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S. F. Schaffner

Broad Institute of Harvard and MIT

79H指数
436论文数
7.3W被引数
收录论文 68
发表时间
Scalable near-real-time Bayesian phylogenetics for outbreaks with Delphy可扩展的近实时贝叶斯系统发育学方法(Delphy)用于疫情爆发分析
errNature
IF48.5
err2026-09-16
err0
errOAAI
errPatrick Varilly; Mark Schifferli; Katherine Yang; Paul Cronan; Ivan Specht; Tim Burcham; Olivia Glennon; Olivia Jacks; Ellory Laning; Libby Marrs; Kyle Oba; Shannon Yeung; Karlie Wenran Zhao; Edyth Parker; Ifeanyi Omah; Jonathan E. Pekar; Laura Luebbert; Kristian G. Andersen; Daniel J. Park; Stephen F. Schaffner; Bronwyn L. MacInnis; Christian Happi; Jacob E. Lemieux; Al Ozonoff; Michael Mitzenmacher; Ben Fry; Pardis C. Sabeti
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Bilateral Internal Carotid Artery Agenesis
err2026-01-01
err0
PREAI
errMusick, Shane; Schaffner, Stephen
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Partial High Grade Duodenal Obstruction Due To Annular Pancreas in an Adult成人环形胰腺导致的十二指肠部分性高等级梗阻
err2025-10-01
err0
PREAI
errHerekar, Anam; Sharma, Karan; Mcnally, John N.; Hardell, Davis; Marneni, Rishik; Schaffner, Stephen; Sharma, Amol
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A Rare Case of Hemosuccus Pancreaticus Caused by Pancreatic Pseudoaneurysm一例由胰腺假性动脉瘤引起的罕见胰腺出血病例
err2025-10-01
err0
PREAI
errHerekar, Anam; Mcnally, John N.; Sharma, Karan; Marneni, Rishik; Hardell, Davis; Barnes, Angela; Schaffner, Stephen; Sharma, Amol
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MalKinID: A classification model for identifying malaria parasite genealogical relationships using identity-by-descent
err2024-11-23
err0
errOAAI
errWong, Wesley; Wang, Lea; Schaffner, Stephen F.; Li, Xue; Cheeseman, Ian; Anderson, Timothy J. C.; Vaughan, Ashley; Ferdig, Michael; Volkman, Sarah K.; Hartl, Daniel L.; Wirth, Dyann F.
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Genotypic analysis of RTS,S/AS01E malaria vaccine efficacy against parasite infection as a function of dosage regimen and baseline malaria infection status in children aged 5-17 months in Ghana and Kenya: a longitudinal phase 2b randomised controlled trial
err2024-09-01
err3
errOAAI
errJuraska, Michal; Early, Angela M.; Li, Li; Schaffner, Stephen F.; Lievens, Marc; Khorgade, Akanksha; Simpkins, Brian; Hejazi, Nima S.; Benkeser, David; Wang, Qi; Mercer, Laina; Adjei, Samuel; Agbenyega, Tsiri; Anderson, Scott; Ansong, Daniel; Bii, Dennis K.; Buabeng, Patrick B. Y.; English, Sean; Fitzgerald, Nicholas; Grimsby, Jonna; Kariuki, Simon K.; Otieno, Kephas; Roman, Francois; Samuels, Aaron M.; Westercamp, Nelli; Ockenhouse, Christian F.; Ofori-Anyinam, Opokua; Lee, Cynthia K.; Macinnis, Bronwyn L.; Wirth, Dyann F.; Gilbert, Peter B.; Neafsey, Daniel E.
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Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing使用宏基因组测序调查塞内加尔非疟疾性发热性疾病的病因
err2024-01-25
err2
errOAAI
errLevine, Zoe C.; Sene, Aita; Mkandawire, Winnie; Deme, Awa B.; Ndiaye, Tolla; Sy, Mouhamad; Gaye, Amy; Diedhiou, Younouss; Mbaye, Amadou M.; Ndiaye, Ibrahima M.; Gomis, Jules; Ndiop, Medoune; Sene, Doudou; Faye Paye, Marietou; Macinnis, Bronwyn L.; Schaffner, Stephen F.; Park, Daniel J.; Badiane, Aida S.; Colubri, Andres; Ndiaye, Mouhamadou; Sy, Ngayo; Sabeti, Pardis C.; Ndiaye, Daouda; Siddle, Katherine J.
