Not logged inMultiplexed, image-based pooled screens in primary cells and tissues with PerturbView (OCT, 10.1038/s41587-024-02391-0, 2024)
Kudo, Takamasa; Meireles, Ana M.; Moncada, Reuben; Chen, Yushu; Wu, Ping; Gould, Joshua; Hu, Xiaoyu; Kornfeld, Opher; Jesudason, Rajiv; Foo, Conrad; Hockendorf, Burkhard; Corrada Bravo, Hector; Town, Jason P.; Wei, Runmin; Rios, Antonio; Chandrasekar, Vineethkrishna; Heinlein, Melanie; Chuong, Amy S.; Cai, Shuangyi; Lu, Cherry Sakura; Coelho, Paula; Mis, Monika; Celen, Cemre; Kljavin, Noelyn; Jiang, Jian; Richmond, David; Thakore, Pratiksha; Benito-Gutierrez, Elia; Geiger-Schuller, Kathryn; Hleap, Jose Sergio; Kayagaki, Nobuhiko; Melo, Felipe; Mcginnis, Lisa; Li, Bo; Singh, Avtar; Garraway, Levi; Rozenblatt-Rosen, Orit; Regev, Aviv; Lubeck, Eric .png)
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SaveMultiplexed, image-based pooled screens in primary cells and tissues with PerturbViewKudo, Takamasa; Meireles, Ana M.; Moncada, Reuben; Chen, Yushu; Wu, Ping; Gould, Joshua; Hu, Xiaoyu; Kornfeld, Opher; Jesudason, Rajiv; Foo, Conrad; Hockendorf, Burkhard; Bravo, Hector Corrada; Town, Jason P.; Wei, Runmin; Rios, Antonio; Chandrasekar, Vineethkrishna; Heinlein, Melanie; Chuong, Amy S.; Cai, Shuangyi; Lu, Cherry Sakura; Coelho, Paula; Mis, Monika; Celen, Cemre; Kljavin, Noelyn; Jiang, Jian; Richmond, David; Thakore, Pratiksha; Benito-Gutierrez, Elia; Geiger-Schuller, Kathryn; Hleap, Jose Sergio; Kayagaki, Nobuhiko; Melo, Felipe; McGinnis, Lisa; Li, Bo; Singh, Avtar; Garraway, Levi; Rozenblatt-Rosen, Orit; Regev, Aviv; Lubeck, Eric Share Save STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualizationXu, Zhicheng; Wang, Weiwen; Yang, Tao; Li, Ling; Ma, Xizheng; Chen, Jing; Wang, Jieyu; Huang, Yan; Gould, Joshua; Lu, Huifang; Du, Wensi; Sahu, Sunil Kumar; Yang, Fan; Li, Zhiyong; Hu, Qingjiang; Hua, Cong; Hu, Shoujie; Liu, Yiqun; Cai, Jia; You, Lijin; Zhang, Yong; Li, Yuxiang; Zeng, Wenjun; Chen, Ao; Wang, Bo; Liu, Longqi; Chen, Fengzhen; Ma, Kailong; Xu, Xun; Wei, Xiaofeng Share Save Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatmentHwang, William L.; Jagadeesh, Karthik A.; Guo, Jimmy A.; Hoffman, Hannah, I; Yadollahpour, Payman; Reeves, Jason W.; Mohan, Rahul; Drokhlyansky, Eugene; Van Wittenberghe, Nicholas; Ashenberg, Orr; Farhi, Samouil L.; Schapiro, Denis; Divakar, Prajan; Miller, Eric; Zollinger, Daniel R.; Eng, George; Schenkel, Jason M.; Su, Jennifer; Shiau, Carina; Yu, Patrick; Freed-Pastor, William A.; Abbondanza, Domenic; Mehta, Arnav; Gould, Joshua; Lambden, Conner; Porter, Caroline B. M.; Tsankov, Alexander; Dionne, Danielle; Waldman, Julia; Cuoco, Michael S.; Lan Nguyen; Delorey, Toni; Phillips, Devan; Barth, Jaimie L.; Kem, Marina; Rodrigues, Clifton; Ciprani, Debora; Roldan, Jorge; Zelga, Piotr; Jorgji, Vjola; Chen, Jonathan H.; Ely, Zackery; Zhao, Daniel; Fuhrman, Kit; Fropf, Robin; Beechem, Joseph M.; Loeffler, Jay S.; Ryan, David P.; Weekes, Colin D.; Ferrone, Cristina R.; Qadan, Motaz; Aryee, Martin