arrow
Back
H

Helena L. Crowell

swiss institute of bioinformatics

17H-index
60Paper Count
2.2KCitation Count
Published Papers 15
Publication Date
Differential detection workflows for multi-sample single-cell RNA-seq data
err2025-10-08
err0
errOAAI
errJeroen Gilis; Laura Perin; Milan Malfait; Helena L. Crowell; Koen Van den Berge; Alemu Takele Assefa; Bie Verbist; Davide Risso; Lieven Clement
errShare
errSave
Harnessing the potential of spatial statistics for spatial omics data with pasta
err2025-09-23
err0
errOAAI
errEmons, Martin; Gunz, Samuel; Crowell, Helena L.; Mallona, Izaskun; Kuehl, Malte; Furrer, Reinhard; Robinson, Mark D.
errShare
errSave
STAMP: Single-cell transcriptomics analysis and multimodal profiling through imaging
errCell
IF42.5
err2025-06-17
err0
errOAAI
errEmanuele Pitino; Anna Pascual-Reguant; Felipe Segato-Dezem; Kellie Wise; Irepan Salvador-Martinez; Helena Lucia Crowell; Maycon Marção; Max Ruiz; Elise Courtois; William F. Flynn; Santhosh Sivajothi; Emily Soja; Ginevra Caratù; German Atzin Mora-Roldan; B. Kate Dredge; Yutian Liu; Hannah Chasteen; Monika Mohenska; Juan C. Nieto; Raymond K.H. Yip; Ruvimbo D. Mishi; José M. Polo; Mohmed Abdalfttah; Adrienne E. Sullivan; Jasmine T. Plummer; Holger Heyn; Luciano G. Martelotto
errShare
errSave
The shaky foundations of simulating single-cell RNA sequencing data (vol 24, 62, 2023)
err2024-07-05
err0
errOAAI
errCrowell, Helena L.; Leonardo, Sarah X. Morillo; Soneson, Charlotte; Robinson, Mark D.
errShare
errSave
The tidyomics ecosystem: enhancing omic data analyses
err2024-06-14
err2
PREAI
errHutchison, William J.; Keyes, Timothy J.; Crowell, Helena L.; Serizay, Jacques; Soneson, Charlotte; Davis, Eric S.; Sato, Noriaki; Moses, Lambda; Tarlinton, Boyd; Nahid, Abdullah A.; Kosmac, Miha; Clayssen, Quentin; Yuan, Victor; Mu, Wancen; Park, Ji-Eun; Mamede, Izabela; Ryu, Min Hyung; Axisa, Pierre-Paul; Paiz, Paulina; Poon, Chi-Lam; Tang, Ming; Gottardo, Raphael; Morgan, Martin; Lee, Stuart; Lawrence, Michael; Hicks, Stephanie C.; Nolan, Garry P.; Davis, Kara L.; Papenfuss, Anthony T.; Love, Michael I.; Mangiola, Stefano
errShare
errSave
Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease (vol 14, 4506, 2023)
err2024-01-29
err0
errOAAI
errGarrido-Trigo, Alba; Corraliza, Ana M.; Veny, Marisol; Dotti, Isabella; Melon-Ardanaz, Elisa; Rill, Aina; Crowell, Helena L.; Corbi, Angel; Gudino, Victoria; Esteller, Miriam; Alvarez-Teubel, Iris; Aguilar, Daniel; Masamunt, M. Carme; Killingbeck, Emily; Kim, Youngmi; Leon, Michael; Visvanathan, Sudha; Marchese, Domenica; Caratu, Ginevra; Martin-Cardona, Albert; Esteve, Maria; Ordas, Ingrid; Panes, Julian; Ricart, Elena; Mereu, Elisabetta; Heyn, Holger; Salas, Azucena
errShare
errSave
Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease
err2023-07-26
err31
errOAAI
