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杨跃东 cover

杨跃东 (Yuedong Yang)

School of Computer Science and Engineering

61H-index
373Paper Count
1.3WCitation Count
Published Papers 154
Publication Date
TransTCR: Integrating TCRs and Transcriptomes Through Optimal Transport for Antigen Specificity Prediction
err2026-08-12
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PREAI
errWenbing Li; Yuansong Zeng; Ruipeng Huang; Yuanze Chen; Jinyun Niu; Ningyuan Shangguan; Siyuan He; Yuedong Yang
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AI proteomics: from protein identification to virtual cells
err2026-07-28
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PREAI
errYingying Sun; Jun A; Zhiwei Liu; Rui Sun; Liujia Qian; Samuel H. Payne; Wout Bittremieux; Markus Ralser; Chen Li; Yi Chen; Zhen Dong; Yasset Perez-Riverol; Asif Khan; Chris Sander; Ruedi Aebersold; Juan Antonio Vizcaíno; Jonathan R. Krieger; Jianhua Yao; Wen Han; Linfeng Zhang; Yunping Zhu; Yue Xuan; Benjamin Boyang Sun; Liang Qiao; Henning Hermjakob; Haixu Tang; Huanhuan Gao; Yamin Deng; Qing Zhong; Cheng Chang; Nuno Bandeira; Ming Li; Weinan E; Siqi Sun; Yuedong Yang; Gilbert S. Omenn; Yue Zhang; Ping Xu; Yan Fu; Xiaowen Liu; Christopher M. Overall; Yu Wang; Eric W. Deutsch; Luonan Chen; Jürgen Cox; Vadim Demichev; Fuchu He; Jiaxing Huang; Huilin Jin; Chao Liu; Nan Li; Zhongzhi Luan; Jiangning Song; Kaicheng Yu; Wanggen Wan; Tai Wang; Kang Zhang; Le Zhang; Peter A. Bell; Matthias Mann; Bing Zhang; Tiannan Guo
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TripKa: Accurate and Scalable Acid–Base Dissociation Property Prediction via Triplet Interaction Networks and Physical Knowledge
err2026-04-13
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PREAI
errWentao Wei; Jiahua Rao; Bai Xue; Jiancong Xie; Dahao Xu; Xichen Sun; Yutong Lu; Yu Wang; Mingjun Yang; Yuedong Yang
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De Novo Molecular Design via Shape-Constrained Diffusion Models
err2026-04-13
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PREAI
errBohao Li; Xinyu Wu; Yu Cao; Jie Lin; Jingpeng Zhong; Hua Chen; Yongzhi Lu; Miru Tang; Jinping Lei; Ting Ran; Yuedong Yang; Mingyuan Xu; Jinsai Shang; Hongming Chen
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Hypergraph-driven spatial multimodal fusion for precise domain delineation and tumor microenvironment decoding
err2025-12-01
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errOAAI
errChengyang Zhang; Xulong Li; Bo Li; Chenxun Deng; Mengran Li; Shiqi Zhang; Weijiang Yu; Hongyu Zhang; Zheng Wang; Yuedong Yang; Yuansong Zeng
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A synergistic generative-ranking framework for tailored design of therapeutic single-domain antibodies
err2025-10-29
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errOAAI
errYu Kong; Jiale Shi; Fandi Wu; Ting Zhao; Rubo Wang; Xiaoyi Zhu; Qingyuan Xu; Yidong Song; Quanxiao Li; Yulu Wang; Xingyu Gao; Yuedong Yang; Yi Feng; Zifei Wang; Weifeng Ge; Yanling Wu; Zhenlin Yang; Jianhua Yao; Tianlei Ying
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Expression of Concern for JAK2-binding long noncoding RNA promotes breast cancer brain metastasis
err2025-10-01
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PREAI