J.; Jain, Rakesh K.; Neuberg, Donna S.; Wo, Jennifer Y.; Hong, Theodore S.; Xavier, Ramnik; Aguirre, Andrew J.; Rozenblatt-Rosen, Orit; Mino-Kenudson, Mari; Fernandez-del Castillo, Carlos; Liss, Andrew S.; Ting, David T.; Jacks, Tyler; Regev, Aviv Share Save Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographicsMuus, Christoph; Luecken, Malte D.; Eraslan, Gokcen; Sikkema, Lisa; Waghray, Avinash; Heimberg, Graham; Kobayashi, Yoshihiko; Vaishnav, Eeshit Dhaval; Subramanian, Ayshwarya; Smillie, Christopher; Jagadeesh, Karthik A.; Duong, Elizabeth Thu; Fiskin, Evgenij; Triglia, Elena Torlai; Ansari, Meshal; Cai, Peiwen; Lin, Brian; Buchanan, Justin; Chen, Sijia; Shu, Jian; Haber, Adam L.; Chung, Hattie; Montoro, Daniel T.; Adams, Taylor; Aliee, Hananeh; Allon, Samuel J.; Andrusivova, Zaneta; Angelidis, Ilias; Ashenberg, Orr; Bassler, Kevin; Becavin, Christophe; Benhar, Inbal; Bergenstrahle, Joseph; Bergenstrahle, Ludvig; Bolt, Liam; Braun, Emelie; Bui, Linh T.; Callori, Steven; Chaffin, Mark; Chichelnitskiy, Evgeny; Chiou, Joshua; Conlon, Thomas M.; Cuoco, Michael S.; Cuomo, Anna S. E.; Deprez, Marie; Duclos, Grant; Fine, Denise; Fischer, David S.; Ghazanfar, Shila; Gillich, Astrid; Giotti, Bruno; Gould, Joshua; Guo, Minzhe; Gutierrez, Austin J.; Habermann, Arun C.; Harvey, Tyler; He, Peng; Hou, Xiaomeng; Hu, Lijuan; Hu, Yan; Jaiswal, Alok; Ji, Lu; Jiang, Peiyong; Kapellos, Theodoros S.; Kuo, Christin S.; Larsson, Ludvig; Leney-Greene, Michael A.; Lim, Kyungtae; Litvinukova, Monika; Ludwig, Leif S.; Lukassen, Soeren; Luo, Wendy; Maatz, Henrike; Madissoon, Elo; Mamanova, Lira; Manakongtreecheep, Kasidet; Leroy, Sylvie; Mayr, Christoph H.; Mbano, Ian M.; McAdams, Alexi M.; Nabhan, Ahmad N.; Nyquist, Sarah K.; Penland, Lolita; Poirion, Olivier B.; Poli, Sergio; Qi, CanCan; Queen, Rachel; Reichart, Daniel; Rosas, Ivan; Schupp, Jonas C.; Shea, Conor, V; Shi, Xingyi; Sinha, Rahul; Sit, Rene, V; Slowikowski, Kamil; Slyper, Michal; Smith, Neal P.; Sountoulidis, Alex; Strunz, Maximilian; Sullivan, Travis B.; Sun, Dawei; Talavera-Lopez, Carlos; Tan, Peng; Tantivit, Jessica; Travaglini, Kyle J.; Tucker, Nathan R.; Vernon, Katherine A.; Wadsworth, Marc H.; Waldman, Julia; Wang, Xiuting; Xu, Ke; Yan, Wenjun; Zhao, William; Ziegler, Carly G. K. Share Save A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-SeqBoroughs, Angela C.; Larson, Rebecca C.; Marjanovic, Nemanja D.; Gosik, Kirk; Castano, Ana P.; Porter, Caroline B. M.; Lorrey, Selena J.; Ashenberg, Orr; Jerby, Livnat; Hofree, Matan; Smith-Rosario, Gabriela; Morris, Robert; Gould, Joshua; Riley, Lauren S.; Berger, Trisha R.; Riesenfeld, Samantha J.; Rozenblatt-Rosen, Orit; Choi, Bryan D.; Regev, Aviv; Maus, Marcela V. Share Save Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seqLi, Bo; Gould, Joshua; Yang, Yiming; Sarkizova, Siranush; Tabaka, Marcin; Ashenberg, Orr; Rosen, Yanay; Slyper, Michal; Kowalczyk, Monika S.; Villani, Alexandra-Chloe; Tickle, Timothy; Hacohen, Nir; Rozenblatt-Rosen, Orit; Regev, Aviv Share Save