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Sierra Moxon

united states department of energy (doe)

19H-index
51Paper Count
6.9KCitation Count
Published Papers 17
Publication Date
Ecolink: Towards a Knowledge Graph Schema for Complex Environmental Systems
err2026-01-01
err1
PREAI
errAlamenciak, Tim; Arnillas, Carlos Alberto; Caufield, Harry; Compton, Katherine; Drew, Kian; Fruhstuckl, Robert; Heger, Tina; Koenig-Ries, Birgitta; Mungall, Chris; Moxon, Sierra; Reese, Justin; Tardif, Jordan; Vogt, Lars
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LinkML: an open data modeling framework
err2026-01-01
err0
PREAI
errMoxon, Sierra A. T.; Solbrig, Harold; Harris, Nomi L.; Kalita, Patrick; Miller, Mark A.; Patil, Sujay; Schaper, Kevin; Bizon, Chris; Caufield, J. Harry; Cuesta, Silvano Cirujano; Cox, Corey; Dekervel, Frank; Dooley, Damion M.; Duncan, William D.; Fliss, Tim; Gehrke, Sarah; Graefe, Adam S. L.; Hegde, Harshad; Ireland, A. J.; Jacobsen, Julius O. B.; Krishnamurthy, Madan; Kroll, Carlo; Linke, David; Ly, Ryan; Matentzoglu, Nicolas; Overton, James A.; Saunders, Jonny L.; Unni, Deepak R.; Vaidya, Gaurav; Vierdag, Wouter-Michiel A. M.; Ruebel, Oliver; Chute, Christopher G.; Brush, Matthew H.; Haendel, Melissa A.; Mungall, Christopher J.
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The Gene Ontology knowledgebase in 2026
err2025-12-01
err1
PREAI
errAleksander, Suzi A.; Balhoff, James P.; Carbon, Seth; Cherry, J. Michael; Ebert, Dustin; Feuermann, Marc; Gaudet, Pascale; Harris, Nomi L.; Hill, David P.; Kalita, Patrick; Lee, Raymond; Mi, Huaiyu; Moxon, Sierra; Mungall, Christopher J.; Muruganujan, Anushya; Mushayahama, Tremayne; Sternberg, Paul W.; Thomas, Paul D.; Van Auken, Kimberly; Wong, Edith D.; Wood, Valerie; Ramsey, Jolene; Siegele, Deborah A.; Chisholm, Rex L.; Dodson, Robert; Fey, Petra; Aspromonte, Maria Cristina; Nugnes, Maria Victoria; Naser, Ximena Aixa Castro; Tosatto, Silvio C. E.; Giglio, Michelle; Nadendla, Suvarna; Antonazzo, Giulia; Attrill, Helen; Brown, Nicholas H.; Dos Santos, Gil; Marygold, Steven; Roper, Katja; Strelets, Victor; Tabone, Christopher J.; Thurmond, Jim; Zhou, Pinglei; Zaru, Rossana; Lovering, Ruth C.; Logie, Colin; Chen, Daqing; Naba, Alexandra; Christie, Karen; Corbani, Lori; Ni, Li; Sitnikov, Dmitry; Smith, Cynthia; Seager, James; Cooper, Laurel; Elser, Justin; Jaiswal, Pankaj; Gupta, Parul; Naithani, Sushma; Carme, Pascal; Rutherford, Kim; De Pons, Jeffrey L.; Dwinell, Melinda R.; Hayman, G. Thomas; Kaldunski, Mary L.; Kwitek, Anne E.; Laulederkind, Stanley J. F.; Tutaj, Marek A.; Vedi, Mahima; Wang, Shur-Jen; D'eustachio, Peter; Aimo, Lucila; Axelsen, Kristian; Bridge, Alan; Hyka-Nouspikel, Nevila; Morgat, Anne; Goldbold, Gene; Engel, Stacia R.; Miyasato, Stuart R.; Nash, Robert S.; Sherlock, Gavin; Weng, Shuai; Bakker, Erika; Berardini, Tanya Z.; Reiser, Leonore; Auchincloss, Andrea; Argoud-Puy, Ghislaine; Blatter, Marie-Claude; Boutet, Emmanuel; Breuza, Lionel; Casals-Casas, Cristina; Coudert, Elisabeth; Estreicher, Anne; Famiglietti, Maria Livia; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hulo, Chantal; Jungo, Florence; Mercier, Philippe