errWang, Shouyu; Liang, Ke; Hu, Qingsong; Li, Ping; Song, Jian; Yang, Yuedong; Yao, Jun; Mangala, Lingegowda Selanere; Li, Chunlai; Yang, Wenhao; Park, Peter K.; Hawke, David H.; Zhou, Jianwei; Zhou, Yan; Xia, Weiya; Hung, Mien-Chie; Marks, Jeffrey R.; Gallick, Gary E.; Lopez-Berestein, Gabriel; Flores, Elsa R.; Sood, Anil K.; Huang, Suyun; Yu, Dihua; Yang, Liuqing; Lin, Chunru
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Accurately Predicting Cell Type Abundance from Spatial Histology Image Through HPCell
err2025-09-03
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PREAI
errYongkang Zhao; Youyang Li; Weijiang Yu; Hongyu Zhang; Zheng Wang; Yuedong Yang; Yuansong Zeng
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Time-dependent S-wave areas by 24-hour ECG are correlated with a high risk of sudden cardiac death: ECG prediction model development and validation for SCD risk
err2025-09-01
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PREAI
errZheng, Ziheng; Cui, Mingyue; Qi, Mengling; Zhao, Huiying; Lei, Yujian; Liu, Xiao; Liu, Wenhao; Chen, Zhiteng; Guo, Qi; Wu, Maoxiong; Chen, Qian; Xie, Xiangkun; Yang, Yuedong; Wu, Liqun; Xu, Wei; Su, Yangang; Chen, Keping; Chen, Yangxin; Theerasuwipakorn, Nonthikorn; Abdelazeem, Basel; Zhang, Yuling; Wang, Jingfeng
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A 3D pocket-aware lead optimization model with knowledge guidance and its application for discovery of new glutaminyl cyclase inhibitors
err2025-07-02
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errAnjie Qiao; Yuting Chen; Junjie Xie; Weifeng Huang; Hao Zhang; Qirui Deng; Jiahua Rao; Ji Deng; Fanbo Meng; Zhen Wang; Mingyuan Xu; Hongming Chen; Jiancong Xie; Shuangjia Zheng; Yuedong Yang; Guo-Bo Li; Jinping Lei
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Deciphering Cell Type Abundance in Proteomics Data Through Graph Neural Networks
err2025-06-20
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errOAAI
errZhiming Dai; Yujie Song; Tuoshi Qi; Hongyu Zhang; Huiying Zhao; Zheng Wang; Yuedong Yang; Yuansong Zeng
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CellFM: a large-scale foundation model pre-trained on transcriptomics of 100 million human cells
err2025-05-20
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errOAAI
errZeng, Yuansong; Xie, Jiancong; Shangguan, Ningyuan; Wei, Zhuoyi; Li, Wenbing; Su, Yun; Yang, Shuangyu; Zhang, Chengyang; Zhang, Jinbo; Fang, Nan; Zhang, Hongyu; Lu, Yutong; Zhao, Huiying; Fan, Jue; Yu, Weijiang; Yang, Yuedong
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Integrating single-cell multi-omics data through self-supervised clustering
err2025-01-01
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PREAI
errZeng, Yuansong; Chen, Jianing; Pan, Zixiang; Yu, Weijiang; Yang, Yuedong
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Imputing spatial transcriptomics through gene network constructed from protein language model
err2024-10-05
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errOAAI
errZeng, Yuansong; Song, Yujie; Zhang, Chengyang; Li, Haoxuan; Zhao, Yongkang; Yu, Weijiang; Zhang, Shiqi; Zhang, Hongyu; Dai, Zhiming; Yang, Yuedong
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Accurately predicting enzyme functions through geometric graph learning on ESMFold-predicted structures
err2024-09-18
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errOAAI
errSong, Yidong; Yuan, Qianmu; Chen, Sheng; Zeng, Yuansong; Zhao, Huiying; Yang, Yuedong
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Research Directions

多尺度组学大数据挖掘全流程药物智能设计生物医药高性能计算平台