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Wim Vranken

universite libre de bruxelles

47H-index
236Paper Count
1.4WCitation Count
Published Papers 70
Publication Date
Assessing the relation between protein phosphorylation, AlphaFold3 models, and conformational variability
err2025-12-23
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errRamasamy, Pathmanaban; Zuallaert, Jasper; Martens, Lennart; Vranken, Wim F.
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Unlocking Health Data for Research: Legal, Technical, and Organisational Lessons from a Belgian Interdisciplinary Case Study
err2025-10-23
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errAudrey Van Scharen; Karen Cruyt; Jeroen Colon; Selene De Sutter; Johnny Duerinck; Ramses Forsyth; Catharina Olsen; Paul Quinn; Konstantina Tzavella; Sonia Van Dooren; Wim Waelput; Arne Witdouck; Pieter Cornu; Jef Vandemeulebroucke; Wim Vranken
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Cryo-EM structures of the MnmE–MnmG complex reveal large conformational changes and provide new insights into the mechanism of tRNA modification
err2025-08-30
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errLaila Maes; Israel Mares-Mejía; Ella Martin; David Bickel; Siemen Claeys; Wim Vranken; Marcus Fislage; Christian Galicia; Wim Versées
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Deciphering the RNA recognition by Musashi-1 to design protein and RNA variants for in vitro and in vivo applications
err2025-08-28
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errPerez-Rafols, Anna; Perez-Ropero, Guillermo; Cerofolini, Linda; Sperotto, Luca; Roca-Martinez, Joel; Higuera-Rodriguez, R. Anahi; Russomanno, Pasquale; Kaiser, Wolfgang; Vranken, Wim; Danielson, U. Helena; Provenzani, Alessandro; Martelli, Tommaso; Sattler, Michael; Buijs, Jos; Fragai, Marco
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In silico identification of archaeal DNA-binding proteins
err2025-05-02
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errDonvil, Linus; Housmans, Joelle A. J.; Peeters, Eveline; Vranken, Wim; Orlando, Gabriele
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Critical assessment of missense variant effect predictors on disease-relevant variant data
err2025-03-01
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errRastogi, Ruchir; Chung, Ryan; Li, Sindy; Li, Chang; Lee, Kyoungyeul; Woo, Junwoo; Kim, Dong-Wook; Keum, Changwon; Babbi, Giulia; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Chennen, Kirsley; Weber, Thomas; Poch, Olivier; Ancien, Francois; Cia, Gabriel; Pucci, Fabrizio; Raimondi, Daniele; Vranken, Wim; Rooman, Marianne; Marquet, Celine; Olenyi, Tobias; Rost, Burkhard; Andreoletti, Gaia; Kamandula, Akash; Peng, Yisu; Bakolitsa, Constantina; Mort, Matthew; Cooper, David N.; Bergquist, Timothy; Pejaver, Vikas; Liu, Xiaoming; Radivojac, Predrag; Brenner, Steven E.; Ioannidis, Nilah M.
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Data-driven probabilistic definition of the low energy conformational states of protein residues
err2024-07-09
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errGavalda-Garcia, Jose; Bickel, David; Roca-Martinez, Joel; Raimondi, Daniele; Orlando, Gabriele; Vranken, Wim
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Repurposing the mammalian RNA-binding protein Musashi-1 as an allosteric translation repressor in bacteria
err2024-02-16
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errDolcemascolo, Roswitha; Heras-Hernandez, Maria; Goiriz, Lucas; Montagud-Martinez, Roser; Requena-Menendez, Alejandro; Ruiz, Raul; Perez-Rafols, Anna; Higuera-Rodriguez, R. Anahi; Perez-Ropero, Guillermo; Vranken, Wim F.; Martelli, Tommaso; Kaiser, Wolfgang; Buijs, Jos; Rodrigo, Guillermo
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Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions
err2023-07-03
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errMeszaros, Balint; Hatos, Andras; Palopoli, Nicolas; Quaglia, Federica; Salladini, Edoardo; Van Roey, Kim; Arthanari, Haribabu; Dosztanyi, Zsuzsanna; Felli, Isabella C.; Fischer, Patrick D.; Hoch, Jeffrey C.; Jeffries, Cy M.; Longhi, Sonia; Maiani, Emiliano; Orchard, Sandra; Pancsa, Rita; Papaleo, Elena; Pierattelli, Roberta; Piovesan, Damiano; Pritisanac, Iva; Tenorio, Luiggi; Viennet, Thibault; Tompa, Peter; Vranken, Wim; Tosatto, Silvio C. E.; Davey, Norman E.
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Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit (vol 12, 6414, 2021
err2023-02-24
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errBoone, Morgane; Ramasamy, Pathmanaban; Zuallaert, Jasper; Bouwmeester, Robbin; Van Moer, Berre; Maddelein, Davy; Turan, Demet; Hulstaert, Niels; Eeckhaut, Hannah; Vandermarliere, Elien; Martens, Lennart; Degroeve, Sven; De Neve, Wesley; Vranken, Wim; Callewaert, Nico
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Deep mutational scanning of essential bacterial proteins can guide antibiotic development (vol 14, 241, 2023)
err2023-02-06
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errDewachter, Liselot; Brooks, Aaron N.; Noon, Katherine; Cialek, Charlotte; Clark-ElSayed, Alia; Schalck, Thomas; Krishnamurthy, Nandini; Versees, Wim; Vranken, Wim; Michiels, Jan
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New simulation insights on the structural transition mechanism of bovine rhodopsin activation
err2023-01-24
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errDamodaran, Kamalesh; Khan, Taushif; Bickel, David; Jaya, Sreeshma; Vranken, Wim F.; Sudandiradoss, Chinnappan
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Deep mutational scanning of essential bacterial proteins can guide antibiotic development
err2023-01-16
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errDewachter, Liselot; Brooks, Aaron N. N.; Noon, Katherine; Cialek, Charlotte; Clark-ElSayed, Alia; Schalck, Thomas; Krishnamurthy, Nandini; Versees, Wim; Vranken, Wim; Michiels, Jan
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Evolutionary adaptation of the protein folding pathway for secretability
err2022-08-29
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errSmets, Dries; Tsirigotaki, Alexandra; Smit, Jochem H.; Krishnamurthy, Srinath; Portaliou, Athina G.; Vorobieva, Anastassia; Vranken, Wim; Karamanou, Spyridoula; Economou, Anastassios
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Challenges in describing the conformation and dynamics of proteins with ambiguous behavior
err2022-08-03
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errRoca-Martinez, Joel; Lazar, Tamas; Gavalda-Garcia, Jose; Bickel, David; Pancsa, Rita; Dixit, Bhawna; Tzavella, Konstantina; Ramasamy, Pathmanaban; Sanchez-Fornaris, Maite; Grau, Isel; Vranken, Wim F. F.
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