Le; Lieberherr, Damien; Masson, Patrick; Pedruzzi, Ivo; Pourcel, Lucille; Poux, Sylvain; Rivoire, Catherine; Sundaram, Shyamala; Bateman, Alex; Adesina, Aduragbemi; Bowler-Barnett, Emily; Carpentier, David; Denny, Paul; Ignatchenko, Alexandr; Ishtiaq, Rizwan; Lock, Antonia; Lussi, Yvonne; Magrane, Michele; Martin, Maria J.; Orchard, Sandra; Raposo, Pedro; Speretta, Elena; Tyagi, Nidhi; Urakova, Nadya; Warner, Kate; Yu, Conny Wing-Hen; Chan, Juancarlos; Diamantakis, Stavros; Quinton-Tulloch, Mark; Raciti, Daniela; Fisher, Malcolm; James-Zorn, Christina; Ponferrada, Virgilio; Zorn, Aaron; Howe, Doug; Ramachandran, Sridhar; Ruzicka, Leyla; Westerfield, Monte
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Announcing the Biomedical Data Translator: Initial Public Release
err2025-07-09
err0
errOAAI
errKaramarie Fecho; Gwênlyn Glusman; Sergio E. Baranzini; Chris Bizon; Matthew Brush; William Byrd; Lawrence Chung; Andrew Crouse; Eric Deutsch; Michel Dumontier; Aleksandra Foksinska; Jennifer Hadlock; Kaiwen He; Sui Huang; Robert Hubal; Gregory M. Hyde; Sharat Israni; Kelyne Kenmogne; David Koslicki; Jana Dorfman Marcette; Ewy A. Mathe; Abrar Mesbah; Sierra A. T. Moxon; Christopher J. Mungall; John Osborne; Carrie Pasfield; Guangrong Qin; Stephen A. Ramsey; Justin Reese; Jared C. Roach; Reese Rose; Karthik Soman; Andrew I. Su; Casey Ta; Gaurav Vaidya; Rosina Weber; Qi Wei; Mark Williams; Chunlei Wu; Colleen Xu; Chase Yakaboski; The Biomedical Data Translator Consortium
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Updates to the Alliance of Genome Resources central infrastructure
err2024-03-29
err15
errOAAI
errAleksander, Suzanne A.; Anagnostopoulos, Anna V.; Antonazzo, Giulia; Arnaboldi, Valerio; Attrill, Helen; Becerra, Andres; Bello, Susan M.; Blodgett, Olin; Bradford, Yvonne M.; Bult, Carol J.; Cain, Scott; Calvi, Brian R.; Carbon, Seth; Chan, Juancarlos; Chen, Wen J.; Cherry, J. Michael; Cho, Jaehyoung; Crosby, Madeline A.; De Pons, Jeffrey L.; D'Eustachio, Peter; Diamantakis, Stavros; Dolan, Mary E.; dos Santos, Gilberto; Dyer, Sarah; Ebert, Dustin; Engel, Stacia R.; Fashena, David; Fisher, Malcolm; Foley, Saoirse; Gibson, Adam C.; Gollapally, Varun R.; Gramates, L. Sian; Grove, Christian A.; Hale, Paul; Harris, Todd; Hayman, G. Thomas; Hu, Yanhui; James-Zorn, Christina; Karimi, Kamran; Karra, Kalpana; Kishore, Ranjana; Kwitek, Anne E.; Laulederkind, Stanley J. F.; Lee, Raymond; Longden, Ian; Luypaert, Manuel; Markarian, Nicholas; Marygold, Steven J.; Matthews, Beverley; McAndrews, Monica S.; Millburn, Gillian; Miyasato, Stuart; Motenko, Howie; Moxon, Sierra; Muller, Hans-Michael; Mungall, Christopher J.; Muruganujan, Anushya; Mushayahama, Tremayne; Nash, Robert S.; Nuin, Paulo; Paddock, Holly; Pells, Troy; Perrimon, Norbert; Pich, Christian; Quinton-Tulloch, Mark; Raciti, Daniela; Ramachandran, Sridhar; Richardson, Joel E.; Gelbart, Susan Russo; Ruzicka, Leyla; Schindelman, Gary; Shaw, David R.; Sherlock, Gavin; Shrivatsav, Ajay; Singer, Amy; Smith, Constance M.; Smith, Cynthia L.; Smith, Jennifer R.; Stein, Lincoln; Sternberg, Paul W.; Tabone, Christopher J.; Thomas, Paul D.; Thorat, Ketaki; Thota, Jyothi; Tomczuk, Monika; Trovisco, Vitor; Tutaj, Marek A.; Urbano, Jose-Maria; Van Auken, Kimberly; Van Slyke, Ceri E.; Vize, Peter D.; Wang, Qinghua; Weng, Shuai; Westerfield, Monte; Wilming, Laurens G.; Wong, Edith D.; Wright, Adam; Yook, Karen; Zhou, Pinglei; Zorn, Aaron; Zytkovicz, Mark
