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M

Michael C. Zody

Broad Institute

77H-index
220Paper Count
7.6WCitation Count
Published Papers 76
Publication Date
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Lancet2: Improved and accelerated somatic variant calling with joint multi-sample local assembly graphs
errNAR Genomics and Bioinformatics
IF2.8
err2026-04-07
err0
errOAAI
errRajeeva Lochan Musunuri; Bryan Zhu; Wayne E Clarke; William Hooper; Timothy Chu; Jennifer Shelton; André Corvelo; Dickson Chung; Shreya Sundar; Adam M Novak; Benedict Paten; Michael C Zody; Nicolas Robine; Giuseppe Narzisi
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Comparison of variant callers using 60 532 multi-ancestry whole genome sequences
errBriefings in Bioinformatics
IF7.7
err2026-03-01
err0
PREAI
errZhou, Hufeng; Li, Zilin; Shyr, Derek; Li, Xihao; Yang, Haoyu; Dey, Rounak; Tang, Yushi; Maier, Robert; Boerwinkle, Eric; Buyske, Steve; Daly, Mark; Felsenfeld, Adam; Gibbs, Richard A.; Gupta, Namrata; Hall, Ira M.; Matise, Tara; Metcalf, Ginger A.; Smith, Albert; Reeves, Catherine; Sofia, Heidi J.; Stitziel, Nathan O.; Zody, Michael C.; Neale, Benjamin; Lin, Xihong
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errSave
FAVOR 2.0: A reengineered functional annotation of variants online resource for interpreting genomic variation
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-01
err1
PREAI
errZhou, Hufeng; Verma, Vineet; Li, Xihao; Li, Zilin; Shedd, Nicole; Li, Thomas Cheng; Yang, Haoyu; Zhang, Alvin; Borsari, Beatrice; Buyske, Steven; Gerstein, Mark; Matise, Tara; Zody, Michael C.; Neale, Benjamin; Weng, Zhiping; Sunyaev, Shamil R.; Lin, Xihong
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errSave
Stratifying ALS Patients by Mode of Inheritance Reveals Transcriptomic Signatures Specific to sALS and fALS
errInternational Journal of Molecular Sciences 2025, Vol. 26, Page 9234
IF4.9
err2025-09-22
err0
PREAI
errAlexandria Awai; Erica L. Johnson; Tiandong Leng; John Patrickson; Michael C. Zody; James W. Lillard, Jr.; on behalf of the NYGC ALS Consortium
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errSave
A rare genetic variant confers resistance to neurodegeneration across multiple neurological disorders by augmenting selective autophagy
errNeuron
IF15
err2025-09-12
err0
PREAI
errKatherine R. Croce; Christopher Ng; Serihy Pankiv; Eddy Albarran; Peter Langfelder; Ana Ramos de Jesus; Glenn M. Duncan; Nan Wang; Anna Basile; Caitlin McHugh; Nicole A. Litt; Alina Li; Sophia Friedman; Etty P. Cortes; Michael C. Zody; X. William Yang; Jun B. Ding; Jean Paul G. Vonsattel; Anne Simonsen; David E. Housman; Nancy S. Wexler; Ai Yamamoto
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Author Correction: Complex genetic variation in nearly complete human genomes
errNature
IF48.5
err2025-08-26
err0
errOAAI