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Malaria surveillance reveals parasite relatedness, signatures of selection, and correlates of transmission across Senegal
err2023-11-10
err5
errOAAI
errSchaffner, Stephen F.; Badiane, Aida; Khorgade, Akanksha; Ndiop, Medoune; Gomis, Jules; Wong, Wesley; Ndiaye, Yaye Die; Diedhiou, Younouss; Thwing, Julie; Seck, Mame Cheikh; Early, Angela; Sy, Mouhamad; Deme, Awa; Diallo, Mamadou Alpha; Sy, Ngayo; Sene, Aita; Ndiaye, Tolla; Sow, Djiby; Dieye, Baba; Ndiaye, Ibrahima Mbaye; Gaye, Amy; Ndiaye, Aliou; Battle, Katherine E.; Proctor, Joshua L.; Bever, Caitlin; Fall, Fatou Ba; Diallo, Ibrahima; Gaye, Seynabou; Sene, Doudou; Hartl, Daniel L.; Wirth, Dyann F.; Macinnis, Bronwyn; Ndiaye, Daouda; Volkman, Sarah K.
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Three linked variants have opposing regulatory effects on isovaleryl-CoA dehydrogenase gene expression
err2023-10-31
err1
errOAAI
errBrown, Elizabeth A.; Kales, Susan; Boyle, Michael James; Vitti, Joseph; Kotliar, Dylan; Schaffner, Steve; Tewhey, Ryan; Sabeti, Pardis C.
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Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria
err2023-08-04
err7
errOAAI
errOguzie, Judith U.; Petros, Brittany A.; Oluniyi, Paul E.; Mehta, Samar B.; Eromon, Philomena E.; Nair, Parvathy; Adewale-Fasoro, Opeoluwa; Ifoga, Peace Damilola; Odia, Ikponmwosa; Pastusiak, Andrzej; Gbemisola, Otitoola Shobi; Aiyepada, John Oke; Uyigue, Eghosasere Anthonia; Edamhande, Akhilomen Patience; Blessing, Osiemi; Airende, Michael; Tomkins-Tinch, Christopher; Qu, James; Stenson, Liam; Schaffner, Stephen F.; Oyejide, Nicholas; Ajayi, Nnenna A.; Ojide, Kingsley; Ogah, Onwe; Abejegah, Chukwuyem; Adedosu, Nelson; Ayodeji, Oluwafemi; Liasu, Ahmed A.; Okogbenin, Sylvanus; Okokhere, Peter O.; Park, Daniel J.; Folarin, Onikepe A.; Komolafe, Isaac; Ihekweazu, Chikwe; Frost, Simon D. W.; Jackson, Ethan K.; Siddle, Katherine J.; Sabeti, Pardis C.; Happi, Christian T.
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Viral Lineages in the 2022 RSV Surge in the United States
err2023-04-06
err44
errOAAI
errAdams, Gordon; Moreno, Gage K.; Petros, Brittany A.; Uddin, Rockib; Levine, Zoe; Kotzen, Ben; Messer, Katelyn S.; Dobbins, Sabrina T.; DeRuff, Katherine C.; Loreth, Christine M.; Brock-Fisher, Taylor; Schaffner, Stephen F.; Chaluvadi, Sushma; Kanjilal, Sanjat; Luban, Jeremy; Ozonoff, Al; Park, Daniel J.; Turbett, Sarah E.; Siddle, Katherine J.; MacInnis, Bronwyn L.; Sabeti, Pardis C.; Lemieux, Jacob E.