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The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species
err2023-11-24
err7
errOAAI
errPutman, Tim E.; Schaper, Kevin; Matentzoglu, Nicolas; Rubinetti, Vincent P.; Alquaddoomi, Faisal S.; Cox, Corey; Caufield, J. Harry; Elsarboukh, Glass; Gehrke, Sarah; Hegde, Harshad; Reese, Justin T.; Braun, Ian; Bruskiewich, Richard M.; Cappelletti, Luca; Carbon, Seth; Caron, Anita R.; Chan, Lauren E.; Chute, Christopher G.; Cortes, Katherina G.; De Souza, Vinicius; Fontana, Tommaso; Harris, Nomi L.; Hartley, Emily L.; Hurwitz, Eric; Jacobsen, Julius O. B.; Krishnamurthy, Madan; Laraway, Bryan J.; McLaughlin, James A.; McMurry, Julie A.; Moxon, Sierra A. T.; Mullen, Kathleen R.; O'Neil, Shawn T.; Shefchek, Kent A.; Stefancsik, Ray; Toro, Sabrina; Vasilevsky, Nicole A.; Walls, Ramona L.; Whetzel, Patricia L.; Osumi-Sutherland, David; Smedley, Damian; Robinson, Peter N.; Mungall, Christopher J.; Haendel, Melissa A.; Munoz-Torres, Monica C.
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The Gene Ontology knowledgebase in 2023
err2023-03-03
err774
errOAAI
errAleksander, Suzi A.; Balhoff, James; Carbon, Seth; Cherry, J. Michael; Drabkin, Harold J.; Ebert, Dustin; Feuermann, Marc; Gaudet, Pascale; Harris, Nomi L.; Hill, David P.; Lee, Raymond; Mi, Huaiyu; Moxon, Sierra; Mungall, Christopher J.; Muruganugan, Anushya; Mushayahama, Tremayne; Sternberg, Paul W.; Thomas, Paul D.; Van Auken, Kimberly; Ramsey, Jolene; Siegele, Deborah A.; Chisholm, Rex L.; Fey, Petra; Aspromonte, Maria Cristina; Nugnes, Maria Victoria; Quaglia, Federica; Tosatto, Silvio; Giglio, Michelle; Nadendla, Suvarna; Antonazzo, Giulia; Attrill, Helen; dos Santos, Gil; Marygold, Steven; Strelets, Victor; Tabone, Christopher J.; Thurmond, Jim; Zhou, Pinglei; Ahmed, Saadullah H.; Asanitthong, Praoparn; Luna Buitrago, Diana; Erdol, Meltem N.; Gage, Matthew C.; Ali Kadhum, Mohamed; Li, Kan Yan Chloe; Long, Miao; Michalak, Aleksandra; Pesala, Angeline; Pritazahra, Armalya; Saverimuttu, Shirin C. C.; Su, Renzhi; Thurlow, Kate E.; Lovering, Ruth C.; Logie, Colin; Oliferenko, Snezhana; Blake, Judith; Christie, Karen; Corbani, Lori; Dolan, Mary E.; Sitnikov, Dmitry; Smith, Cynthia; Cuzick, Alayne; Seager, James; Cooper, Laurel; Elser, Justin; Jaiswal, Pankaj; Gupta, Parul; Naithani, Sushma; Lera-Ramirez, Manuel; Rutherford, Kim; Wood, Valerie; De Pons, Jeffrey L.; Dwinell, Melinda R.; Hayman, G. Thomas; Kaldunski, Mary L.; Kwitek, Anne E.; Laulederkind, Stanley J. F.; Tutaj, Marek A.; Vedi, Mahima; Wang, Shur-Jen; D'Eustachio, Peter; Aimo, Lucila; Axelsen, Kristian; Bridge, Alan; Hyka-Nouspikel, Nevila; Morgat, Anne; Engel, Stacia R.; Karra, Kalpana; Miyasato, Stuart R.; Nash, Robert S.; Skrzypek, Marek S.; Weng, Shuai; Wong, Edith D.; Bakker, Erika; Berardini, Tanya Z.; Reiser, Leonore; Auchincloss, Andrea; Argoud-Puy, Ghislaine; Blatter, Marie-Claude; Boutet, Emmanuel; Breuza, Lionel; Casals-Casas, Cristina; Coudert, Elisabeth; Estreicher, Anne; Livia