errGlennis A. Logsdon; Peter Ebert; Peter A. Audano; Mark Loftus; David Porubsky; Jana Ebler; Feyza Yilmaz; Pille Hallast; Timofey Prodanov; DongAhn Yoo; Carolyn A. Paisie; William T. Harvey; Xuefang Zhao; Gianni V. Martino; Mir Henglin; Katherine M. Munson; Keon Rabbani; Chen-Shan Chin; Bida Gu; Hufsah Ashraf; Stephan Scholz; Olanrewaju Austine-Orimoloye; Parithi Balachandran; Marc Jan Bonder; Haoyu Cheng; Zechen Chong; Jonathan Crabtree; Mark Gerstein; Lisbeth A. Guethlein; Patrick Hasenfeld; Glenn Hickey; Kendra Hoekzema; Sarah E. Hunt; Matthew Jensen; Yunzhe Jiang; Sergey Koren; Youngjun Kwon; Chong Li; Heng Li; Jiaqi Li; Paul J. Norman; Keisuke K. Oshima; Benedict Paten; Adam M. Phillippy; Nicholas R. Pollock; Tobias Rausch; Mikko Rautiainen; Yuwei Song; Arda Söylev; Arvis Sulovari; Likhitha Surapaneni; Vasiliki Tsapalou; Weichen Zhou; Ying Zhou; Qihui Zhu; Michael C. Zody; Ryan E. Mills; Scott E. Devine; Xinghua Shi; Michael E. Talkowski; Mark J. P. Chaisson; Alexander T. Dilthey; Miriam K. Konkel; Jan O. Korbel; Charles Lee; Christine R. Beck; Evan E. Eichler; Tobias Marschall
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errSave
Complex genetic variation in nearly complete human genomes
errNature
IF48.5
err2025-07-23
err0
errOAAI
errGlennis A. Logsdon; Peter Ebert; Peter A. Audano; Mark Loftus; David Porubsky; Jana Ebler; Feyza Yilmaz; Pille Hallast; Timofey Prodanov; DongAhn Yoo; Carolyn A. Paisie; William T. Harvey; Xuefang Zhao; Gianni V. Martino; Mir Henglin; Katherine M. Munson; Keon Rabbani; Chen-Shan Chin; Bida Gu; Hufsah Ashraf; Stephan Scholz; Olanrewaju Austine-Orimoloye; Parithi Balachandran; Marc Jan Bonder; Haoyu Cheng; Zechen Chong; Jonathan Crabtree; Mark Gerstein; Lisbeth A. Guethlein; Patrick Hasenfeld; Glenn Hickey; Kendra Hoekzema; Sarah E. Hunt; Matthew Jensen; Yunzhe Jiang; Sergey Koren; Youngjun Kwon; Chong Li; Heng Li; Jiaqi Li; Paul J. Norman; Keisuke K. Oshima; Benedict Paten; Adam M. Phillippy; Nicholas R. Pollock; Tobias Rausch; Mikko Rautiainen; Yuwei Song; Arda Söylev; Arvis Sulovari; Likhitha Surapaneni; Vasiliki Tsapalou; Weichen Zhou; Ying Zhou; Qihui Zhu; Michael C. Zody; Ryan E. Mills; Scott E. Devine; Xinghua Shi; Michael E. Talkowski; Mark J. P. Chaisson; Alexander T. Dilthey; Miriam K. Konkel; Jan O. Korbel; Charles Lee; Christine R. Beck; Evan E. Eichler; Tobias Marschall
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errSave
Error-corrected flow-based sequencing at whole-genome scale and its application to circulating cell-free DNA profiling
errNATURE METHODS
IF32.1
err2025-04-11
err0
PREAI
errCheng, Alexandre Pellan; Widman, Adam J.; Arora, Anushri; Rusinek, Itai; Sossin, Aaron; Rajagopalan, Srinivas; Midler, Nicholas; Hooper, William F.; Murray, Rebecca M.; Halmos, Daniel; Langanay, Theophile; Chu, Hoyin; Inghirami, Giorgio; Potenski, Catherine; Germer, Soren; Marton, Melissa; Manaa, Dina; Helland, Adrienne; Furatero, Rob; Mcclintock, Jaime; Winterkorn, Lara; Steinsnyder, Zoe; Wang, Yohyoh; Alimohamed, Asrar I.; Malbari, Murtaza S.; Saxena, Ashish; Callahan, Margaret K.; Frederick, Dennie T.; Spain, Lavinia; Sigouros, Michael; Manohar, Jyothi; King, Abigail; Wilkes, David; Otilano, John; Elemento, Olivier; Mosquera, Juan Miguel; Jaimovich, Ariel; Lipson, Doron; Turajlic, Samra; Zody, Michael C.; Altorki, Nasser K.; Wolchok, Jedd D.; Postow, Michael A.; Robine, Nicolas; Faltas, Bishoy M.; Boland, Genevieve; Landau, Dan A.
