Not logged in SquiDBase: a community resource of raw nanopore data from microbes Cuypers, Wim L.; Ceylan, Halil; Turcksin, Eline; Raes, Laura; de vrij, Nicky; Michiels, Johan; Coppens, Sandra; de Block, Tessa; Jansen, Daan; Arien, Kevin K.; Selhorst, Philippe; Vercauteren, Koen; Gauglitz, Julia M.; Bittremieux, Wout; Laukens, Kris Share Save
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Human Milk Bioactive Components and Child Growth and Body Composition in the First 2 Years: A Systematic Review Brockway, Meredith (Merilee); Daniel, Allison I.; Reyes, Sarah M.; Gauglitz, Julia M.; Granger, Matthew; Mcdermid, Joann M.; Chan, Deborah; Refvik, Rebecca; Sidhu, Karanbir K.; Musse, Suad; Patel, Pooja P.; Monnin, Caroline; Lotoski, Larisa; Geddes, Donna T.; Jehan, Fyezah; Kolsteren, Patrick; Bode, Lars; Eriksen, Kamilla G.; Allen, Lindsay H.; Hampel, Daniela; Rodriguez, Natalie; Azad, Meghan B. Share Save
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics Bittremieux, Wout; Avalon, Nicole E.; Thomas, Sydney P.; Kakhkhorov, Sarvar A.; Aksenov, Alexander A.; Gomes, Paulo Wender P.; Aceves, Christine M.; Caraballo-Rodriguez, Andres Mauricio; Gauglitz, Julia M.; Gerwick, William H.; Huan, Tao; Jarmusch, Alan K.; Kaddurah-Daouk, Rima F.; Kang, Kyo Bin; Kim, Hyun Woo; Kondic, Todor; Mannochio-Russo, Helena; Meehan, Michael J.; Melnik, Alexey V.; Nothias, Louis-Felix; O'Donovan, Claire; Panitchpakdi, Morgan; Petras, Daniel; Schmid, Robin; Schymanski, Emma L.; van der Hooft, Justin J. J.; Weldon, Kelly C.; Yang, Heejung; Xing, Shipei; Zemlin, Jasmine; Wang, Mingxun; Dorrestein, Pieter C. Share Save
Enhancing untargeted metabolomics using metadata-based source annotation Gauglitz, Julia M.; West, Kiana A.; Bittremieux, Wout; Williams, Candace L.; Weldon, Kelly C.; Panitchpakdi, Morgan; Di Ottavio, Francesca; Aceves, Christine M.; Brown, Elizabeth; Sikora, Nicole C.; Jarmusch, Alan K.; Martino, Cameron; Tripathi, Anupriya; Meehan, Michael J.; Dorrestein, Kathleen; Shaffer, Justin P.; Coras, Roxana; Vargas, Fernando; Goldasich, Lindsay DeRight; Schwartz, Tara; Bryant, MacKenzie; Humphrey, Gregory; Johnson, Abigail J.; Spengler, Katharina; Belda-Ferre, Pedro; Diaz, Edgar; McDonald, Daniel; Zhu, Qiyun; Elijah, Emmanuel O.; Wang, Mingxun; Marotz, Clarisse; Sprecher, Kate E.; Vargas-Robles, Daniela; Withrow, Dana; Ackermann, Gail; Herrera, Lourdes; Bradford, Barry J.; Marques, Lucas Maciel Mauriz; Amaral, Juliano Geraldo; Silva, Rodrigo Moreira; Veras, Flavio Protasio; Cunha, Thiago Mattar; Oliveira, Rene Donizeti Ribeiro; Louzada-Junior, Paulo; Mills, Robert H.; Piotrowski, Paulina K.; Servetas, Stephanie L.; Da Silva, Sandra M.; Jones, Christina M.; Lin, Nancy J.; Lippa, Katrice A.; Jackson, Scott A.; Daouk, Rima Kaddurah; Galasko, Douglas; Dulai, Parambir S.; Kalashnikova, Tatyana I.; Wittenberg, Curt; Terkeltaub, Robert; Doty, Megan M.; Kim, Jae H.; Rhee, Kyung E.; Beauchamp-Walters, Julia; Wright, Jr Kenneth P.; Dominguez-Bello, Maria Gloria; Manary, Mark; Oliveira, Michelli F.; Boland, Brigid S.; Lopes, Norberto Peporine; Guma, Monica; Swafford, Austin D.; Dutton, Rachel J.; Knight, Rob; Dorrestein, Pieter C. Share Save
Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry Dantas Machado, Ana Carolina; Ramos, Stephany Flores; Gauglitz, Julia M.; Fassler, Anne-Marie; Petras, Daniel; Aksenov, Alexander A.; Kim, Un Bi; Lazarowicz, Michael; Barnard Giustini, Abbey; Aryafar, Hamed; Vodkin, Irine; Warren, Curtis; Dorrestein, Pieter C.; Zarrinpar, Ali; Zarrinpar, Amir Share Save
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Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis Coras, Roxana; Martino, Cameron; Gauglitz, Julia M.; Cedola, Francesca; Tripathi, Anupriya; Jarmusch, Alan K.; Alharthi, Maram; Fernandez-Bustamante, Marta; Agustin-Perez, Meritxell; Singh, Abha; Choi, Soo-In; Rivera, Tania; Nguyen, Katherine; Shekhtman, Tatyana; Holt, Tiffany; Lee, Susan; Golshan, Shahrokh; Dorrestein, Pieter C.; Knight, Rob; Guma, Monica Share Save
Enhancing untargeted metabolomics using metadata-based source annotation Gauglitz, Julia M.; West, Kiana A.; Bittremieux, Wout; Williams, Candace L.; Weldon, Kelly C.; Panitchpakdi, Morgan; Di Ottavio, Francesca; Aceves, Christine M.; Brown, Elizabeth; Sikora, Nicole C.; Jarmusch, Alan K.; Martino, Cameron; Tripathi, Anupriya; Meehan, Michael J.; Dorrestein, Kathleen; Shaffer, Justin P.; Coras, Roxana; Vargas, Fernando; Goldasich, Lindsay DeRight; Schwartz, Tara; Bryant, MacKenzie; Humphrey, Gregory; Johnson, Abigail J.; Spengler, Katharina; Belda-Ferre, Pedro; Diaz, Edgar; McDonald, Daniel; Zhu, Qiyun; Elijah, Emmanuel O.; Wang, Mingxun; Marotz, Clarisse; Sprecher, Kate E.; Vargas-Robles, Daniela; Withrow, Dana; Ackermann, Gail; Herrera, Lourdes; Bradford, Barry J.; Marques, Lucas Maciel Mauriz; Amaral, Juliano Geraldo; Silva, Rodrigo Moreira; Veras, Flavio Protasio; Cunha, Thiago Mattar; Oliveira, Rene Donizeti Ribeiro; Louzada-Junior, Paulo; Mills, Robert H.; Piotrowski, Paulina K.; Servetas, Stephanie L.; Da Silva, Sandra M.; Jones, Christina M.; Lin, Nancy J.; Lippa, Katrice A.; Jackson, Scott A.; Daouk, Rima Kaddurah; Galasko, Douglas; Dulai, Parambir S.; Kalashnikova, Tatyana I.; Wittenberg, Curt; Terkeltaub, Robert; Doty, Megan M.; Kim, Jae H.; Rhee, Kyung E.; Beauchamp-Walters, Julia; Wright, Kenneth P., Jr.; Dominguez-Bello, Maria Gloria; Manary, Mark; Oliveira, Michelli F.; Boland, Brigid S.; Lopes, Norberto Peporine; Guma, Monica; Swafford, Austin D.; Dutton, Rachel J.; Knight, Rob; Dorrestein, Pieter C. Share Save