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Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria
err2023-02-13
err10
errOAAI
errOlawoye, Idowu. B. B.; Oluniyi, Paul. E. E.; Oguzie, Judith. U. U.; Uwanibe, Jessica. N. N.; Kayode, Tolulope. A. A.; Olumade, Testimony. J. J.; Ajogbasile, Fehintola. V. V.; Parker, Edyth; Eromon, Philomena. E. E.; Abechi, Priscilla; Sobajo, Tope. A. A.; Ugwu, Chinedu. A. A.; George, Uwem. E. E.; Ayoade, Femi; Akano, Kazeem; Oyejide, Nicholas. E. E.; Nosamiefan, Iguosadolo; Fred-Akintunwa, Iyanuoluwa; Adedotun-Sulaiman, Kemi; Brimmo, Farida. B. B.; Adegboyega, Babatunde. B. B.; Philip, Courage; Adeleke, Richard. A. A.; Chukwu, Grace. C. C.; Ahmed, Muhammad. I. I.; Ope-Ewe, Oludayo. O. O.; Otitoola, Shobi. G. G.; Ogunsanya, Olusola. A. A.; Saibu, Mudasiru. F. F.; Sijuwola, Ayotunde. E. E.; Ezekiel, Grace. O. O.; John, Oluwagboadurami. G. G.; Akin-John, Julie. O. O.; Akinlo, Oluwasemilogo. O. O.; Fayemi, Olanrewaju. O. O.; Ipaye, Testimony. O. O.; Nwodo, Deborah. C. C.; Omoniyi, Abolade. E. E.; Omwanghe, Iyobosa. B. B.; Terkuma, Christabel. A. A.; Okolie, Johnson; Ayo-Ale, Olubukola; Ikponmwosa, Odia; Benevolence, Ebo; Naregose, Grace. O. O.; Patience, Akhilomen. E. E.; Blessing, Osiemi; Micheal, Airende; Jacqueline, Agbukor; Aiyepada, John. O. O.; Ebhodaghe, Paulson; Racheal, Omiunu; Rita, Esumeh; Rosemary, Giwa. E. E.; Solomon, Ehikhametalor; Anieno, Ekanem; Edna, Yerumoh; Chris, Aire. O. O.; Donatus, Adomeh. I. I.; Ogbaini-Emovon, Ephraim; Tatfeng, Mirabeau. Y. Y.; Omunakwe, Hannah. E. E.; Bob-Manuel, Mienye; Ahmed, Rahaman. A. A.; Onwuamah, Chika. K. K.; Shaibu, Joseph. O. O.; Okwuraiwe, Azuka; Ataga, Anthony. E. E.; Bock-Oruma, Andrew; Daramola, Funmi; Yusuf, Ibrahim. F. F.; Fajola, Akinwumi; Ntia, Nsikak-Abasi; Ekpo, Julie. J. J.; Moses, Anietie. E. E.; Moore-Igwe, Beatrice. W. W.; Fakayode, Oluwatosin. E. E.; Akinola, Monilade; Kida, Ibrahim. M. M.; Oderinde, Bamidele. S. S.; Wudiri, Zara. W. W.; Adeyemi, Oluwapelumi. O. O.; Akanbi, Olusola. A. A.; Ahumibe, Anthony; Akinpelu, Afolabi; Ayansola, Oyeronke; Babatunde, Olajumoke; Omoare, Adesuyi. A. A.; Chukwu, Chimaobi; Mba, Nwando. G. G.; Omoruyi, Ewean. C. C.; Olisa, Olasunkanmi; Akande, Olatunji. K. K.; Nwafor, Ifeanyi. E. E.; Ekeh, Matthew. A. A.; Ndoma, Erim; Ewah, Richard. L. L.; Duruihuoma, Rosemary. O. K. O.; Abu, Augustine; Odeh, Elizabeth; Onyia, Venatius; Ojide, Chiedozie K.; Okoro, Sylvanus; Igwe, Daniel; Ogah, Emeka. O. O.; Khan, Kamran; Ajayi, Nnennaya. A. A.; Ugwu, Collins. N. N.; Ukwaja, Kingsley. N. N.; Ugwu, Ngozi. I. I.; Abejegah, Chukwuyem; Adedosu, Nelson; Ayodeji, Olufemi; Liasu, Ahmed. A. A.; Isamotu, Rafiu. O. O.; Gadzama, Galadima; Petros, Brittany. A. A.; Siddle, Katherine. J. J.; Schaffner, Stephen. F. F.; Akpede, George; Erameh, Cyril Oshomah; Baba, Marycelin. M. M.; Oladiji, Femi; Audu, Rosemary; Ndodo, Nnaemeka; Fowotade, Adeola; Okogbenin, Sylvanus; Okokhere, Peter. O. O.; Park, Danny. J. J.; Mcannis, Bronwyn. L. L.; Adetifa, Ifedayo. M. M.; Ihekweazu, Chikwe; Salako, Babatunde. L. L.; Tomori, Oyewale; Happi, Anise. N. N.; Folarin, Onikepe. A. A.; Andersen, Kristian. G. G.; Sabeti, Pardis. C. C.; Happi, Christian. T. T.