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Omics Approaches to Investigate the Pathogenesis of Suicide
errBIOLOGICAL PSYCHIATRY
IF9
err2024-12-01
err2
PREAI
errBoldrini, Maura; Xiao, Yang; Singh, Tarjinder; Zhu, Chenxu; Jabbi, Mbemba; Pantazopoulos, Harry; Gursoy, Gamze; Martinowich, Keri; Punzi, Giovanna; Vallender, Eric J.; Zody, Michael; Berretta, Sabina; Hyde, Thomas M.; Kleinman, Joel E.; Marenco, Stefano; Roussos, Panagiotis; Lewis, David A.; Turecki, Gustavo; Lehner, Thomas; Mann, J. John
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errSave
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
errGENOME RESEARCH
IF5.5
err2024-10-02
err7
PREAI
errGustafson, Jonas A.; Gibson, Sophia B.; Damaraju, Nikhita; Zalusky, Miranda P. G.; Hoekzema, Kendra; Twesigomwe, David; Yang, Lei; Snead, Anthony A.; Richmond, Phillip A.; De Coster, Wouter; Olson, Nathan D.; Guarracino, Andrea; Li, Qiuhui; Miller, Angela L.; Goffena, Joy; Anderson, Zachary B.; Storz, Sophie H. R.; Ward, Sydney A.; Sinha, Maisha; Gonzaga-Jauregui, Claudia; Clarke, Wayne E.; Basile, Anna O.; Corvelo, Andre; Reeves, Catherine; Helland, Adrienne; Musunuri, Rajeeva Lochan; Revsine, Mahler; Patterson, Karynne E.; Paschal, Cate R.; Zakarian, Christina; Goodwin, Sara; Jensen, Tanner D.; Robb, Esther; McCombie, William Richard; Sedlazeck, Fritz J.; Zook, Justin M.; Montgomery, Stephen B.; Garrison, Erik; Kolmogorov, Mikhail; Schatz, Michael C.; McLaughlin Jr, Richard N.; Dashnow, Harriet; Zody, Michael C.; Loose, Matt; Jain, Miten; Eichler, Evan E.; Miller, Danny E.
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Semi-supervised machine learning method for predicting homogeneous ancestry groups to assess Hardy-Weinberg equilibrium in diverse whole-genome sequencing studies
errAMERICAN JOURNAL OF HUMAN GENETICS
IF8.1
err2024-10-01
err1
PREAI
errShyr, Derek; Dey, Rounak; Li, Xihao; Zhou, Hufeng; Boerwinkle, Eric; Buyske, Steve; Daly, Mark; Gibbs, Richard A.; Hall, Ira; Matise, Tara; Reeves, Catherine; Stitziel, Nathan O.; Zody, Michael; Neale, Benjamin M.; Lin, Xihong
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errSave
Multi-omic analysis of Huntington's disease reveals a compensatory astrocyte state
errNATURE COMMUNICATIONS
IF15.7
err2024-08-08
err0
errOAAI
errParyani, Fahad; Kwon, Ji-Sun; Ng, Christopher W.; Jakubiak, Kelly; Madden, Nacoya; Ofori, Kenneth; Tang, Alice; Lu, Hong; Xia, Shengnan; Li, Juncheng; Mahajan, Aayushi; Davidson, Shawn M.; Basile, Anna O.; Mchugh, Caitlin; Vonsattel, Jean Paul; Hickman, Richard; Zody, Michael C.; Housman, David E.; Goldman, James E.; Yoo, Andrew S.; Menon, Vilas; Al-Dalahmah, Osama
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errSave
Rare genetic variation in fibronectin 1 (FN1) protects against APOEε4 in Alzheimer's disease
errACTA NEUROPATHOLOGICA
IF9.3
err2024-04-10
err6
errOAAI
errBhattarai, Prabesh; Gunasekaran, Tamil Iniyan; Belloy, Michael E.; Reyes-Dumeyer, Dolly; Julich, Dorthe; Tayran, Hueseyin; Yilmaz, Elanur; Flaherty, Delaney; Turgutalp, Bengisu; Sukumar, Gauthaman; Alba, Camille; McGrath, Elisa Martinez; Hupalo, Daniel N.; Bacikova, Dagmar; Le Guen, Yann; Lantigua, Rafael; Medrano, Martin; Rivera, Diones; Recio, Patricia; Nuriel, Tal; Ertekin-Taner, Nilufer; Teich, Andrew F.; Dickson, Dennis W.; Holley, Scott; Greicius, Michael; Dalgard, Clifton L.; Zody, Michael; Mayeux, Richard; Kizil, Caghan; Vardarajan, Badri N.
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Molecular and Clinical Epidemiology of SARS-CoV-2 Infection among Vaccinated and Unvaccinated Individuals in a Large Healthcare Organization from New Jersey
errVIRUSES-BASEL
IF3.5
err2023-08-05
err4
errOAAI
errMediavilla, Jose R.; Lozy, Tara; Lee, Annie; Kim, Justine; Kan, Veronica W.; Titova, Elizabeth; Amin, Ashish; Zody, Michael C.; Corvelo, Andre; Oschwald, Dayna M.; Baldwin, Amy; Fennessey, Samantha; Zuckerman, Jerry M.; Kirn, Thomas; Chen, Liang; Zhao, Yanan; Chow, Kar Fai; Maniatis, Tom; Perlin, David S.; Kreiswirth, Barry N.