Perspective: A Framework for Addressing Dynamic Food Consumption Processes Taylor, Jennifer C.; Allman-Farinelli, Margaret; Chen, Juliana; Gauglitz, Julia M.; Hamideh, Dina; Jankowska, Marta M.; Johnson, Abigail J.; Rangan, Anna; Spruijt-Metz, Donna; Yang, Jiue-An; Hekler, Eric Share Save
The molecular impact of life in an indoor environment Aksenov, Alexander A.; Salido, Rodolfo A.; Melnik, Alexey, V; Brennan, Caitriona; Brejnrod, Asker; Caraballo-Rodriguez, Andres Mauricio; Gauglitz, Julia M.; Lejzerowicz, Franck; Farmer, Delphine K.; Vance, Marina E.; Knight, Rob; Dorrestein, Pieter C. Share Save
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention Orchanian, Stephanie B.; Gauglitz, Julia M.; Wandro, Stephen; Weldon, Kelly C.; Doty, Megan; Stillwell, Kristina; Hansen, Shalisa; Jiang, Lingjing; Vargas, Fernando; Rhee, Kyung E.; Lumeng, Julie C.; Dorrestein, Pieter C.; Knight, Rob; Kim, Jae H.; Song, Se Jin; Swafford, Austin D. Share Save
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The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients Gonzalez, Carlos G.; Mills, Robert H.; Kordahi, Melissa C.; Carrillo-Terrazas, Marvic; Secaira-Morocho, Henry; Widjaja, Christella E.; Tsai, Matthew S.; Mittal, Yash; Yee, Brian A.; Vargas, Fernando; Weldon, Kelly; Gauglitz, Julia M.; Delaroque, Clara; Sauceda, Consuelo; Rossitto, Leigh-Ana; Ackermann, Gail; Humphrey, Gregory; Swafford, Austin D.; Siegel, Corey A.; Buckey, Jay C., Jr.; Raffals, Laura E.; Sadler, Charlotte; Lindholm, Peter; Fisch, Kathleen M.; Valaseck, Mark; Suriawinata, Arief; Yeo, Gene W.; Ghosh, Pradipta; Chang, John T.; Chu, Hiutung; Dorrestein, Pieter; Zhu, Qiyun; Chassaing, Benoit; Knight, Rob; Gonzalez, David J.; Dulai, Parambir S. Share Save
Chemical Proportionality within Molecular Networks Petras, Daniel; Caraballo-Rodriguez, Andres Mauricio; Jarmusch, Alan K.; Molina-Santiago, Carlos; Gauglitz, Julia M.; Gentry, Emily C.; Belda-Ferre, Pedro; Romero, Diego; Tsunoda, Shirley M.; Dorrestein, Pieter C.; Wang, Mingxun Share Save
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment Schmid, Robin; Petras, Daniel; Nothias, Louis-Felix; Wang, Mingxun; Aron, Allegra T.; Jagels, Annika; Tsugawa, Hiroshi; Rainer, Johannes; Garcia-Aloy, Mar; Duhrkop, Kai; Korf, Ansgar; Pluskal, Tomas; Kamenik, Zdenek; Jarmusch, Alan K.; Caraballo-Rodriguez, Andres Mauricio; Weldon, Kelly C.; Nothias-Esposito, Melissa; Aksenov, Alexander A.; Bauermeister, Anelize; Orio, Andrea Albarracin; Grundmann, Carlismari O.; Vargas, Fernando; Koester, Irina; Gauglitz, Julia M.; Gentry, Emily C.; Hovelmann, Yannick; Kalinina, Svetlana A.; Pendergraft, Matthew A.; Panitchpakdi, Morgan; Tehan, Richard; Le Gouellec, Audrey; Aleti, Gajender; Russo, Helena Mannochio; Arndt, Birgit; Hubner, Florian; Hayen, Heiko; Zhi, Hui; Raffatellu, Manuela; Prather, Kimberly A.; Aluwihare, Lihini, I; Bocker, Sebastian; McPhail, Kerry L.; Humpf, Hans-Ulrich; Karst, Uwe; Dorrestein, Pieter C. Share Save