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High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection
err2023-02-02
err12
errOAAI
errNormandin, Erica; Rudy, Melissa; Barkas, Nikolaos; Schaffner, Stephen F.; Levine, Zoe; Padera, Robert F., Jr.; Babadi, Mehrtash; Mukerji, Shibani S.; Park, Daniel J.; MacInnis, Bronwyn L.; Siddle, Katherine J.; Sabeti, Pardis C.; Solomon, Isaac H.
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Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework
errMED
IF11.8
err2022-12-01
err24
errOAAI
errPetros, Brittany A.; Paull, Jillian S.; Tomkins-Tinch, Christopher H.; Loftness, Bryn C.; DeRuff, Katherine C.; Nair, Parvathy; Gionet, Gabrielle L.; Benz, Aaron; Brock-Fisher, Taylor; Hughes, Michael; Yurkovetskiy, Leonid; Mulaudzi, Shandukani; Leenerman, Emma; Nyalile, Thomas; Moreno, Gage K.; Specht, Ivan; Sani, Kian; Adams, Gordon; Babet, Simone V.; Baron, Emily; Blank, Jesse T.; Boehm, Chloe; Botti-Lodovico, Yolanda; Brown, Jeremy; Buisker, Adam R.; Burcham, Timothy; Chylek, Lily; Cronan, Paul; Dauphin, Ann; Desreumaux, Valentine; Doss, Megan; Flynn, Belinda; Gladden-Young, Adrianne; Glennon, Olivia; Harmon, Hunter D.; Hook, Thomas V.; Kary, Anton; King, Clay; Loreth, Christine; Marrs, Libby; McQuade, Kyle J.; Milton, Thorsen T.; Mulford, Jada M.; Oba, Kyle; Pearlman, Leah; Schifferli, Mark; Schmidt, Madelyn J.; Tandus, Grace M.; Tyler, Andy; Vodzak, Megan E.; Bevill, Kelly Krohn; Colubri, Andres; MacInnis, Bronwyn L.; Ozsoy, A. Zeynep; Parrie, Eric; Sholtes, Kari; Siddle, Katherine J.; Fry, Ben; Luban, Jeremy; Park, Daniel J.; Marshall, John; Bronson, Amy; Schaffner, Stephen F.; Sabeti, Pardis C.
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Distinguishing Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Persistence and Reinfection: A Retrospective Cohort Study区分新型冠状病毒 (SARS-CoV-2) 持续性和再感染: 一项回顾性队列研究
err2022-10-21
err8
errOAAI
errTurbett, Sarah E.; Tomkins-Tinch, Christopher H.; Anahtar, Melis N.; Dugdale, Caitlin M.; Hyle, Emily P.; Shenoy, Erica S.; Shaw, Bennett; Egbuonu, Kenechukwu; Bowman, Kathryn A.; Zachary, Kimon C.; Adams, Gordon C.; Hooper, David C.; Ryan, Edward T.; LaRocque, Regina C.; Bassett, Ingrid, V; Triant, Virginia A.; Siddle, Katherine J.; Rosenberg, Eric; Sabeti, Pardis C.; Schaffner, Stephen F.; MacInnis, Bronwyn L.; Lemieux, Jacob E.; Charles, Richelle C.
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RH: a genetic metric for measuring intrahost Plasmodium falciparum relatedness and distinguishing cotransmission from superinfection
err2022-09-10
err8
errOAAI
errWong, Wesley; Volkman, Sarah; Daniels, Rachel; Schaffner, Stephen; Sy, Mouhamad; Ndiaye, Yaye Die; Badiane, Aida S.; Deme, Awa B.; Diallo, Mamadou Alpha; Gomis, Jules; Sy, Ngayo; Ndiaye, Daouda; Wirth, Dyann F.; Hartl, Daniel L.
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Plasmodium falciparum genomic surveillance reveals spatial and temporal trends, association of genetic and physical distance, and household clustering
err2022-01-18
err13
errOAAI
errSy, Mouhamad; Deme, Awa B.; Warren, Joshua L.; Early, Angela; Schaffner, Stephen; Daniels, Rachel F.; Dieye, Baba; Ndiaye, Ibrahima Mbaye; Diedhiou, Younous; Mbaye, Amadou Moctar; Volkman, Sarah K.; Hartl, Daniel L.; Wirth, Dyann F.; Ndiaye, Daouda; Bei, Amy K.
