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SaveShare Save Share Save The STRING database in 2025: protein networks with directionality of regulation
Szklarczyk, Damian; Nastou, Katerina; Koutrouli, Mikaela; Kirsch, Rebecca; Mehryary, Farrokh; Hachilif, Radja; Hu, Dewei; Peluso, Matteo E.; Huang, Qingyao; Fang, Tao; Doncheva, Nadezhda T.; Pyysalo, Sampo; Bork, Peer; Jensen, Lars J.; von Mering, Christian Share Save Share Save The SIB Swiss Institute of Bioinformatics Semantic Web of dataAltenhoff, Adrian; Bairoch, Amos; Bansal, Parit; Baratin, Delphine; Bastian, Frederic; Bolleman, Jerven; Bridge, Alan; Burdet, Frederic; Crameri, Katrin; Dauvillier, Jerome; Dessimoz, Christophe; Gehant, Sebastien; Glover, Natasha; Gnodtke, Kristin; Hayes, Catherine; Ibberson, Mark; Kriventseva, Evgenia; Kuznetsov, Dmitry; Lisacek, Frederique; Mehl, Florence; de Farias, Tarcisio Mendes; Michel, Pierre-Andre; Moretti, Sebastien; Morgat, Anne; Osterle, Sabine; Pagni, Marco; Redaschi, Nicole; Robinson-Rechavi, Marc; Samarasinghe, Kasun; Sima, Ana-Claudia; Szklarczyk, Damian; Topalov, Orlin; Toure, Vasundra; Unni, Deepak; von Mering, Christian; Wollbrett, Julien; Zahn-Zabal, Monique; Zdobnov, Evgeny Share Save Share Save proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomesFullam, Anthony; Letunic, Ivica; Schmidt, Thomas S. B.; Ducarmon, Quinten R.; Karcher, Nicolai; Khedkar, Supriya; Kuhn, Michael; Larralde, Martin; Maistrenko, Oleksandr M.; Malfertheiner, Lukas; Milanese, Alessio; Rodrigues, Joao Frederico Matias; Sanchis-Lopez, Claudia; Schudoma, Christian; Szklarczyk, Damian; Sunagawa, Shinichi; Zeller, Georg; Huerta-Cepas, Jaime; von Mering, Christian; Bork, Peer; Mende, Daniel R. Share Save eggNOG 6.0: enabling comparative genomics across 12 535 organismsHernandez-Plaza, Ana; Szklarczyk, Damian; Botas, Jorge; Cantalapiedra, Carlos P.; Giner-Lamia, Joaquin; Mende, Daniel R.; Kirsch, Rebecca; Rattei, Thomas; Letunic, Ivica; Jensen, Lars J.; Bork, Peer; von Mering, Christian; Huerta-Cepas, Jaime Share Save The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interestSzklarczyk, Damian; Kirsch, Rebecca; Koutrouli, Mikaela; Nastou, Katerina; Mehryary, Farrokh; Hachilif, Radja; Gable, Annika L.; Fang, Tao; Doncheva, Nadezhda T.; Pyysalo, Sampo; Bork, Peer; Jensen, Lars J.; von Mering, Christian Share Save Share Save The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets (vol 49, pg D605, 2021)Szklarczyk, Damian; Gable, Annika L.; Nastou, Katerina C.; Lyon, David; Kirsch, Rebecca; Pyysalo, Sampo; Doncheva, Nadezhda T.; Legeay, Marc; Fang, Tao; Bork, Peer; Jensen, Lars J.; von Mering, Christian Share Save Share Save The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement setsSzklarczyk, Damian; Gable, Annika L.; Nastou, Katerina C.; Lyon, David; Kirsch, Rebecca; Pyysalo, Sampo; Doncheva, Nadezhda T.; Legeay, Marc; Fang, Tao; Bork, Peer; Jensen, Lars J.; von Mering, Christian Share Save Share Save The Quest for Orthologs benchmark service and consensus calls in 2020Altenhoff, Adrian M.; Garrayo-Ventas, Javier; Cosentino, Salvatore; Emms, David; Glover, Natasha M.; Hernandez-Plaza, Ana; Nevers, Yannis; Sundesha, Vicky; Szklarczyk, Damian; Fernandez, Jose M.; Codo, Laia; Li Gelpi, Josep; Huerta-Cepas, Jaime; Iwasaki, Wataru; Kelly, Steven; Lecompte, Odile; Muffato, Matthieu; Martin, Maria J.; Capella-Gutierrez, Salvador; Thomas, Paul D.; Sonnhammer, Erik; Dessimoz, Christophe Share Save Share Save STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasetsSzklarczyk, Damian; Gable, Annika L.; Lyon, David; Junge, Alexander; Wyder, Stefan; Huerta-Cepas, Jaime; Simonovic, Milan; Doncheva, Nadezhda T.; Morris, John H.; Bork, Peer; Jensen, Lars J.; Mering, Christianvon Share Save eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 virusesHuerta-Cepas, Jaime; Szklarczyk, Damian; Heller, Davide; Hernandez-Plaza, Ana; Forslund, Sofia K.; Cook, Helen; Mende, Daniel R.; Letunic, Ivica; Rattei, Thomas; Jensen, Lars J.; von Mering, Christian; Bork, Peer Share Save Share Save 
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