A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors (vol 26, pg 792, 2020)Slyper, Michal; Porter, Caroline B. M.; Ashenberg, Orr; Waldman, Julia; Drokhlyansky, Eugene; Wakiro, Isaac; Smillie, Christopher; Smith-Rosario, Gabriela; Wu, Jingyi; Dionne, Danielle; Vigneau, Sebastien; Jane-Valbuena, Judit; Tickle, Timothy L.; Napolitano, Sara; Su, Mei-Ju; Patel, Anand G.; Karlstrom, Asa; Gritsch, Simon; Nomura, Masashi; Waghray, Avinash; Gohil, Satyen H.; Tsankov, Alexander M.; Jerby-Arnon, Livnat; Cohen, Ofir; Klughammer, Johanna; Rosen, Yanay; Gould, Joshua; Nguyen Lan; Hofree, Matan; Tramontozzi, Peter J.; Li, Bo; Wu, Catherine J.; Izar, Benjamin; Haq, Rizwan; Hodi, F. Stephen; Yoon, Charles H.; Hata, Aaron N.; Baker, Suzanne J.; Suva, Mario L.; Bueno, Raphael; Stover, Elizabeth H.; Clay, Michael R.; Dyer, Michael A.; Collins, Natalie B.; Matulonis, Ursula A.; Wagle, Nikhil; Johnson, Bruce E.; Rotem, Asaf; Rozenblatt-Rosen, Orit; Regev, Aviv Share Save A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumorsSlyper, Michal; Porter, Caroline B. M.; Ashenberg, Orr; Waldman, Julia; Drokhlyansky, Eugene; Wakiro, Isaac; Smillie, Christopher; Smith-Rosario, Gabriela; Wu, Jingyi; Dionne, Danielle; Vigneau, Sebastien; Jane-Valbuena, Judit; Tickle, Timothy L.; Napolitano, Sara; Su, Mei-Ju; Patel, Anand G.; Karlstrom, Asa; Gritsch, Simon; Nomura, Masashi; Waghray, Avinash; Gohil, Satyen H.; Tsankov, Alexander M.; Jerby-Arnon, Livnat; Cohen, Ofir; Klughammer, Johanna; Rosen, Yanay; Gould, Joshua; Lan Nguyen; Hofree, Matan; Tramontozzi, Peter J.; Li, Bo; Wu, Catherine J.; Izar, Benjamin; Haq, Rizwan; Hodi, F. Stephen; Yoon, Charles H.; Hata, Aaron N.; Baker, Suzanne J.; Suva, Mario L.; Bueno, Raphael; Stover, Elizabeth H.; Clay, Michael R.; Dyer, Michael A.; Collins, Natalie B.; Matulonis, Ursula A.; Wagle, Nikhil; Johnson, Bruce E.; Rotem, Asaf; Rozenblatt-Rosen, Orit; Regev, Aviv Share Save High-definition spatial transcriptomics for in situ tissue profilingVickovic, Sanja; Eraslan, Gokcen; Salmen, Fredrik; Klughammer, Johanna; Stenbeck, Linnea; Schapiro, Denis; Aijo, Tarmo; Bonneau, Richard; Bergenstrahle, Ludvig; Navarro, Jose Fernandez; Gould, Joshua; Griffin, Gabriel K.; Borg, Ake; Ronaghi, Mostafa; Frisen, Jonas; Lundeberg, Joakim; Regev, Aviv; Stahl, Patrik L. Share Save Neoantigens from translated unannotated open reading frames in cancerOuspenskaia, Tamara; Law, Travis E.; Clauser, Karl R.; Klaeger, Susan; Keskin, Derin B.; Li, Bo; Christian, Elena; Chow, Yuen Ting; Le, Phuong M.; Gould, Joshua; Ji, Zhe; Zhang, Wandi; Bachireddy, Pavan; Sarkizova, Siranush; Hacohen, Nir; Carr, Steven A.; Wu, Catherine J.; Regev, Aviv Share Save A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug PerturbationsLitichevskiy, Lev; Peckner, Ryan; Abelin, Jennifer G.; Asiedu, Jacob K.; Creech, Amanda L.; Davis, John F.; Davison, Desiree; Dunning, Caitlin M.; Egertson, Jarrett D.; Egri, Shawn; Gould, Joshua; Ko, Tak; Johnson, Sarah A.; Lahr, David L.; Lam, Daniel; Liu, Zihan; Lyons, Nicholas