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T

Travis J. Wheeler

university of arizona

23H-index
121Paper Count
7.0KCitation Count
Published Papers 18
Publication Date
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Rational reduction of a sorghum SynCom that preserves growth promotion reveals flavonoid-mediated plant–microbe interactions
errNew Phytologist
IF8.1
err2026-07-29
err0
errOAAI
errDean Pettinga; Citlali Fonseca-García; Genevieve Krause; Hannah Ploemacher; Travis Wheeler; Chaevien S. Clendinen; Pubudu Handakumbura; Robert Egbert; Devin Coleman-Derr
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MDCompress: better, faster compression of molecular dynamics simulation trajectories
errBioinformatics
IF5.4
err2026-04-10
err0
errOAAI
errMarek Kokot; Amitava Roy; Travis J Wheeler; Sebastian Deorowicz; null
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errSave
NEAR: neural embeddings for amino acid relationships
errBIOINFORMATICS
IF5.4
err2025-07-01
err0
errOAAI
errOlson, Daniel; Colligan, Thomas; Demekas, Daphne; Roddy, Jack W.; Youens-Clark, Ken; Wheeler, Travis J.
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errSave
Phenome-wide association of APOE alleles in the All of Us Research Program
erreBioMedicine
IF10.8
err2025-05-31
err0
errOAAI
errEhsan Khajouei; Valentina Ghisays; Ignazio S. Piras; Kiana L. Martinez; Anthony T. Vicenti; Marcus Naymik; Preston Ngo; Tam C. Tran; Joshua C. Denny; Travis J. Wheeler; Matthew J. Huentelman; Eric M. Reiman; Jason H. Karnes
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errSave
MDRepo-an open data warehouse for community-contributed molecular dynamics simulations of proteins
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-13
err0
errOAAI
errRoy, Amitava; Ward, Ethan; Choi, Illyoung; Cosi, Michele; Edgin, Tony; Hughes, Travis S.; Islam, Md Shafayet; Khan, Asif M.; Kolekar, Aakash; Rayl, Mariah; Robinson, Isaac; Sarando, Paul; Skidmore, Edwin; Swetnam, Tyson L.; Wall, Mariah; Xu, Zhuoyun; Yung, Michelle L.; Merchant, Nirav; Wheeler, Travis J.
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A unified framework to analyze transposable element insertion polymorphisms using graph genomes
errNATURE COMMUNICATIONS
IF15.7
err2024-10-16
err0
errOAAI
errGroza, Cristian; Chen, Xun; Wheeler, Travis J.; Bourque, Guillaume; Goubert, Clement
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errSave
Do Molecular Fingerprints Identify Diverse Active Drugs in Large-Scale Virtual Screening? (No)
errPHARMACEUTICALS
IF4.8
err2024-07-26
err2
errOAAI
errVenkatraman, Vishwesh; Gaiser, Jeremiah; Demekas, Daphne; Roy, Amitava; Xiong, Rui; Wheeler, Travis J.
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errSave
VIBES: a workflow for annotating and visualizing viral sequences integrated into bacterial genomes
errgenomics proteomics bioinformatics
IF2.8
err2024-04-04
err1
errOAAI
errCopeland, Conner J.; Roddy, Jack W.; Schmidt, Amelia K.; Secor, Patrick R.; Wheeler, Travis J.
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errSave
SODA: a TypeScript/JavaScript library for visualizing biological sequence annotation
errgenomics proteomics bioinformatics
IF2.8
err2022-10-06
err3
errOAAI
errRoddy, Jack W.; Lesica, George T.; Wheeler, Travis J.
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errSave
Accuracy of multiple sequence alignment methods in the reconstruction of transposable element families
errgenomics proteomics bioinformatics
IF2.8
err2022-05-17
err5
errOAAI
errHubley, Robert; Wheeler, Travis J.; Smit, Arian F. A.
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errSave
Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2020-02-21
err74
errOAAI
errSecor, Patrick R.; Burgener, Elizabeth B.; Kinnersley, M.; Jennings, Laura K.; Roman-Cruz, Valery; Popescu, Medeea; Van Belleghem, Jonas D.; Haddock, Naomi; Copeland, Conner; Michaels, Lia A.; de Vries, Christiaan R.; Chen, Qingquan; Pourtois, Julie; Wheeler, Travis J.; Milla, Carlos E.; Bollyky, Paul L.
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errSave
15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms
errNUCLEIC ACIDS RESEARCH
IF13.1
err2018-11-16
err212
errOAAI
errHornbeck, Peter V.; Kornhauser, Jon M.; Latham, Vaughan; Murray, Beth; Nandhikonda, Vidhisha; Nord, Alex; Skrzypek, Elzbieta; Wheeler, Travis; Zhang, Bin; Gnad, Florian
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errSave
Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks
errSCIENCE SIGNALING
IF6.6
err2018-05-22
err51
errOAAI
errGrimes, Mark; Hall, Benjamin; Foltz, Lauren; Levy, Tyler; Rikova, Klarisa; Gaiser, Jeremiah; Cook, William; Smirnova, Ekaterina; Wheeler, Travis; Clark, Neil R.; Lachmann, Alexander; Zhang, Bin; Hornbeck, Peter; Ma'ayan, Avi; Comb, Michael
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The Dfam database of repetitive DNA families
errNUCLEIC ACIDS RESEARCH
IF13.1
err2015-11-26
err467
errOAAI
errHubley, Robert; Finn, Robert D.; Clements, Jody; Eddy, Sean R.; Jones, Thomas A.; Bao, Weidong; Smit, Arian F. A.; Wheelers, Travis J.
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errSave
HMMER web server: 2015 update
errNUCLEIC ACIDS RESEARCH
IF13.1
err2015-05-05
err758
errOAAI
errFinn, Robert D.; Clements, Jody; Arndt, William; Miller, Benjamin L.; Wheeler, Travis J.; Schreiber, Fabian; Bateman, Alex; Eddy, Sean R.
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errSave
Dfam: a database of repetitive DNA based on profile hidden Markov models
errNUCLEIC ACIDS RESEARCH
IF13.1
err2012-11-30
err235
errOAAI
errWheeler, Travis J.; Clements, Jody; Eddy, Sean R.; Hubley, Robert; Jones, Thomas A.; Jurka, Jerzy; Smit, Arian F. A.; Finn, Robert D.
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errSave
Complete Nucleomorph Genome Sequence of the Nonphotosynthetic Alga Cryptomonas paramecium Reveals a Core Nucleomorph Gene Set
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2010-12-08
err54
errOAAI
errTanifuji, Goro; Onodera, Naoko T.; Wheeler, Travis J.; Dlutek, Marlena; Donaher, Natalie; Archibald, John M.
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errSave
Adaptive protein evolution and regulatory divergence in Drosophila
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2006-03-14
err25
errOAAI
errGood, Jeffrey M.; Hayden, Celine A.; Wheeler, Travis J.
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Research Directions

No research directions
Co-authors
Cooperation Journals
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Joshua C. Denny
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Alex Bateman
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S
Sean R. Eddy
H-index: 90 · Papers: 200
G
Guillaume Bourque
H-index: 86 · Papers: 426
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