Mark S. Baker - Publications, H-index & Citations

Back

Mark S. Baker

dept of surgery

50H-index

252Paper Count

8.8KCitation Count

Published Papers 71

Publication Date

Computationally-directed mechanical ventilation in a porcine model of ARDS

Frontiers in Physiology

IF3.4

2025-11-27

OAAI

Michaela Kollisch-Singule; Andrea F. Cruz; Jacob Herrmann; Joshua Satalin; Sarah Satalin; Brian P. Harvey; Dorian LeCroy; George Beck; Mark Lutz; Jacob Charlamb; Joshua Kenna; Mark Baker; Gary F. Nieman; David W. Kaczka

Save

Resected Intrahepatic Cholangiocarcinoma: Is Adjuvant Chemotherapy Associated with Improved Overall Survival?

The American Journal of Surgery

IF0

2025-11-27

PREAI

R.L. Wolansky; M.A. Kendall; T. Zander; J. Sujka; P.C. Kuo; M.S. Baker

Save

π-HuB: the proteomic navigator of the human body (Vol 636, pg 322, 2024)

NATURE

IF48.5

2024-12-23

PREAI

He, Fuchu; Aebersold, Ruedi; Baker, Mark S.; Bian, Xiuwu; Bo, Xiaochen; Chan, Daniel W.; Chang, Cheng; Chen, Luonan; Chen, Xiangmei; Chen, Yu-Ju; Cheng, Heping; Collins, Ben C.; Corrales, Fernando; Cox, Juergen; E, Weinan; Van Eyk, Jennifer E.; Fan, Jia; Faridi, Pouya; Figeys, Daniel; Gao, George Fu; Gao, Wen; Gao, Zu-Hua; Goda, Keisuke; Goh, Wilson Wen Bin; Gu, Dongfeng; Guo, Changjiang; Guo, Tiannan; He, Yuezhong; Heck, Albert J. R.; Hermjakob, Henning; Hunter, Tony; Iyer, Narayanan Gopalakrishna; Jiang, Ying; Jimenez, Connie R.; Joshi, Lokesh; Kelleher, Neil L.; Li, Ming; Li, Yang; Lin, Qingsong; Liu, Cui Hua; Liu, Fan; Liu, Guang-Hui; Liu, Yansheng; Liu, Zhihua; Low, Teck Yew; Lu, Ben; Mann, Matthias; Meng, Anming; Moritz, Robert L.; Nice, Edouard; Ning, Guang; Omenn, Gilbert S.; Overall, Christopher M.; Palmisano, Giuseppe; Peng, Yaojin; Pineau, Charles; Poon, Terence Chuen Wai; Purcell, Anthony W.; Qiao, Jie; Reddel, Roger R.; Robinson, Phillip J.; Roncada, Paola; Sander, Chris; Sha, Jiahao; Song, Erwei; Srivastava, Sanjeeva; Sun, Aihua; Sze, Siu Kwan; Tang, Chao; Tang, Liujun; Tian, Ruijun; Vizcaino, Juan Antonio; Wang, Chanjuan; Wang, Chen; Wang, Xiaowen; Wang, Xinxing; Wang, Yan; Weiss, Tobias; Wilhelm, Mathias; Winkler, Robert; Wollscheid, Bernd; Wong, Limsoon; Xie, Linhai; Xie, Wei; Xu, Tao; Xu, Tianhao; Yan, Liying; Yang, Jing; Yang, Xiao; Yates, John; Yun, Tao; Zhai, Qiwei; Zhang, Bing; Zhang, Hui; Zhang, Lihua; Zhang, Lingqiang; Zhang, Pingwen; Zhang, Yukui; Zheng, Yu Zi; Zhong, Qing; IT-HuB Consortium, Daniel W.

