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Thomas Walsh

csiro

21H-index
56Paper Count
5.0KCitation Count
Published Papers 15
Publication Date
The genomes of the blacklip rock oyster (Saccostrea echinata) and the natal rock oyster (Saccostrea cucullata) reveal adaptions to thermally challenging environments
err2026-04-02
err0
PREAI
errSharon E. Hook; Khandaker Asif Ahmed; Demi Cho; Leon Court; Ryan J. Farr; Aisling Fontanini; Alistair J. Hobday; Gunjan Pandey; Rahul V. Rane; Jenny Su; Thomas Walsh
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Ensembl 2026
err2025-11-01
err3
errOAAI
errYates, Andrew D.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Branco Lins, Paulo R.; Brooks, Lucy; Budhanuru Ramaraju, Shashank; Campbell, Lahcen, I; Carbajo Martinez, Manuel; Carpenter, Jack; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Dickson, Suzanna; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fairbrother-Browne, Aine; Falola, Oluwadamilare; Fatima, Reham; Gonzalez Martinez, Jose; Gurbich, Tatiana; Hall, Holly; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaikala, Vinay; Lazar, Anna; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela A.; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Nakib Hossain, Syed; Perez-Silva, Jose G.; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Suner, Marie-Marthe; Surapaneni, Likhitha; Tierney, Jack A. S.; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Allen, Jamie M.; Alvarez-Jarreta, Jorge; Cheema, Jitender; Batista da Rocha, Jorge; De silva, Nishadi H.; Tricomi, Francesca Floriana; Giorgetti, Stefano; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Willhoft, Natalie L.; Winterbottom, Andrea; Flint, Bethany R.; Frankish, Adam; Haggerty, Leanne; Hunt, Sarah E.; Clark, Emily L.; Dyer, Sarah C.; Freeberg, Mallory A.; Martin, Fergal J.; Finn, Robert D.
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New developments for the Quest for Orthologs benchmark service
err2024-12-11
err0
errOAAI
errAltenhoff, Adrian; Nevers, Yannis; Tran, Vinh; Jyothi, Dushyanth; Martin, Maria; Cosentino, Salvatore; Majidian, Sina; Marcet-Houben, Marina; Fuentes-Palacios, Diego; Persson, Emma; Walsh, Thomas; Lecompte, Odile; Gabaldon, Toni; Kelly, Steven; Hu, Yanhui; Iwasaki, Wataru; Capella-Gutierrez, Salvador; Dessimoz, Christophe; Thomas, Paul D.; Ebersberger, Ingo; Sonnhammer, Erik
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Ensembl 2025
err2024-12-04
err1
errOAAI
errDyer, Sarah C.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Beracochea, Martin; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Denni, Sukanya; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Falola, Oluwadamilare; Fatima, Reham; Genez, Thiago; Martinez, Jose Gonzalez; Gurbich, Tatiana; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela Alejandra; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Perez-Silva, Jose G.; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Tsang, Ian; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Cheema, Jitender; da Rocha, Jorge Batista; De Silva, Nishadi H.; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; Finn, Robert D.; Freeberg, Mallory A.; Harrison, Peter W.; Martin, Fergal J.; Yates, Andrew D.
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Ensembl 2024
err2023-11-11
err83
errOAAI
errHarrison, Peter W.; Amode, M. Ridwan; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Chougule, Kapeel; Cockburn, Alexander; Davidson, Claire; De Silva, Nishadi H.; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Grigoriadis, Dionysios; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Gurbich, Tatiana A.; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Lodha, Disha; Marques-Coelho, Diego; Maslen, Gareth; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Stark, William; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Ware, Doreen; Wass, Elizabeth; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Martin, Fergal J.; Yates, Andrew D.
