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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification Pardo-Palacios, Francisco J.; Wang, Dingjie; Reese, Fairlie; Diekhans, Mark; Carbonell-Sala, Silvia; Williams, Brian; Loveland, Jane E.; De Maria, Maite; Adams, Matthew S.; Balderrama-Gutierrez, Gabriela; Behera, Amit K.; Gonzalez Martinez, Jose M.; Hunt, Toby; Lagarde, Julien; Liang, Cindy E.; Li, Haoran; Meade, Marcus Jerryd; Moraga Amador, David A.; Prjibelski, Andrey D.; Birol, Inanc; Bostan, Hamed; Brooks, Ashley M.; Celik, Muhammed Hasan; Chen, Ying; Du, Mei R. M.; Felton, Colette; Goeke, Jonathan; Hafezqorani, Saber; Herwig, Ralf; Kawaji, Hideya; Lee, Joseph; Li, Jian-Liang; Lienhard, Matthias; Mikheenko, Alla; Mulligan, Dennis; Nip, Ka Ming; Pertea, Mihaela; Ritchie, Matthew E.; Sim, Andre D.; Tang, Alison D.; Wan, Yuk Kei; Wang, Changqing; Wong, Brandon Y.; Yang, Chen; Barnes, If; Berry, Andrew E.; Capella-Gutierrez, Salvador; Cousineau, Alyssa; Dhillon, Namrita; Fernandez-Gonzalez, Jose M.; Ferrandez-Peral, Luis; Garcia-Reyero, Natalia; Goetz, Stefan; Hernandez-Ferrer, Carles; Kondratova, Liudmyla; Liu, Tianyuan; Martinez-Martin, Alessandra; Menor, Carlos; Mestre-Tomas, Jorge; Mudge, Jonathan M.; Panayotova, Nedka G.; Paniagua, Alejandro; Repchevsky, Dmitry; Ren, Xingjie; Rouchka, Eric; Saint-John, Brandon; Sapena, Enrique; Sheynkman, Leon; Smith, Melissa Laird; Suner, Marie-Marthe; Takahashi, Hazuki; Youngworth, Ingrid A.; Carninci, Piero; Denslow, Nancy D.; Guigo, Roderic; Hunter, Margaret E.; Maehr, Rene; Shen, Yin; Tilgner, Hagen U.; Wold, Barbara J.; Vollmers, Christopher; Frankish, Adam; Au, Kin Fai; Sheynkman, Gloria M.; Mortazavi, Ali; Conesa, Ana; Brooks, Angela N. Share Save
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Temozolomide-induced guanine mutations create exploitable vulnerabilities of guanine-rich DNA and RNA regions in drug-resistant gliomas Tiek, Deanna M.; Erdogdu, Beril; Razaghi, Roham; Jin, Lu; Sadowski, Norah; Alamillo-Ferrer, Carla; Hogg, J. Robert; Haddad, Bassem R.; Drewry, David H.; Wells, Carrow, I; Pickett, Julie E.; Song, Xiao; Goenka, Anshika; Hu, Bo; Goldlust, Samuel A.; Zuercher, William J.; Pertea, Mihaela; Timp, Winston; Cheng, Shi-Yuan; Riggins, Rebecca B. Share Save
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Assembly and annotation of an Ashkenazi human reference genome Shumate, Alaina; Zimin, Aleksey, V; Sherman, Rachel M.; Puiu, Daniela; Wagner, Justin M.; Olson, Nathan D.; Pertea, Mihaela; Salit, Marc L.; Zook, Justin M.; Salzberg, Steven L. Share Save
Single-cell transcriptional landscapes reveal HIV-1-driven aberrant host gene transcription as a potential therapeutic target Liu, Runxia; Yeh, Yang-Hui Jimmy; Varabyou, Ales; Collora, Jack A.; Sherrill-Mix, Scott; Talbot, C. Conover, Jr.; Mehta, Sameet; Albrecht, Kristen; Hao, Haiping; Zhang, Hao; Pollack, Ross A.; Beg, Subul A.; Calvi, Rachela M.; Hu, Jianfei; Durand, Christine M.; Ambinder, Richard F.; Hoh, Rebecca; Deeks, Steven G.; Chiarella, Jennifer; Spudich, Serena; Douek, Daniel C.; Bushman, Frederic D.; Pertea, Mihaela; Ho, Ya-Chi Share Save
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