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Alexey I. Nesvizhskii

university of michigan

91H-index
445Paper Count
5.0WCitation Count
Published Papers 199
Publication Date
Spatial distribution of the proteome in the human body and in cancers
errNature
IF48.5
err2026-06-17
err0
errOAAI
errLiang Yue; Wenhao Jiang; Sainan Li; Meng Luo; Ning Fan; Xiaolu Zhan; Rui Sun; Honghan Cheng; Zhangzhi Xue; Tong Liu; Qianhe Zhou; Kexin Chen; Tian Lu; Fang Guo; Dongwei Li; Weigang Ge; Zongxiang Nie; Mengge Lyu; Jun A; Yingrui Wang; Yingdan Chen; Zhenhai Fu; Nan Xiang; Lu Li; Fengchao Yu; Guo Ci Teo; Alexey I. Nesvizhskii; Meng Wang; Michael P. Snyder; Ben C. Collins; Qi Xiao; Ruedi Aebersold; Fei Xu; Hui Yang; Sijia Zhang; Yi Han; Yi Zhu; Yong Ji; Yan Li; Tiannan Guo
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Integrated proteogenomic and metabolomic profiling of acute myeloid leukemias to identify molecular subtypes and associated therapy targets
err2026-06-12
err0
errOAAI
errShih-Chun A. Chu; Yi Hsiao; Chenwei Wang; Jennifer E. Kyle; Raghav Jain; Yamei Deng; Marina A. Gritsenko; Leanne E. Henry; Jonathan T. Lei; Yongchao Dou; Bahar Tercan; Zhiao Shi; Mahnoor N. Gondal; Chia-Feng Tsai; John M. Elizarraras; Rosalie K. Chu; Fengchao Yu; Sunil K. Joshi; Xiaojun Jing; Daniel A. Polasky; Karl K. Weitz; Ginny Xiaohe Li; Vanessa L. Paurus; Chaevien S. Clendinen; Athena A. Schepmoes; Priscila M. Lalli; Josie G. Eder; Javier E. Flores; Kelly G. Stratton; James C. Pino; Camilo Posso; Vladislav A. Petyuk; Tyler J. Sagendorf; Yuanwei Xu; Omar M. Ibrahim; Ronald J. Moore; Rui Zhao; Jin Chen; Matthew E. Monroe; Mathangi Thiagarajan; Galen Hostetter; Chelsea Newton; Eunkyung An; Ana I. Robles; Xu Zhang; Nathan J. Edwards; Yin Lu; Hui Zhang; Haitham Abdelhakim; Paul D. Piehowski; Mehdi Mesri; Richard D. Smith; Chandan Kumar-Sinha; Cristina E. Tognon; Jennifer Dunlap; Elie Traer; Li Ding; Jeffrey W. Tyner; Arul M. Chinnaiyan; Gilbert S. Omenn; Karin D. Rodland; Saravana M. Dhanasekaran; Sara J. C. Gosline; Alexey I. Nesvizhiskii; Bing Zhang; Tao Liu; Marcin P. Cieslik
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Small-molecule binding-site discovery using silyl ether-enabled chemoproteomics
err2026-04-27
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errOAAI
errChau Ngo; Sho Takechi; Aditya Sivakumar; Miranda Villanueva; Fengchao Yu; Andréa B. Ball; Javier Rubio; Elijah Biletch; Nikolas R. Burton; Lisa M. Boatner; Phillip Kim; Alexandra C. Turmon; Nithesh Perumal; Marc Liesa; Ajit S. Divakaruni; Alexey I. Nesvizhskii; Keriann M. Backus
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Integration of alternative fragmentation techniques into standard LC-MS workflows using a single deep learning model enhances proteome coverage
err2026-03-23
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errOAAI
errNikita Levin; Cemil Can Saylan; Joel Lapin; Yana Demyanenko; Kevin L. Yang; John Sidda; Alexey I. Nesvizhskii; Mathias Wilhelm; Shabaz Mohammed
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Analysis of isobaric quantitative proteomic data using TMT-Integrator and FragPipe computational platform
err2026-03-02
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errOAAI
errHui-Yin Chang; Yamei Deng; Ruohong Li; Dmitry Avtonomov; Bo Wen; Sarah E. Haynes; Felipe da Veiga Leprevost; Bing Zhang; Fengchao Yu; Alexey I. Nesvizhskii
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Sensitive detection of cancer antigens enabled by user-defined peptide libraries
err2026-02-09
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PREAI
errKasidet Manakongtreecheep; Claudia Ctortecka; Luis O. Correa-Medero; Timothy Zhu; Isabelle Lippincott; Griffin M. Lawrence; Alexis Howard; Gabrielle M. Hernandez; Cleo Forman; Emma C. Duggan; Marta A. Wilbrink; Eva K. Verzani; Alexander B. Afeyan; Jiaxun Li; Alexey I. Nesvizhskii; Giacomo Oliveira; Derin B. Keskin; Patrick A. Ott; Karl R. Clauser; Matthew Bakalar; Siranush Sarkizova; Nir Hacohen; Steven A. Carr; Jennifer G. Abelin; Catherine J. Wu