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The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response
err2021-08-13
err7
errOAAI
errBotti-Lodovico, Yolanda; Nair, Parvathy; Nosamiefan, Dolo; Stremlau, Matthew; Schaffner, Stephen; Agignoae, Sebastian V.; Aiyepada, John Oke; Ajogbasile, Fehintola V.; Akpede, George O.; Alhasan, Foday; Andersen, Kristian G.; Asogun, Danny A.; Ayodeji, Oladele Oluwafemi; Badiane, Aida S.; Barnes, Kayla; Bauer, Matthew R.; Bell-Kareem, Antoinette; Benard, Muoebonam Ekene; Benevolence, Ebo Ohomoime; Blessing, Osiemi; Boehm, Chloe K.; Boisen, Matthew L.; Bond, Nell G.; Branco, Luis M.; Butts, Michael J.; Carter, Amber; Colubri, Andres; Deme, Awa B.; DeRuff, Katherine C.; Diedhiou, Younousse; Edamhande, Akhilomen Patience; Elhamoumi, Siham; Engel, Emily J.; Eromon, Philomena; Fallah, Mosoka; Folarin, Onikepe A.; Fry, Ben; Garry, Robert; Gaye, Amy; Gbakie, Michael; Gevao, Sahr M.; Gionet, Gabrielle; Gladden-Young, Adrianne; Goba, Augustine; Gomis, Jules Francois; Happi, Anise N.; Houghton, Mary; Ihekwuazu, Chikwe; Iruolagbe, Christopher Ojemiega; Jackson, Jonathan; Jalloh, Simbirie; Johnson, Jeremy; Kanneh, Lansana; Kayode, Adeyemi; Kemball, Molly; Kingsley, Ojide Chiedozie; Koroma, Veronica; Kotliar, Dylan; Mehta, Samar; Metsky, Hayden C.; Michael, Airende; Mirhashemi, Marzieh Ezzaty; Modjarrad, Kayvon; Momoh, Mambu; Myhrvold, Cameron A.; Naregose, Okonofua Grace; Ndiaye, Tolla; Ndiaye, Mouhamadou; Ndiaye, Aliou; Normandin, Erica; Odia, Ikponmwosa; Oguzie, Judith Uche; Okogbenin, Sylvanus A.; Okokhere, Peter O.; Okolie, Johnson; Olawoye, Idowu B.; Olumade, Testimony J.; Oluniyi, Paul E.; Omoregie, Omigie; Park, Daniel J.; Paye, Marietou Faye; Petros, Brittany; Philippakis, Anthony A.; Priscilla, Abechi; Ricks, Alan; Rimoin, Anne; Sandi, John Demby; Schieffelin, John S.; Schreiber, Monica; Seck, Mame Cheikh; Siddiqui, Sameed; Siddle, Katherine; Smither, Allison R.; Sy, Mouhamad; Sy, Ngayo; Tomkins-Tinch, Christopher H.; Tomori, Oyewale; Ugwu, Chinedu; Uwanibe, Jessica N.; Uyigue, Eghosasere Anthonia; Victoria, Dada Ireti; Vinze, Anika; Vodzak, Megan E.; Welch, Nicole; Wurie, Haja Isatta; Zoumarou, Daba; Grant, Donald S.; Ndiaye, Daouda; MacInnis, Bronwyn; Sabeti, Pardis C.; Happi, Christian
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Repeated mutation of a developmental enhancer contributed to human thermoregulatory evolution
err2021-04-13
err27
errOAAI
errAldea, Daniel; Atsuta, Yuji; Kokalari, Blerina; Schaffner, Stephen F.; Prasasya, Rexxi D.; Aharoni, Adam; Dingwall, Heather L.; Warder, Bailey; Kamberov, Yana G.
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Biomarkers to Distinguish Bacterial From Viral Pediatric Clinical Pneumonia in a Malaria-Endemic Setting
err2021-02-03
err11
errOAAI
errGillette, Michael A.; Mani, D. R.; Uschnig, Christopher; Pelle, Karell G.; Madrid, Lola; Acacio, Sozinho; Lanaspa, Miguel; Alonso, Pedro; Valim, Clarissa; Carr, Steven A.; Schaffner, Stephen F.; MacInnis, Bronwyn; Milner, Danny A.; Bassat, Quique; Wirth, Dyann F.
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