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets Cantrell, Kalen; Fedarko, Marcus W.; Rahman, Gibraan; McDonald, Daniel; Yang, Yimeng; Zaw, Thant; Gonzalez, Antonio; Janssen, Stefan; Estaki, Mehrbod; Haiminen, Niina; Beck, Kristen L.; Zhu, Qiyun; Sayyari, Erfan; Morton, James T.; Armstrong, George; Tripathi, Anupriya; Gauglitz, Julia M.; Marotz, Clarisse; Matteson, Nathaniel L.; Martino, Cameron; Sanders, Jon G.; Carrieri, Anna Paola; Song, Se Jin; Swafford, Austin D.; Dorrestein, Pieter C.; Andersen, Kristian G.; Parida, Laxmi; Kim, Ho-Cheol; Vazquez-Baeza, Yoshiki; Knight, Rob Share Save
A community resource for paired genomic and metabolomic data mining Schorn, Michelle A.; Verhoeven, Stefan; Ridder, Lars; Huber, Florian; Acharya, Deepa D.; Aksenov, Alexander A.; Aleti, Gajender; Moghaddam, Jamshid Amiri; Aron, Allegra T.; Aziz, Saefuddin; Bauermeister, Anelize; Bauman, Katherine D.; Baunach, Martin; Beemelmanns, Christine; Beman, J. Michael; Berlanga-Clavero, Maria Victoria; Blacutt, Alex A.; Bode, Helge B.; Boullie, Anne; Brejnrod, Asker; Bugni, Tim S.; Calteau, Alexandra; Cao, Liu; Carrion, Victor J.; Castelo-Branco, Raquel; Chanana, Shaurya; Chase, Alexander B.; Chevrette, Marc G.; Costa-Lotufo, Leticia V.; Crawford, Jason M.; Currie, Cameron R.; Cuypers, Bart; Dang, Tam; de Rond, Tristan; Demko, Alyssa M.; Dittmann, Elke; Du, Chao; Drozd, Christopher; Dujardin, Jean-Claude; Dutton, Rachel J.; Edlund, Anna; Fewer, David P.; Garg, Neha; Gauglitz, Julia M.; Gentry, Emily C.; Gerwick, Lena; Glukhov, Evgenia; Gross, Harald; Gugger, Muriel; Guillen Matus, Dulce G.; Helfrich, Eric J. N.; Hempel, Benjamin-Florian; Hur, Jae-Seoun; Iorio, Marianna; Jensen, Paul R.; Kang, Kyo Bin; Kaysser, Leonard; Kelleher, Neil L.; Kim, Chung Sub; Kim, Ki Hyun; Koester, Irina; Koenig, Gabriele M.; Leao, Tiago; Lee, Seoung Rak; Lee, Yi-Yuan; Li, Xuanji; Little, Jessica C.; Maloney, Katherine N.; Maennle, Daniel; Martin H., Christian; McAvoy, Andrew C.; Metcalf, Willam W.; Mohimani, Hosein; Molina-Santiago, Carlos; Moore, Bradley S.; Mullowney, Michael W.; Muskat, Mitchell; Nothias, Louis-Felix; O'Neill, Ellis C.; Parkinson, Elizabeth I.; Petras, Daniel; Piel, Jorn; Pierce, Emily C.; Pires, Karine; Reher, Raphael; Romero, Diego; Roper, M. Caroline; Rust, Michael; Saad, Hamada; Saenz, Carmen; Sanchez, Laura M.; Sorensen, Soren Johannes; Sosio, Margherita; Sussmuth, Roderich D.; Sweeney, Douglas; Tahlan, Kapil; Thomson, Regan J.; Tobias, Nicholas J.; Trindade-Silva, Amaro E.; van Wezel, Gilles P.; Wang, Mingxun; Weldon, Kelly C.; Zhang, Fan; Ziemert, Nadine; Duncan, Katherine R.; Cruesemann, Max; Rogers, Simon; Dorrestein, Pieter C.; Medema, Marnix H.; van der Hooft, Justin J. J. Share Save
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