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Spatial control of Keratin 8 phosphorylation by Aurora B facilitates cytokinesis in cancer cells of epithelial origin
err2026-02-02
err0
PREAI
errBusra Harmanda; Halenur Ayaydin; Xenia Waide; Mohammad H. Qureshi; Venkatesha Basrur; Alexey I. Nesvizhskii; Timothy J. Mitchison; Nurhan Ozlu
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The hematopoietic stem cell MYB enhancer is essential for and recurrently amplified during Tcell leukemogenesis
err2026-01-02
err0
errOAAI
errMullin, Carea; Lin, Karena; Choe, Elizabeth; Sha, Cher; Shukla, Zeel; Campbell, Koral; McCarter, Anna C.; Wang, Annie; Nieves-Salva, Jannaldo; Khan, Sarah; Keeley, Theresa M.; Liang, Shannon; Wang, Qing; Melnick, Ashley F.; Evans, Pearl; Monovich, Alexander C.; Iyer, Ashwin; Kodgule, Rohan; Deng, Yamei; Leprevost, Felipe Da Veiga; Barnett, Kelly R.; Polonen, Petri; Khoriaty, Rami; Savic, Daniel; Teachey, David T.; Mullighan, Charles G.; Cieslik, Marcin; Nesvizhskii, Alexey I.; Samuelson, Linda C.; Jones, Morgan; Li, Qing; Ryan, Russell J. H.; Chiang, Mark Y.
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Profiling the proteome-wide selectivity of diverse electrophiles
err2025-10-30
err0
errOAAI
errPatrick R. A. Zanon; Fengchao Yu; Patricia Z. Musacchio; Lisa Lewald; Michael Zollo; Kristina Krauskopf; Dario Mrdović; Patrick Raunft; Thomas E. Maher; Marko Cigler; Christopher J. Chang; Kathrin Lang; F. Dean Toste; Alexey I. Nesvizhskii; Stephan M. Hacker
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TRAF6 integrates innate immune signals to regulate glucose homeostasis via Parkin-dependent and Parkin-independent mitophagy
err2025-10-08
err0
PREAI
errElena Levi-D’Ancona; Emily M. Walker; Jie Zhu; Yamei Deng; Vaibhav Sidarala; Ava M. Stendahl; Emma C. Reck; Belle A. Henry-Kanarek; Anne C. Lietzke; Biaoxin Chai; Mabelle B. Pasmooij; Dre L. Hubers; Venkatesha Basrur; Sankar Ghosh; Linsey Stiles; Alexey I. Nesvizhskii; Orian S. Shirihai; Scott A. Soleimanpour
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Breaking Boundaries in Histone Modification MS-based Detection: A Tailored Search Strategy for Unrestricted identification of novel epigenetic marks
err2025-09-30
err0
errOAAI
errAlessandro Vai; Roberta Noberini; Andrea Graziadei; Daniel A. Polasky; Fengchao Yu; Alexey I. Nesvizhskii; Tiziana Bonaldi
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Integrative analysis of lung adenocarcinoma across diverse ethnicities and exposures
err2025-07-31
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errOAAI
errShankha Satpathy; Natalie M. Clark; Yi-Ju Chen; Noshad Hosseini; Ya-Hsuan Chang; Yi Hsiao; Jonathan T. Lei; Francesca Petralia; Jin-Shing Chen; Yifat Geffen; David I. Heiman; Indranil Paul; Hanbyul Cho; Michelle Hollenberg; Giacomo B. Marino; Kuen-Tyng Lin; Rahul Mannan; C. Jackson White; Joe Allen; Shayan C. Avanessian; M. Harry Kane; Ashley Wolfe; Miloni Kinarivala; Wenke Liu; Shankara Anand; Mong-Wei Lin; Moe Haines; Erik J. Bergstrom; Grant Hussey; Ginny Xiaohe Li; Deepak C. Mani; Hao Fang; Eric J. Jaehnig; Hasmik Keshishian; Brecca Miller; Kang-Yi Su; Yi-Jing Hsiao; Hsao-Hsun Hsu; Min-Shu Hsieh; Kuo-Hsuan Hsu; Alexi Monovoukas; Simone Gohsman; John R. Thorup; Yamei Deng; Yo Akiyama; Eden Deng; Eric Sheng-Wen Chen; Azra Krek; Rodrigo Espinoza; Weiping Ma; Daniel Charytonowicz; Robert Sebra; Jyun-Hong Lin; Yan-Si Chen; Yin-Chen Hsu; Ze-Shiang Lin; Kun-Chieh Chen; Chang-Wei Yeh; Yu-Tai Wang; Alexander J. Lazar; Mehdi Mesri; Eunkyung An; Xu Zhang; Karl R. Clauser; David Fenyö; Arul M. Chinnaiyan; Bing Zhang; Li Ding; Kelly Ruggles; Chelsea Newton; Hui Zhang; Pei Wang; Galen Hostetter; Gilbert S. Omenn; Chandan Kumar-Sinha; Mathangi Thiagarajan; Ramaswamy Govindan; Paul Paik; Abhijit Parolia; Qing K. Li; Avi Ma’ayan; Gad A. Getz; Saravana M. Dhanasekaran; Ana I. Robles; Gee-Chen Chang; Pan-Chyr Yang; Sung-Liang Yu; Hsuan-Yu Chen; Alexey I. Nesvizhskii; Steven A. Carr; D.R. Mani; Marcin P. Cieslik; Yu-Ju Chen; Michael A. Gillette