errGarrido-Trigo, Alba; Corraliza, Ana M.; Veny, Marisol; Dotti, Isabella; Melon-Ardanaz, Elisa; Rill, Aina; Crowell, Helena L.; Corbi, Angel; Gudino, Victoria; Esteller, Miriam; alvarez-Teubel, Iris; Aguilar, Daniel; Masamunt, M. Carme; Killingbeck, Emily; Kim, Youngmi; Leon, Michael; Visvanathan, Sudha; Marchese, Domenica; Caratu, Ginevra; Martin-Cardona, Albert; Esteve, Maria; Panes, Julian; Ricart, Elena; Mereu, Elisabetta; Heyn, Holger; Salas, Azucena
errShare
errSave
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability
err2023-05-17
err4
errOAAI
errSonrel, Anthony; Luetge, Almut; Soneson, Charlotte; Mallona, Izaskun; Germain, Pierre-Luc; Knyazev, Sergey; Gilis, Jeroen; Gerber, Reto; Seurinck, Ruth; Paul, Dominique; Sonder, Emanuel; Crowell, Helena L. L.; Fanaswala, Imran; Al-Ajami, Ahmad; Heidari, Elyas; Schmeing, Stephan; Milosavljevic, Stefan; Saeys, Yvan; Mangul, Serghei; Robinson, Mark D.
errShare
errSave
The shaky foundations of simulating single-cell RNA sequencing data
err2023-03-29
err12
errOAAI
errCrowell, Helena L.; Leonardo, Sarah X. Morillo X.; Soneson, Charlotte; Robinson, Mark D.
errShare
errSave
Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma
err2022-03-30
err17
errOAAI
errPrummel, Karin D.; Crowell, Helena L.; Nieuwenhuize, Susan; Brombacher, Eline C.; Daetwyler, Stephan; Soneson, Charlotte; Kresoja-Rakic, Jelena; Ronner, Manuel; Kocere, Agnese; Ernst, Alexander; Labbaf, Zahra; Clouthier, David E.; Firulli, Anthony B.; Sanchez-Iranzo, Hector; Naganathan, Sundar R.; O'Rourke, Rebecca; Raz, Erez; Mercader, Nadia; Burger, Alexa; Felley-Bosco, Emanuela; Huisken, Jan; Robinson, Mark D.; Mosimann, Christian
errShare
errSave
Selenium-Binding Protein 1 (SELENBP1) as Biomarker for Adverse Clinical Outcome After Traumatic Spinal Cord Injury
err2021-05-28
err5
errOAAI
errSeelig, Julian; Heller, Raban Arved; Haubruck, Patrick; Sun, Qian; Klingenberg, Georg Jochen; Hackler, Julian; Crowell, Helena Lucia; Daniel, Volker; Moghaddam, Arash; Schomburg, Lutz; Biglari, Bahram
errShare
errSave
Predicting neurological recovery after traumatic spinal cord injury by time-resolved analysis of monocyte subsets
errBRAIN
IF11.7
err2021-05-22
err11
errOAAI
errHeller, Raban Arved; Seelig, Julian; Crowell, Helena Lucia; Pilz, Maximilian; Haubruck, Patrick; Sun, Qian; Schomburg, Lutz; Daniel, Volker; Moghaddam, Arash; Biglari, Bahram
errShare
errSave
CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data
err2021-03-23
err23
errOAAI
errLuetge, Almut; Zyprych-Walczak, Joanna; Kunzmann, Urszula Brykczynska; Crowell, Helena L.; Calini, Daniela; Malhotra, Dheeraj; Soneson, Charlotte; Robinson, Mark D.
errShare
errSave
muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
err2020-11-30
err193
errOAAI
errCrowell, Helena L.; Soneson, Charlotte; Germain, Pierre-Luc; Calini, Daniela; Collin, Ludovic; Raposo, Catarina; Malhotra, Dheeraj; Robinson, Mark D.
errShare
errSave
Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry
err2018-05-01
err250
errOAAI
errChevrier, Stephane; Crowell, Helena L.; Zanotelli, Vito R. T.; Engler, Stefanie; Robinson, Mark D.; Bodenmiller, Bernd
errShare
errSave