type 2D mouse models Morelli, Kathryn H.; Griffin, Laurie B.; Pyne, Nettie K.; Wallace, Lindsay M.; Fowler, Allison M.; Oprescu, Stephanie N.; Takase, Ryuichi; Wei, Na; Meyer-Schuman, Rebecca; Mellacheruvu, Dattatreya; Kitzman, Jacob O.; Kocen, Samuel G.; Hines, Timothy J.; Spaulding, Emily L.; Lupski, James R.; Nesvizhskii, Alexey; Mancias, Pedro; Butler, Ian J.; Yang, Xiang-Lei; Hou, Ya-Ming; Antonellis, Anthony; Harper, Scott Q.; Burgess, Robert W. 分享 收藏
Functions of the COPII gene paralogs SEC23A and SEC23B are interchangeable in vivo Khoriaty, Rami; Hesketh, Geoffrey G.; Bernard, Amelie; Weyand, Angela C.; Mellacheruvu, Dattatreya; Zhu, Guojing; Hoenerhoff, Mark J.; McGee, Beth; Everett, Lesley; Adams, Elizabeth J.; Zhang, Bin; Saunders, Thomas L.; Nesvizhskii, Alexey I.; Klionsky, Daniel J.; Shavit, Jordan A.; Gingras, Anne-Claude; Ginsburg, David 分享 收藏
HSC70 is a chaperone for wild-type and mutant cardiac myosin binding protein C Glazier, Amelia A.; Hafeez, Neha; Mellacheruvu, Dattatreya; Basrur, Venkatesha; Nesvizhskii, Alexey I.; Lee, Lap Man; Shao, Hao; Tang, Vi; Yob, Jaime M.; Gestwicki, Jason E.; Helms, Adam S.; Day, Sharlene M. 分享 收藏
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Large-Scale Analysis of Kinase Signaling in Yeast Pseudohyphal Development Identifies Regulation of Ribonucleoprotein Granules Shively, Christian A.; Kweon, Hye Kyong; Norman, Kaitlyn L.; Mellacheruvu, Dattatreya; Xu, Tao; Sheidy, Daniel T.; Dobry, Craig J.; Sabath, Ivan; Cosky, Eric E. P.; Tran, Elizabeth J.; Nesvizhskii, Alexey; Andrews, Philip C.; Kumar, Anuj 分享 收藏
Targeting the MLL complex in castration-resistant prostate cancer Malik, Rohit; Khan, Amjad P.; Asangani, Irfan A.; Cieslik, Marcin; Prensner, John R.; Wang, Xiaoju; Iyer, Matthew K.; Jiang, Xia; Borkin, Dmitry; Escara-Wilke, June; Stender, Rachell; Wu, Yi-Mi; Niknafs, Yashar S.; Jing, Xiaojun; Qiao, Yuanyuan; Palanisamy, Nallasivam; Kunju, Lakshmi P.; Krishnamurthy, Pranathi M.; Yocum, Anastasia K.; Mellacheruvu, Dattatreya; Nesvizhskii, Alexey I.; Cao, Xuhong; Dhanasekaran, Saravana M.; Feng, Felix Y.; Grembecka, Jolanta; Cierpicki, Tomasz; Chinnaiyan, Arul M. 分享 收藏
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The CRAPome: a contaminant repository for affinity purification-mass spectrometry data CRAPome: 用于亲和纯化-质谱数据的污染物存储库 Mellacheruvu, Dattatreya; Wright, Zachary; Couzens, Amber L.; Lambert, Jean-Philippe; St-Denis, Nicole A.; Li, Tuo; Miteva, Yana V.; Hauri, Simon; Sardiu, Mihaela E.; Low, Teck Yew; Halim, Vincentius A.; Bagshaw, Richard D.; Hubner, Nina C.; Al-Hakim, Abdallah; Bouchard, Annie; Faubert, Denis; Fermin, Damian; Dunham, Wade H.; Goudreault, Marilyn; Lin, Zhen-Yuan; Badillo, Beatriz Gonzalez; Pawson, Tony; Durocher, Daniel; Coulombe, Benoit; Aebersold, Ruedi; Superti-Furga, Giulio; Colinge, Jacques; Heck, Albert J. R.; Choi, Hyungwon; Gstaiger, Matthias; Mohammed, Shabaz; Cristea, Ileana M.; Bennett, Keiryn L.; Washburn, Mike P.; Raught, Brian; Ewing, Rob M.; Gingras, Anne-Claude; Nesvizhskii, Alexey I. 分享 收藏
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