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errSave
Whole genome error-corrected sequencing for sensitive circulating tumor DNA cancer monitoring
errCANCER RESEARCH
IF16.6
err2023-04-04
err0
PREAI
errCheng, Alexandre P.; Widman, Adam J.; Arora, Anushri; Rusinek, Itai; Hooper, William F.; Murray, Rebecca; Halmos, Daniel; Langanay, Theophile; Inghirami, Giorgio; Germer, Soren; Marton, Melissa; Helland, Adrienne; Furatero, Rob; McClintock, Jaime; Winterkorn, Lara; Steinsnyder, Zoe; Wang, Yohyoh; Rajagopalan, Srinivas; Alimohamed, Asrar I.; Malbari, Murtaza S.; Saxena, Ashish; Callahan, Margaret K.; Frederick, Dennie T.; Spain, Lavinia; Jaimovich, Ariel; Lipson, Doron; Turajlic, Samra; Zody, Michael C.; Altorki, Nasser K.; Wolchok, Jedd D.; Postow, Michael A.; Robine, Nicolas; Boland, Genevieve; Landau, Dan A.
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errSave
Polyethnic-1000: A New York-based initiative to advance cancer genomics through recruitment of diverse racial & ethnic populations.
errCANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
IF3.4
err2023-01-01
err0
PREAI
errBalogun, Onyinye; Davis, Melissa; Mehallow, Michelle; Robine, Nicolas; Winterkorn, Lara; Oschwald, Dayna; Zody, Michael; Aparicio, Samuel; Maniatis, Tom; Varmus, Harold; Sawyers, Charles; Tuveson, David
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errSave
Genomic Epidemiology and Serology Associated with a SARS-CoV-2 R.1 Variant Outbreak in New Jersey
errMBIO
IF4.7
err2022-10-26
err4
errOAAI
errMathema, Barun; Chen, Liang; Wang, Pengfei; Cunningham, Marcus H.; Mediavilla, Jose R.; Chow, Kar Fai; Luo, Yang; Zhao, Yanan; Composto, Kaelea; Zuckerman, Jerry; Zody, Michael C.; Wilson, Nancy; Lee, Annie; Oschwald, Dayna M.; Liu, Lihong; Iketani, Sho; Germer, Soren; Fennessey, Samantha; Wang, Maple; Kramer, Yael; Toole, Patricia; Maniatis, Tom; Ho, David D.; Perlin, David S.; Kreiswirth, Barry N.
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errSave
Nasal airway transcriptome-wide association study of asthma reveals genetically driven mucus pathobiology (vol 3, 1632, 2022)
errNATURE COMMUNICATIONS
IF15.7
err2022-10-03
err0
errOAAI
errSajuthi, Satria P.; Everman, Jamie L.; Jackson, Nathan D.; Saef, Benjamin; Rios, Cydney L.; Moore, Camille M.; Mak, Angel C. Y.; Eng, Celeste; Fairbanks-Mahnke, Ana; Salazar, Sandra; Elhawary, Jennifer; Huntsman, Scott; Medina, Vivian; Nickerson, Deborah A.; Germer, Soren; Zody, Michael C.; Abecasis, Goncalo; Kang, Hyun Min; Rice, Kenneth M.; Kumar, Rajesh; Zaitlen, Noah A.; Oh, Sam; Rodriguez-Santana, Jose; Burchard, Esteban G.; Seibold, Max A.
errShare
errSave
Accounting for population structure in genetic studies of cystic fibrosis
errHUMAN GENETICS AND GENOMICS ADVANCES
IF3.6
err2022-07-01
err4
errOAAI
errKingston, Hanley; Stilp, Adrienne M.; Gordon, William; Broome, Jai; Gogarten, Stephanie M.; Ling, Hua; Barnard, John; Dugan-Perez, Shannon; Ellinor, Patrick T.; Gabriel, Stacey; Germer, Soren; Gibbs, Richard A.; Gupta, Namrata; Rice, Kenneth; Smith, Albert, V; Zody, Michael C.; Blackman, Scott M.; Cutting, Garry; Knowles, Michael R.; Zhou, Yi-Hui; Rosenfeld, Margaret; Gibson, Ronald L.; Bamshad, Michael; Fohner, Alison; Blue, Elizabeth E.
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errSave
Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes
errNATURE GENETICS
IF31.8
err2022-04-11
err86
errOAAI
errEbler, Jana; Ebert, Peter; Clarke, Wayne E.; Rausch, Tobias; Audano, Peter A.; Houwaart, Torsten; Mao, Yafei; Korbel, Jan O.; Eichler, Evan E.; Zody, Michael C.; Dilthey, Alexander T.; Marschall, Tobias
errShare
errSave

Research Directions

No research directions
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