Ivan Anishchenko - Publications, H-index & Citations

Ivan Anishchenko

university of washington

35H指数

86论文数

1.5W被引数

收录论文 28

发表时间

Small-molecule binding and sensing with a designed protein family 与设计的蛋白质家族的小分子结合和传感

Nature Communications

IF15.7

2026-03-28

OAAI

Gyu Rie Lee; Samuel J. Pellock; Christoffer Norn; Doug Tischer; Justas Dauparas; Ivan Anishchenko; Jaron A. M. Mercer; Alex Kang; Asim K. Bera; Hannah Nguyen; Evans Brackenbrough; Banumathi Sankaran; Inna Goreshnik; Dionne Vafeados; Nicole Roullier; Hannah L. Han; Brian Coventry; Hugh K. Haddox; David R. Liu; Andy Hsien-Wei Yeh; David Baker

Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA 使用RoseTTAFoldNA准确预测蛋白质-核酸复合物

NATURE METHODS

IF32.1

2023-11-23

OAAI

Baek, Minkyung; Mchugh, Ryan; Anishchenko, Ivan; Jiang, Hanlun; Baker, David; DiMaio, Frank

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs 表征和解释没有已知结构或结构同源物的蛋白质中疾病相关突变的影响

BRIEFINGS IN BIOINFORMATICS

IF7.7

2022-06-01

OAAI

Sen, Neeladri; Anishchenko, Ivan; Bordin, Nicola; Sillitoe, Ian; Velankar, Sameer; Baker, David; Orengo, Christine

De novo protein design by deep network hallucination 基于深度网络幻觉的从头蛋白质设计

NATURE

IF48.5

2021-12-01

295

OAAI

Anishchenko, Ivan; Pellock, Samuel J.; Chidyausiku, Tamuka M.; Ramelot, Theresa A.; Ovchinnikov, Sergey; Hao, Jingzhou; Bafna, Khushboo; Norn, Christoffer; Kang, Alex; Bera, Asim K.; DiMaio, Frank; Carter, Lauren; Chow, Cameron M.; Montelione, Gaetano T.; Baker, David

The trRosetta server for fast and accurate protein structure prediction trRosetta服务器用于快速准确的蛋白质结构预测

NATURE PROTOCOLS

IF16

2021-11-10

348

OAAI

Du, Zongyang; Su, Hong; Wang, Wenkai; Ye, Lisha; Wei, Hong; Peng, Zhenling; Anishchenko, Ivan; Baker, David; Yang, Jianyi

Protein oligomer modeling guided by predicted interchain contacts in CASP14

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2021-08-23

OAAI

Baek, Minkyung; Anishchenko, Ivan; Park, Hahnbeom; Humphreys, Ian R.; Baker, David

Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2021-08-17

OAAI

Anishchenko, Ivan; Baek, Minkyung; Park, Hahnbeom; Hiranuma, Naozumi; Kim, David E.; Dauparas, Justas; Mansoor, Sanaa; Humphreys, Ian R.; Baker, David

Protein sequence design by conformational landscape optimization 通过构象景观优化进行蛋白质序列设计

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-03-12

107

OAAI

Norn, Christoffer; Wicky, Basile I. M.; Juergens, David; Liu, Sirui; Kim, David; Tischer, Doug; Koepnick, Brian; Anishchenko, Ivan; Players, Foldit; Baker, David; Ovchinnikov, Sergey

Improved protein structure refinement guided by deep learning based accuracy estimation

NATURE COMMUNICATIONS

IF15.7

2021-02-26

150

OAAI

Hiranuma, Naozumi; Park, Hahnbeom; Baek, Minkyung; Anishchenko, Ivan; Dauparas, Justas; Baker, David

In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19

SCIENTIFIC REPORTS

IF3.9

2021-02-22

OAAI

Phan, Isabelle Q.; Subramanian, Sandhya; Kim, David; Murphy, Michael; Pettie, Deleah; Carter, Lauren; Anishchenko, Ivan; Barrett, Lynn K.; Craig, Justin; Tillery, Logan; Shek, Roger; Harrington, Whitney E.; Koelle, David M.; Wald, Anna; Veesler, David; King, Neil; Boonyaratanakornkit, Jim; Isoherranen, Nina; Greninger, Alexander L.; Jerome, Keith R.; Chu, Helen; Staker, Bart; Stewart, Lance; Myler, Peter J.; Van Voorhis, Wesley C.

Structural basis for autophagy inhibition by the human Rubicon-Rab7 complex 人Rubicon-Rab7复合物抑制自噬的结构基础

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-07-06

OAAI

Bhargava, Hersh K.; Tabata, Keisuke; Byck, Jordan M.; Hamasaki, Maho; Farrell, Daniel P.; Anishchenko, Ivan; DiMaio, Frank; Im, Young Jun; Yoshimori, Tamotsu; Hurley, James H.

Improved protein structure prediction using predicted interresidue orientations 使用预测的残基间方向改进蛋白质结构预测

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-01-02

971

OAAI

Yang, Jianyi; Anishchenko, Ivan; Park, Hahnbeom; Peng, Zhenling; Ovchinnikov, Sergey; Baker, David

Template-based modeling by ClusPro in CASP13 and the potential for using co-evolutionary information in docking

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2019-10-01

OAAI

Porter, Kathryn A.; Padhorny, Dzmitry; Desta, Israel; Ignatov, Mikhail; Beglov, Dmitri; Kotelnikov, Sergei; Sun, Zhuyezi; Alekseenko, Andrey; Anishchenko, Ivan; Cong, Qian; Ovchinnikov, Sergey; Baker, David; Vajda, Sandor; Kozakov, Dima

High-accuracy refinement using Rosetta in CASP13

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2019-08-05

OAAI

Park, Hahnbeom; Lee, Gyu Rie; Kim, David E.; Anishchenko, Ivan; Cong, Qian; Baker, David

Gene ontology improves template selection in comparative protein docking 基因本体论改进比较蛋白质对接中的模板选择

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2018-12-27

OAAI

Hadarovich, Anna; Anishchenko, Ivan; Tuzikov, Alexander V.; Kundrotas, Petras J.; Vakser, Ilya A.