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Lu, Ran; Garin-Laflam, Monica; Drakeb, Austin; Fulton, Ryan; Lee, Nakyung; Pop, Mihai; Abutaleb, Nader; Seleem, Mohamed; Oakland, David N.; Luo, Xin M. Share Save Share Save Share Save Share Save Share Save Share Save Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigationCommichaux, Seth; Rand, Hugh; Javkar, Kiran; Molloy, Erin K.; Pettengill, James B.; Pightling, Arthur; Hoffmann, Maria; Pop, Mihai; Jayeola, Victor; Foley, Steven; Luo, Yan Share Save Share Save Variations in Bacterial Communities and Antibiotic Resistance Genes Across Diverse Recycled and Surface Water Irrigation Sources in the Mid-Atlantic and Southwest United States: A CONSERVE Two-Year Field StudyMalayil, Leena; Ramachandran, Padmini; Chattopadhyay, Suhana; Allard, Sarah M.; Bui, Anthony; Butron, Jicell; Callahan, Mary Theresa; Craddock, Hillary A.; Murray, Rianna; East, Cheryl; Sharma, Manan; Kniel, Kalmia; Micallef, Shirley; Hashem, Fawzy; Gerba, Charles P.; Ravishankar, Sadhana; Parveen, Salina; May, Eric; Handy, Eric; Kulkarni, Prachi; Anderson-Coughlin, Brienna; Craighead, Shani; Gartley, Samantha; Vanore, Adam; Duncan, Rico; Foust, Derek; Betancourt, Walter; Zhu, Libin; Mongodin, Emmanuel F.; Sapkota, Amir; Pop, Mihai; Haymaker, Joseph; Sapkota, Amy R. Share Save SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learningBalaji, Advait; Kille, Bryce; Kappell, Anthony D.; Godbold, Gene D.; Diep, Madeline; Elworth, R. A. Leo; Qian, Zhiqin; Albin, Dreycey; Nasko, Daniel J.; Shah, Nidhi; Pop, Mihai; Segarra, Santiago; Ternus, Krista L.; Treangen, Todd J. Share Save Share Save Whole-Genome Assessment of Clinical Acinetobacter baumannii Isolates Uncovers Potentially Novel Factors Influencing Carbapenem ResistanceJavkar, Kiran; Rand, Hugh; Hoffmann, Maria; Luo, Yan; Sarria, Saul; Thirunavukkarasu, Nagarajan; Pillai, Christine A.; McGann, Patrick; Johnson, J. Kristie; Strain, Errol; Pop, Mihai Share Save Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short readsCommichaux, Seth; Javkar, Kiran; Ramachandran, Padmini; Nagarajan, Niranjan; Bertrand, Denis; Chen, Yi; Reed, Elizabeth; Gonzalez-Escalona, Narjol; Strain, Errol; Rand, Hugh; Pop, Mihai; Ottesen, Andrea Share Save Share Save Genomic Drivers of Multidrug-Resistant Shigella Affecting Vulnerable Patient Populations in the United States and AbroadWorley, Jay Noboru; Javkar, Kiran; Hoffmann, Maria; Hysell, Kristen; Garcia-Williams, Amanda; Tagg, Kaitlin; Kanjilal, Sanjat; Strain, Errol; Pop, Mihai; Allard, Marc; Watkins, Louise Francois; Bry, Lynn Share Save Zero-Valent Iron Sand Filtration Can Reduce Human and Plant Pathogenic Bacteria While Increasing Plant Growth Promoting Bacteria in Reclaimed WaterKulkarni, Prachi; Olson, Nathan D.; Bui, Anthony Q.; Bradshaw, Rhodel N.; Del Collo, Laura P.; Hittle, Lauren E.; Handy, Eric T.; Paulson, Joseph N.; Ghurye, Jay; Nasko, Daniel J.; East, Cheryl; Van Kessel, Jo Ann; Kniel, Kalmia E.; Chiu, Pei C.; Mongodin, Emmanuel F.; Pop, Mihai; Sharma, Manan; Sapkota, Amy R. Share Save Share Save Benchmarking of computational error-correction methods for next-generation sequencing dataMitchell, Keith; Brito, Jaqueline J.; Mandric, Igor; Wu, Qiaozhen; Knyazev, Sergey; Chang, Sei; Martin, Lana S.; Karlsberg, Aaron; Gerasimov, Ekaterina; Littman, Russell; Hill, Brian L.; Wu, Nicholas C.; Yang, Harry Taegyun; Hsieh, Kevin; Chen, Linus; Littman, Eli; Shabani, Taylor; Enik, German; Yao, Douglas; Sun, Ren; Schroeder, Jan; Eskin, Eleazar; Zelikovsky, Alex; Skums, Pavel; Pop, Mihai; Mangul, Serghei Share Save 
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