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Ensembl 2023
err2022-11-01
err378
errOAAI
errMartin, Fergal J.; Amode, M. Ridwan; Aneja, Alisha; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Bignell, Alexandra; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Charkhchi, Mehrnaz; Cockburn, Alexander; Fiorretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Guijarro, Cristi; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Marques-Coelho, Diego; Marugan, Jose Carlos; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraiva-Agostinho, Nuno; Schuilenburg, Helen; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Stark, William; Steed, Emily; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Szpak, Michal; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Wass, Elizabeth; Willhoft, Natalie; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Tate, John; Thybert, David; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Ruffier, Magali; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Howe, Kevin L.; Harrison, Peter W.; Yates, Andrew D.; Flicek, Paul
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Ensembl 2022
err2021-11-17
err1.1K
errOAAI
errCunningham, Fiona; Allen, James E.; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bignell, Alexandra; Billis, Konstantinos; Boddu, Sanjay; Brooks, Lucy; Charkhchi, Mehrnaz; Cummins, Carla; Fioretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Martinez, Jose Gonzalez; Guijarro-Clarke, Cristina; Gymer, Arthur; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Juettemann, Thomas; Kaikala, Vinay; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Marugan, Jose Carlos; Mohanan, Shamika; Mushtaq, Aleena; Naven, Marc; Ogeh, Denye N.; Parker, Anne; Parton, Andrew; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Sakthivel, Manoj Pandian; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Perez-Silva, Jose G.; Stark, William; Steed, Emily; Sutinen, Kyosti; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Szpak, Michal; Thormann, Anja; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Willhoft, Natalie; Winterbottom, Andrea; Wass, Elizabeth; Chakiachvili, Marc; Flint, Bethany; Frankish, Adam; Giorgetti, Stefano; Haggerty, Leanne; Hunt, Sarah E.; IIsley, Garth R.; Loveland, Jane E.; Martin, Fergal J.; Moore, Benjamin; Mudge, Jonathan M.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Tate, John; Thybert, David; Trevanion, Stephen J.; Dyer, Sarah; Harrison, Peter W.; Howe, Kevin L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, Paul
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Restoring fertility in yeast hybrids: Breeding and quantitative genetics of beneficial traits
err2021-09-13
err20
errOAAI
errNaseeb, Samina; Visinoni, Federico; Hu, Yue; Roberts, Alex J. Hinks; Maslowska, Agnieszka; Walsh, Thomas; Smart, Katherine A.; Louis, Edward J.; Delneri, Daniela
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The clinical importance of tandem exon duplication-derived substitutions
err2021-07-24
err10
errOAAI
errGomez, Laura Martinez; Pozo, Fernando; Walsh, Thomas A.; Abascal, Federico; Tress, Michael L.
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Assessing the functional relevance of splice isoforms
err2021-05-22
err29
errOAAI
errPozo, Fernando; Martinez-Gomez, Laura; Walsh, Thomas A.; Rodriguez, Jose Manuel; Di Domenico, Tomas; Abascal, Federico; Vazquez, Jesus; Tress, Michael L.
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PHENOS: a high-throughput and flexible tool for microorganism growth phenotyping on solid media
err2018-01-24
err13
errOAAI
errBarton, David B. H.; Georghiou, Danae; Dave, Neelam; Alghamdi, Majed; Walsh, Thomas A.; Louis, Edward J.; Foster, Steven S.
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VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
err2017-06-05
err15
PREAI
errWebb, Andrew E.; Walsh, Thomas A.; O'Connell, Mary J.
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Adaptive Evolution as a Predictor of Species-Specific Innate Immune Response
err2015-03-10
err30
errOAAI
errWebb, Andrew E.; Gerek, Z. Nevin; Morgan, Claire C.; Walsh, Thomas A.; Loscher, Christine E.; Edwards, Scott V.; O'Connell, Mary J.
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Simultaneous miRNA and mRNA transcriptome profiling of human myoblasts reveals a novel set of myogenic differentiation-associated miRNAs and their target genes
err2013-04-18
err83
errOAAI
errDmitriev, Petr; Barat, Ana; Polesskaya, Anna; O'Connell, Mary J.; Robert, Thomas; Dessen, Philippe; Walsh, Thomas A.; Lazar, Vladimir; Turki, Ahmed; Carnac, Gilles; Laoudj-Chenivesse, Dalila; Lipinski, Marc; Vassetzky, Yegor S.
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Laboratory assessment of iron status in pregnancy
err2011-06-01
err33
PREAI
errWalsh, Thomas; O'Broin, Sean D.; Cooley, Sharon; Donnelly, Jennifer; Kennedy, John; Harrison, Robert F.; McMahon, Corinna; Geary, Michael
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