J.; Lu, Xiaodong; MacLean, Brendan X.; Mungenast, Alison E.; Officer, Adam; Natoli, Ted E.; Papanastasiou, Malvina; Patel, Jinal; Sharma, Vagisha; Toder, Courtney; Tubelli, Andrew A.; Young, Jennie Z.; Carr, Steven A.; Golub, Todd R.; Subramanian, Aravind; MacCoss, Michael J.; Tsai, Li-Huei; Jaffe, Jacob D. Share Save The Drug Repurposing Hub: a next-generation drug library and information resourceCorsello, Steven M.; Bittker, Joshua A.; Liu, Zihan; Gould, Joshua; McCarren, Patrick; Hirschman, Jodi E.; Johnston, Stephen E.; Vrcic, Anita; Wong, Bang; Khan, Mariya; Asiedu, Jacob; Narayan, Rajiv; Mader, Christopher C.; Subramanian, Aravind; Golub, Todd R. Share Save Genetic interrogation of circulating multiple myeloma cells at single-cell resolutionLohr, Jens G.; Kim, Sora; Gould, Joshua; Knoechel, Birgit; Drier, Yotam; Cotton, Matthew J.; Gray, Daniel; Birrer, Nicole; Wong, Bang; Ha, Gavin; Zhang, Cheng-Zhong; Guo, Guangwu; Meyerson, Matthew; Yee, Andrew J.; Boehm, Jesse S.; Raje, Noopur; Golub, Todd R. Share Save Targeting MTH FD2 in acute myeloid leukemiaPikman, Yana; Puissant, Alexandre; Alexe, Gabriela; Furman, Andrew; Chen, Liying M.; Frumm, Stacey M.; Ross, Linda; Fenouille, Nina; Bassil, Christopher F.; Lewis, Caroline A.; Ramos, Azucena; Gould, Joshua; Stone, Richard M.; DeAngelo, Daniel J.; Galinsky, Ilene; Clish, Clary B.; Kung, Andrew L.; Hemann, Michael T.; Vander Heiden, Matthew G.; Banerji, Versha; Stegmaier, Kimberly Share Save High-throughput identification of genotype-specific cancer vulnerabilities in mixtures of barcoded tumor cell linesYu, Channing; Mannan, Aristotle M.; Yvone, Griselda Metta; Ross, Kenneth N.; Zhang, Yan-Ling; Marton, Melissa A.; Taylor, Bradley R.; Crenshaw, Andrew; Gould, Joshua Z.; Tamayo, Pablo; Weir, Barbara A.; Tsherniak, Aviad; Wong, Bang; Garraway, Levi A.; Shamji, Alykhan F.; Palmer, Michelle A.; Foley, Michael A.; Winckler, Wendy; Schreiber, Stuart L.; Kung, Andrew L.; Golub, Todd R. Share Save Share Save Share Save Harnessing Connectivity in a Large-Scale Small-Molecule Sensitivity DatasetSeashore-Ludlow, Brinton; Rees, Matthew G.; Cheah, Jaime H.; Cokol, Murat; Price, Edmund V.; Coletti, Matthew E.; Jones, Victor; Bodycombe, Nicole E.; Soule, Christian K.; Gould, Joshua; Alexander, Benjamin; Li, Ava; Montgomery, Philip; Wawer, Mathias J.; Kuru, Nurdan; Kotz, Joanne D.; Hon, C. Suk-Yee; Munoz, Benito; Liefeld, Ted; Dancik, Vlado; Bittker, Joshua A.; Palmer, Michelle; Bradner, James E.; Shamji, Alykhan F.; Clemons, Paul A.; Schreiber, Stuart L. Share Save Prognostic Gene Expression Signature for Patients With Hepatitis C-Related Early-Stage CirrhosisHoshida, Yujin; Villanueva, Augusto; Sangiovanni, Angelo; Sole, Manel; Hur, Chin; Andersson, Karin L.; Chung, Raymond T.; Gould, Joshua; Kojima, Kensuke; Gupta, Supriya; Taylor, Bradley; Crenshaw, Andrew; Gabriel, Stacey; Minguez, Beatriz; Iavarone, Massimo; Friedman, Scott L.; Colombo, Massimo; Llovet, Josep M.; Golub, Todd R. Share Save 
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