Save

The Low-Abundance Plasma Proteome Reveals Differentially Abundant Proteins Associated with Breast Implant Capsular Contracture: A Pilot Study

PROTEOMES

IF3.6

2024-08-06

OAAI

Rahman, Md. Arifur; Amirkhani, Ardeshir; Mempin, Maria; Ahn, Seong Beom; Deva, Anand K.; Baker, Mark S.; Vickery, Karen; Hu, Honghua

Save

Analysis of Dam Failure and Incident Investigations in the United States from 1960 through 2022: Framework for Improving Future Investigations

water resources management

IF2.7

2024-03-01

PREAI

Gee, Nathaniel; Baker, Mark; Mauney, Lee; Hotchkiss, Rollin H.

Save

Neuroserpin gene therapy inhibits retinal ganglion cell apoptosis and promotes functional preservation in glaucoma

MOLECULAR THERAPY

IF12

2023-07-01

OAAI

Chitranshi, Nitin; Rajput, Rashi; Godinez, Angela; Pushpitha, Kanishka; Mirzaei, Mehdi; Basavarajappa, Devaraj; Gupta, Veer; Sharma, Samridhi; You, Yuyi; Galliciotti, Giovanna; Salekdeh, Ghasem H.; Baker, Mark S.; Graham, Stuart L.; Gupta, Vivek K.

Save

Use of a Recombinant Biomarker Protein DDA Library Increases DIA Coverage of Low Abundance Plasma Proteins

JOURNAL OF PROTEOME RESEARCH

IF3.6

2021-03-22

OAAI

Ahn, Seong Beom; Kamath, Karthik S.; Mohamedali, Abidali; Noor, Zainab; Wu, Jemma X.; Pascovici, Dana; Adhikari, Subash; Cheruku, Harish R.; Guillemin, Gilles J.; McKay, Matthew J.; Nice, Edouard C.; Baker, Mark S.

Save

Role of Multiomics Data to Understand Host-Pathogen Interactions in COVID-19 Pathogenesis

JOURNAL OF PROTEOME RESEARCH

IF3.6

2021-01-11

OAAI

Aggarwal, Shalini; Acharjee, Arup; Mukherjee, Amrita; Baker, Mark S.; Srivastava, Sanjeeva

Save

A high-stringency blueprint of the human proteome

NATURE COMMUNICATIONS

IF15.7

2020-10-16

151

OAAI

Adhikari, Subash; Nice, Edouard C.; Deutsch, Eric W.; Lane, Lydie; Omenn, Gilbert S.; Pennington, Stephen R.; Paik, Young-Ki; Overall, Christopher M.; Corrales, Fernando J.; Cristea, Ileana M.; Van Eyk, Jennifer E.; Uhlen, Mathias; Lindskog, Cecilia; Chan, Daniel W.; Bairoch, Amos; Waddington, James C.; Justice, Joshua L.; LaBaer, Joshua; Rodriguez, Henry; He, Fuchu; Kostrzewa, Markus; Ping, Peipei; Gundry, Rebekah L.; Stewart, Peter; Srivastava, Sanjeeva; Srivastava, Sudhir; Nogueira, Fabio C. S.; Domont, Gilberto B.; Vandenbrouck, Yves; Lam, Maggie P. Y.; Wennersten, Sara; Vizcaino, Juan Antonio; Wilkins, Marc; Schwenk, Jochen M.; Lundberg, Emma; Bandeira, Nuno; Marko-Varga, Gyorgy; Weintraub, Susan T.; Pineau, Charles; Kusebauch, Ulrike; Moritz, Robert L.; Ahn, Seong Beom; Palmblad, Magnus; Snyder, Michael P.; Aebersold, Ruedi; Baker, Mark S.

Save

Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project

JOURNAL OF PROTEOME RESEARCH

IF3.6

2020-09-15

OAAI

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Cristea, Ileana M.; Corrales, Fernando J.; Lindskog, Cecilia; Paik, Young-Ki; Van Eyk, Jennifer E.; Liu, Siqi; Pennington, Stephen R.; Snyder, Michael P.; Baker, Mark S.; Bandeira, Nuno; Aebersold, Ruedi; Moritz, Robert L.; Deutsch, Eric W.

