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STAMP: Single-cell transcriptomics analysis and multimodal profiling through imaging

delete2025-06-17
delete0
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OA
AI
E
Emanuele Pitino
A
Anna Pascual Reguant
F
Felipe Segato-Dezem
K
Kellie Wise
I
Irepan Salvador‐Martínez
H
Helena L. Crowell
M
Maycon Marção
M
Max Ruiz
E
Elise T. Courtois
W
William F. Flynn
S
Santhosh Sivajothi
E
Emily Soja
G
Ginevra Caratù
G
German Atzin Mora-Roldan
B
B. Kate Dredge
Y
Yutian Liu
H
Hannah Chasteen
M
Monika Mohenska
J
Juan C. Nieto
R
Raymond K. H. Yip
R
Ruvimbo D Mishi
J
J. M. Polo
M
Mohmed Abdalfttah
A
Adrienne E. Sullivan
J
Jasmine Plummer *
H
Holger Heyn *
L
Luciano G. Martelotto *
DOI:10.1016/j.cell.2025.05.027delete
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Abstract

Abstract

En 中文
• STAMP enables scalable and flexible single-cell genomics by imaging • Cost-efficient single-cell profiling of millions of cells without sequencing • Multimodal single-cell analysis of RNA, protein, cell structure, and morphology • Versatile application in high-throughput research and clinical settings
Keywords:
single cell
imaging
transcriptomics
proteomics
genomics
multimodal
phenotyping
cell atlas
stem cells
circulating tumor cells

Journal

Cell cover
Cell
IF:
42.5
Papers:
1.2K
Citations:
31.1W

Organization

T
The University of Adelaide
Scholars:
993
Papers: 452
Citations: 4
C
centro nacional de análisis genómico (cnag)
Scholars:
57
Papers: 20
Citations: 0
S
spanish national cancer research centre (cnio)
Scholars:
70
Papers: 18
Citations: 0
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Cited Papers

Cited Papers

Orchestrating single-cell analysis with Bioconductor
err2019-12-02
err438
errOAAI
errAmezquita, Robert A.; Lun, Aaron T. L.; Becht, Etienne; Carey, Vince J.; Carpp, Lindsay N.; Geistlinger, Ludwig; Marini, Federico; Rue-Albrecht, Kevin; Risso, Davide; Soneson, Charlotte; Waldron, Levi; Pages, Herve; Smith, Mike L.; Huber, Wolfgang; Morgan, Martin; Gottardo, Raphael; Hicks, Stephanie C.
errShare
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Museum of spatial transcriptomics
err2022-03-10
err419
errOAAI
errMoses, Lambda; Pachter, Lior
errShare
errSave
Construction of a cross-species cell landscape at single-cell level
err2022-08-05
err45
errOAAI
errWang, Renying; Zhang, Peijing; Wang, Jingjing; Ma, Lifeng; Weigao, E.; Suo, Shengbao; Jiang, Mengmeng; Li, Jiaqi; Chen, Haide; Sun, Huiyu; Fei, Lijiang; Zhou, Ziming; Zhou, Yincong; Chen, Yao; Zhang, Weiqi; Wang, Xinru; Mei, Yuqing; Sun, Zhongyi; Yu, Chengxuan; Shao, Jikai; Fu, Yuting; Xiao, Yanyu; Ye, Fang; Fang, Xing; Wu, Hanyu; Guo, Qile; Fang, Xiunan; Li, Xia; Gao, Xianzhi; Wang, Dan; Xu, Peng-Fei; Zeng, Rui; Xu, Gang; Zhu, Lijun; Wang, Lie; Qu, Jing; Zhang, Dan; Ouyang, Hongwei; Huang, He; Chen, Ming; Ng, Shyh-Chang; Liu, Guang-Hui; Yuan, Guo-Cheng; Guo, Guoji; Han, Xiaoping
errShare
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Doublet identification in single-cell sequencing data using scDblFinder
err2021-09-28
err0
PREAI
errPierre-Luc Germain; Aaron Lun; Will Macnair; Mark D. Robinson
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Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
err2017-01-14
err0
errOAAI
errDavis J McCarthy; Kieran R Campbell; Aaron T L Lun; Quin F Wills
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Spatially Resolved Single-Cell Omics: Methods, Challenges, and Future Perspectives
err2024-08-23
err4
PREAI
errDezem, Felipe Segato; Arjumand, Wani; DuBose, Hannah; Morosini, Natalia Silva; Plummer, Jasmine
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Approaches for single-cell RNA sequencing across tissues and cell types
err2023-04-16
err8
errOAAI
errSant, Pooja; Rippe, Karsten; Mallm, Jan-Philipp
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A method to recapitulate early embryonic spatial patterning in human embryonic stem cells
err2014-06-29
err670
errOAAI
errWarmflash, Aryeh; Sorre, Benoit; Etoc, Fred; Siggia, Eric D.; Brivanlou, Ali H.
errShare
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NIH Image to ImageJ: 25 years of image analysis
err2012-06-28
err5.0W
errOAAI
errSchneider, Caroline A.; Rasband, Wayne S.; Eliceiri, Kevin W.
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