Not logged in AutoXAI4Omics: an automated explainable AI tool for omics and tabular data Strudwick, James; Gardiner, Laura-Jayne; Denning-James, Kate; Haiminen, Niina; Evans, Ashley; Kelly, Jennifer; Madgwick, Matthew; Utro, Filippo; Seabolt, Ed; Gibson, Christopher; Bedi, Bharat; Clayton, Daniel; Howell, Ciaron; Parida, Laxmi; Carrieri, Anna Paola Share Save
Development and evaluation of statistical and artificial intelligence approaches with microbial shotgun metagenomics data as an untargeted screening tool for use in food production Beck, Kristen L.; Haiminen, Niina; Agarwal, Akshay; Carrieri, Anna Paola; Madgwick, Matthew; Kelly, Jennifer; Pylro, Victor; Kawas, Ban; Wiedmann, Martin; Ganda, Erika Share Save
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Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes Armstrong, George; Cantrell, Kalen; Huang, Shi; McDonald, Daniel; Haiminen, Niina; Carrieri, Anna Paola; Zhu, Qiyun; Gonzalez, Antonio; McGrath, Imran; Beck, Kristen L.; Hakim, Daniel; Havulinna, Aki S.; Meric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Jain, Mohit; Inouye, Michael; Swafford, Austin D.; Kim, Ho-Cheol; Parida, Laxmi; Vazquez-Baeza, Yoshiki; Knight, Rob Share Save
Interpreting machine learning models to investigate circadian regulation and facilitate exploration of clock function Gardiner, Laura-Jayne; Rusholme-Pilcher, Rachel; Colmer, Josh; Rees, Hannah; Crescente, Juan Manuel; Carrieri, Anna Paola; Duncan, Susan; Pyzer-Knapp, Edward O.; Krishna, Ritesh; Hall, Anthony Share Save
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment Marotz, Clarisse; Belda-Ferre, Pedro; Ali, Farhana; Das, Promi; Huang, Shi; Cantrell, Kalen; Jiang, Lingjing; Martino, Cameron; Diner, Rachel E.; Rahman, Gibraan; McDonald, Daniel; Armstrong, George; Kodera, Sho; Donato, Sonya; Ecklu-Mensah, Gertrude; Gottel, Neil; Salas Garcia, Mariana C.; Chiang, Leslie Y.; Salido, Rodolfo A.; Shaffer, Justin P.; Bryant, Mac Kenzie; Sanders, Karenina; Humphrey, Greg; Ackermann, Gail; Haiminen, Niina; Beck, Kristen L.; Kim, Ho-Cheol; Carrieri, Anna Paola; Parida, Laxmi; Vazquez-Baeza, Yoshiki; Torriani, Francesca J.; Knight, Rob; Gilbert, Jack; Sweeney, Daniel A.; Allard, Sarah M. Share Save
Challenges in benchmarking metagenomic profilers Sun, Zheng; Huang, Shi; Zhang, Meng; Zhu, Qiyun; Haiminen, Niina; Carrieri, Anna Paola; Vazquez-Baeza, Yoshiki; Parida, Laxmi; Kim, Ho-Cheol; Knight, Rob; Liu, Yang-Yu Share Save
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets Cantrell, Kalen; Fedarko, Marcus W.; Rahman, Gibraan; McDonald, Daniel; Yang, Yimeng; Zaw, Thant; Gonzalez, Antonio; Janssen, Stefan; Estaki, Mehrbod; Haiminen, Niina; Beck, Kristen L.; Zhu, Qiyun; Sayyari, Erfan; Morton, James T.; Armstrong, George; Tripathi, Anupriya; Gauglitz, Julia M.; Marotz, Clarisse; Matteson, Nathaniel L.; Martino, Cameron; Sanders, Jon G.; Carrieri, Anna Paola; Song, Se Jin; Swafford, Austin D.; Dorrestein, Pieter C.; Andersen, Kristian G.; Parida, Laxmi; Kim, Ho-Cheol; Vazquez-Baeza, Yoshiki; Knight, Rob Share Save
Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences Carrieri, Anna Paola; Haiminen, Niina; Maudsley-Barton, Sean; Gardiner, Laura-Jayne; Murphy, Barry; Mayes, Andrew E.; Paterson, Sarah; Grimshaw, Sally; Winn, Martyn; Shand, Cameron; Hadjidoukas, Panagiotis; Rowe, Will P. M.; Hawkins, Stacy; MacGuire-Flanagan, Ashley; Tazzioli, Jane; Kenny, John G.; Parida, Laxmi; Hoptroff, Michael; Pyzer-Knapp, Edward O. Share Save
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Human Skin, Oral, and Gut Microbiomes Predict Chronological Age Huang, Shi; Haiminen, Niina; Carrieri, Anna-Paola; Hu, Rebecca; Jiang, Lingjing; Parida, Laxmi; Russell, Baylee; Allaband, Celeste; Zarrinpar, Amir; Vazquez-Baeza, Yoshiki; Belda-Ferre, Pedro; Zhou, Hongwei; Kim, Ho-Cheol; Swafford, Austin D.; Knight, Rob; Xu, Zhenjiang Zech Share Save
Streaming histogram sketching for rapid microbiome analytics Rowe, Will P. M.; Carrieri, Anna Paola; Alcon-Giner, Cristina; Caim, Shabhonam; Shaw, Alex; Sim, Kathleen; Kroll, J. Simon; Hall, Lindsay J.; Pyzer-Knapp, Edward O.; Winn, Martyn D. Share Save
Accelerating molecular discovery through data and physical sciences: Applications to peptide-membrane interactions Cipcigan, Flaviu; Carrieri, Anna Paola; Pyzer-Knapp, Edward O.; Krishna, Ritesh; Hsiao, Ya-Wen; Winn, Martyn; Ryadnov, Maxim G.; Edge, Colin; Martyna, Glenn; Crain, Jason Share Save
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