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Unlocking capacities of genomics for the COVID-19 response and future pandemics Knyazev, Sergey; Chhugani, Karishma; Sarwal, Varuni; Ayyala, Ram; Singh, Harman; Karthikeyan, Smruthi; Deshpande, Dhrithi; Baykal, Pelin Icer; Comarova, Zoia; Lu, Angela; Porozov, Yuri; Vasylyeva, Tetyana, I; Wertheim, Joel O.; Tierney, Braden T.; Chiu, Charles Y.; Sun, Ren; Wu, Aiping; Abedalthagafi, Malak S.; Pak, Victoria M.; Nagaraj, Shivashankar H.; Smith, Adam L.; Skums, Pavel; Pasaniuc, Bogdan; Komissarov, Andrey; Mason, Christopher E.; Bortz, Eric; Lemey, Philippe; Kondrashov, Fyodor; Beerenwinkel, Niko; Lam, Tommy Tsan-Yuk; Wu, Nicholas C.; Zelikovsky, Alex; Knight, Rob; Crandall, Keith A.; Mangul, Serghei Share Save
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Technology dictates algorithms: recent developments in read alignment Alser, Mohammed; Rotman, Jeremy; Deshpande, Dhrithi; Taraszka, Kodi; Shi, Huwenbo; Baykal, Pelin Icer; Yang, Harry Taegyun; Xue, Victor; Knyazev, Sergey; Singer, Benjamin D.; Balliu, Brunilda; Koslicki, David; Skums, Pavel; Zelikovsky, Alex; Alkan, Can; Mutlu, Onur; Mangul, Serghei Share Save
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction Knyazev, Sergey; Tsyvina, Viachaslau; Shankar, Anupama; Melnyk, Andrew; Artyomenko, Alexander; Malygina, Tatiana; Porozov, Yuri B.; Campbell, Ellsworth M.; Switzer, William M.; Skums, Pavel; Mangul, Serghei; Zelikovsky, Alex Share Save
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Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing (vol 11, 3126, 2020) Mandric, Igor; Rotman, Jeremy; Yang, Harry Taegyun; Strauli, Nicolas; Montoya, Dennis J.; Van der Wey, William; Ronas, Jiem R.; Statz, Benjamin; Yao, Douglas; Petrova, Velislava; Zelikovsky, Alex; Spreafico, Roberto; Shifman, Sagiv; Zaitlen, Noah; Rossetti, Maura; Ansel, K. Mark; Eskin, Eleazar; Mangul, Serghei Share Save
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Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing Mandric, Igor; Rotman, Jeremy; Yang, Harry Taegyun; Strauli, Nicolas; Montoya, Dennis J.; Van Der Wey, William; Ronas, Jiem R.; Statz, Benjamin; Yao, Douglas; Petrova, Velislava; Zelikovsky, Alex; Spreafico, Roberto; Shifman, Sagiv; Zaitlen, Noah; Rossetti, Maura; Ansel, K. Mark; Eskin, Eleazar; Mangul, Serghei Share Save
Benchmarking of computational error-correction methods for next-generation sequencing data Mitchell, Keith; Brito, Jaqueline J.; Mandric, Igor; Wu, Qiaozhen; Knyazev, Sergey; Chang, Sei; Martin, Lana S.; Karlsberg, Aaron; Gerasimov, Ekaterina; Littman, Russell; Hill, Brian L.; Wu, Nicholas C.; Yang, Harry Taegyun; Hsieh, Kevin; Chen, Linus; Littman, Eli; Shabani, Taylor; Enik, German; Yao, Douglas; Sun, Ren; Schroeder, Jan; Eskin, Eleazar; Zelikovsky, Alex; Skums, Pavel; Pop, Mihai; Mangul, Serghei Share Save
Eleven grand challenges in single-cell data science Laehnemann, David; Koester, Johannes; Szczurek, Ewa; McCarthy, Davis J.; Hicks, Stephanie C.; Robinson, Mark D.; Vallejos, Catalina A.; Campbell, Kieran R.; Beerenwinkel, Niko; Mahfouz, Ahmed; Pinello, Luca; Skums, Pavel; Stamatakis, Alexandros; Attolini, Camille Stephan-Otto; Aparicio, Samuel; Baaijens, Jasmijn; Balvert, Marleen; de Barbanson, Buys; Cappuccio, Antonio; Corleone, Giacomo; Dutilh, Bas E.; Florescu, Maria; Guryev, Victor; Holmer, Rens; Jahn, Katharina; Lobo, Thamar Jessurun; Keizer, Emma M.; Khatri, Indu; Kielbasa, Szymon M.; Korbel, Jan O.; Kozlov, Alexey M.; Kuo, Tzu-Hao; Lelieveldt, Boudewijn P. F.; Mandoiu, Ion I.; Marioni, John C.; Marschall, Tobias; Moelder, Felix; Niknejad, Amir; Raczkowski, Lukasz; Reinders, Marcel; de Ridder, Jeroen; Saliba, Antoine-Emmanuel; Somarakis, Antonios; Stegle, Oliver; Theis, Fabian J.; Yang, Huan; Zelikovsky, Alex; McHardy, Alice C.; Raphael, Benjamin J.; Shah, Sohrab P.; Schonhuth, Alexander Share Save
Telescope: an interactive tool for managing large-scale analysis from mobile devices Brito, Jaqueline J.; Mosqueiro, Thiago; Rotman, Jeremy; Xue, Victor; Chapski, Douglas J.; De la Hoz, Juan; Matias, Paulo; Martin, Lana S.; Zelikovsky, Alex; Pellegrini, Matteo; Mangul, Serghei Share Save
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