Save

Mass spectrometry-based protein identification in proteomics-a review

BRIEFINGS IN BIOINFORMATICS

IF7.7

2020-02-11

PREAI

Noor, Zainab; Ahn, Seong Beom; Baker, Mark S.; Ranganathan, Shoba; Mohamedali, Abidali

Save

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

JOURNAL OF PROTEOME RESEARCH

IF3.6

2019-10-10

OAAI

Deutsch, Eric W.; Lane, Lydie; Overall, Christopher M.; Bandeira, Nuno; Baker, Mark S.; Pineau, Charles; Moritz, Robert L.; Corrales, Fernando; Orchard, Sandra; Van Eyk, Jennifer E.; Paik, Young-Ki; Weintraub, Susan T.; Vandenbrouck, Yves; Omenn, Gilbert S.

Save

Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data

JOURNAL OF PROTEOME RESEARCH

IF3.6

2019-10-01

135

OAAI

Ignjatovic, Vera; Geyer, Philipp E.; Palaniappan, Krishnan K.; Chaaban, Jessica E.; Omenn, Gilbert S.; Baker, Mark S.; Deutsch, Eric W.; Schwenk, Jochen M.

Save

Proteomics Reveals Cell-Surface Urokinase Plasminogen Activator Receptor Expression Impacts Most Hallmarks of Cancer

PROTEOMICS

IF3.9

2019-09-08

PREAI

Ahn, Seong Beom; Mohamedali, Abidali; Pascovici, Dana; Adhikari, Subash; Sharma, Samridhi; Nice, Edouard C.; Baker, Mark S.

Save

Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project

JOURNAL OF PROTEOME RESEARCH

IF3.6

2019-08-20

OAAI

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Corrales, Fernando J.; Schwenk, Jochen M.; Paik, Young-Ki; Van Eyk, Jennifer E.; Liu, Siqi; Pennington, Stephen; Snyder, Michael P.; Baker, Mark S.; Deutsch, Eric W.

Save

Oncoproteomics: Current status and future opportunities

CLINICA CHIMICA ACTA

IF2.9

2019-08-01

PREAI

He, Yujia; Mohamedali, Abidali; Huang, Canhua; Baker, Mark S.; Nice, Edouard C.

Save

In Silico Peptide Repertoire of Human Olfactory Receptor Proteomes on High-Stringency Mass Spectrometry

JOURNAL OF PROTEOME RESEARCH

IF3.6

2019-05-03

PREAI

Adhikari, Subash; Sharma, Samridhi; Ahn, Seong Beom; Baker, Mark S.

Save

CHARACTERIZING THE PRIAPISM SUPERUSER: A LONGITUDINAL, POPULATION-BASED STUDY

JOURNAL OF SEXUAL MEDICINE

IF3.3

2019-04-01

PREAI

Nelson, M.; Kirshenbaum, E.; Bajic, P.; Farooq, A.; Baker, M.

Save

Proteomics and the microbiome: pitfalls and potential

EXPERT REVIEW OF PROTEOMICS

IF2.8

2018-09-28

PREAI

Lin, Huafeng; He, Qing-Yu; Shi, Lei; Sleeman, Mark; Baker, Mark S.; Nice, Edouard C.

Save

Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains

METABOLIC ENGINEERING

IF6.8

2018-09-01

OAAI

Varela, Cristian; Schmidt, Simon A.; Borneman, Anthony R.; Pang, Chi Nam Ignatius; Kromerx, Jens O.; Khan, Alamgir; Song, Xiaomin; Hodson, Mark P.; Solomon, Mark; Mayr, Christine M.; Hines, Wade; Pretorius, Isak S.; Baker, Mark S.; Roessner, Ute; Mercurio, Meagan; Henschke, Paul A.; Wilkins, Marc R.; Chambers, Paul J.

Save

Research Directions