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LONP1 regulation of mitochondrial protein folding provides insight into beta cell failure in type 2 diabetes
err2025-07-21
err0
errOAAI
errJin Li; Yamei Deng; Marie Gasser; Jie Zhu; Emily M. Walker; Vaibhav Sidarala; Emma C. Reck; Dre L. Hubers; Mabelle B. Pasmooij; Chun-Shik Shin; Khushdeep Bandesh; Eftyhmios Motakis; Siddhi Nargund; Romy Kursawe; Venkatesha Basrur; Alexey I. Nesvizhskii; Michael L. Stitzel; David C. Chan; Guy A. Rutter; Scott A. Soleimanpour
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SynchroSep-MS: Parallel LC Separations for Multiplexed Proteomics
err2025-07-01
err0
PREAI
errLancaster, Noah M.; Chen, Li-Yu; Zhao, Bingnan; Anderson, Benton J.; Probasco, Mitchell D.; Demichev, Vadim; Polasky, Daniel A.; Nesvizhskii, Alexey I.; Overmyer, Katherine A.; Quarmby, Scott T.; Coon, Joshua J.
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Benchmarking SILAC Proteomics Workflows and Data Analysis Platforms
err2025-06-01
err0
errOAAI
errAshley M. Frankenfield; Kevin L. Yang; Wan Nur Atiqah binti Mazli; Jamison Shih; Fengchao Yu; Edwin Lo; Alexey I. Nesvizhskii; Ling Hao
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Design of Potent Small-Molecule Stimulator of Interferon Gene Inhibitor and Stimulator of Interferon Gene Mutant-Specific Degrader
err2025-05-19
err0
PREAI
errZhao, Hong-Yi; Zhang, Luchen; Liu, Zhongwei; He, Miao; Wang, Meilin; Li, Qiuxia; Sarkari, Farzad; Tao, Jinsong; Wen, Bo; Basrur, Venkatesha; Myatt, Hannah; Nesvizhskii, Alexey; Sun, Duxin
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Proteomic-based stemness score measures oncogenic dedifferentiation and enables the identification of druggable targets
err2025-04-17
err0
errOAAI
errIga Kołodziejczak-Guglas; Renan L.S. Simões; Emerson de Souza Santos; Elizabeth G. Demicco; Rossana N. Lazcano Segura; Weiping Ma; Pei Wang; Yifat Geffen; Erik Storrs; Francesca Petralia; Antonio Colaprico; Felipe da Veiga Leprevost; Pietro Pugliese; Michele Ceccarelli; Houtan Noushmehr; Alexey I. Nesvizhskii; Bożena Kamińska; Waldemar Priebe; Jan Lubiński; Bing Zhang; Maciej Wiznerowicz
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Identification of multiple novel procoagulant plasma ligands for stabilin-2
err2025-02-01
err0
PREAI
errUnderwood, Mary; Leprevost, Felipe Da Veiga; Basrur, Venkatesha; Nesvizhskii, Alexey I.; Rawley, Orla; Emmer, Brian; Lillicrap, David
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Light-Activated Reactivity of Nitrones with Amino Acids and Proteins
err2024-11-22
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errOAAI
errSkakuj, Kacper; Iglhaut, Maximilian; Shao, Qian; Garcia, Francisco J.; Huang, Bo-Yang; Brittain, Scott M.; Nesvizhskii, Alexey I.; Schirle, Markus; Nomura, Daniel K.; Toste, F. Dean
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ETSI Recruits the Canonical Baf Complex to Reactivate the Hematopoietic Stem Cell MYB Enhancer in the T-Cell Leukemia Context
errBLOOD
IF23.1
err2024-11-05
err0
PREAI
errMullin, Carea; Lin, Karena Hsijan; Mccarter, Anna; Choe, Elizabeth; Liang, Shannon; Wang, Qing; Melnick, Ashley; Shukla, Zeel; Sha, Cher; Iyer, Ashwin; Kodgule, Rohan; Deng, Yamei; Leprevost, Felipe; Barnett, Kelly R.; Savic, Daniel; Nesvizhskii, Alexey; Ryan, Russell J. H.; Chiang, Mark
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