Famiglietti, Maria; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hulo, Chantal; Jungo, Florence; Le Mercier, Philippe; Lieberherr, Damien; Masson, Patrick; Pedruzzi, Ivo; Pourcel, Lucille; Poux, Sylvain; Rivoire, Catherine; Sundaram, Shyamala; Bateman, Alex; Bowler-Barnett, Emily; Bye-A-Jee, Hema; Denny, Paul; Ignatchenko, Alexandr; Ishtiaq, Rizwan; Lock, Antonia; Lussi, Yvonne; Magrane, Michele; Martin, Maria J.; Orchard, Sandra; Raposo, Pedro; Speretta, Elena; Tyagi, Nidhi; Warner, Kate; Zaru, Rossana; Diehl, Alexander D.; Chan, Juancarlos; Diamantakis, Stavros; Raciti, Daniela; Zarowiecki, Magdalena; Fisher, Malcolm; James-Zorn, Christina; Ponferrada, Virgilio; Zorn, Aaron; Ramachandran, Sridhar; Ruzicka, Leyla; Westerfield, Monte
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Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
err2022-06-06
err40
errOAAI
errUnni, Deepak R.; Moxon, Sierra A. T.; Bada, Michael; Brush, Matthew; Bruskiewich, Richard; Caufield, J. Harry; Clemons, Paul A.; Dancik, Vlado; Dumontier, Michel; Fecho, Karamarie; Glusman, Gustavo; Hadlock, Jennifer J.; Harris, Nomi L.; Joshi, Arpita; Putman, Tim; Qin, Guangrong; Ramsey, Stephen A.; Shefchek, Kent A.; Solbrig, Harold; Soman, Karthik; Thessen, Anne E.; Haendel, Melissa A.; Bizon, Chris; Mungall, Christopher J.
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A Simple Standard for Sharing Ontological Mappings (SSSOM)
err2022-05-25
err31
errOAAI
errMatentzoglu, Nicolas; Balhoff, James P.; Bello, Susan M.; Bizon, Chris; Brush, Matthew; Callahan, Tiffany J.; Chute, Christopher G.; Duncan, William D.; Evelo, Chris T.; Gabriel, Davera; Graybeal, John; Gray, Alasdair; Gyori, Benjamin M.; Haendel, Melissa; Harmse, Henriette; Harris, Nomi L.; Harrow, Ian; Hegde, Harshad B.; Hoyt, Amelia L.; Hoyt, Charles T.; Jiao, Dazhi; Jimenez-Ruiz, Ernesto; Jupp, Simon; Kim, Hyeongsik; Koehler, Sebastian; Liener, Thomas; Long, Qinqin; Malone, James; McLaughlin, James A.; McMurry, Julie A.; Moxon, Sierra; Munoz-Torres, Monica C.; Osumi-Sutherland, David; Overton, James A.; Peters, Bjoern; Putman, Tim; Queralt-Rosinach, Nuria; Shefchek, Kent; Solbrig, Harold; Thessen, Anne; Tudorache, Tania; Vasilevsky, Nicole; Wagner, Alex H.; Mungall, Christopher J.
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Alliance of Genome Resources Portal: unified model organism research platform
err2019-09-25
err117
errOAAI
errAgapite, Julie; Albou, Laurent-Philippe; Aleksander, Suzi; Argasinska, Joanna; Arnaboldi, Valerio; Attrill, Helen; Bello, Susan M.; Blake, Judith A.; Blodgett, Olin; Bradford, Yvonne M.; Bult, Carol J.; Cain, Scott; Calvi, Brian R.; Carbon, Seth; Chan, Juancarlos; Chen, Wen J.; Cherry, J. Michael; Cho, Jaehyoung; Christie, Karen R.; Crosby, Madeline A.; De Pons, Jeff; Dolan, Mary E.; dos Santos, Gilberto; Dunn, Barbara Dunn Nathan; Eagle, Anne; Ebert, Dustin; Engel, Stacia R.; Fashena, David; Frazer, Ken; Gao, Sibyl; Gondwe, Felix; Goodman, Josh; Gramates, L. Sian; Grove, Christian A.; Harris, Todd; Harrison, Marie-Claire; Howe, Douglas G.; Howe, Kevin L.; Jha, Sagar; Kadin, James A.; Kaufman, Thomas C.; Kalita, Patrick; Karra, Kalpana; Kishore, Ranjana; Laulederkind, Stan; Lee, Raymond; MacPherson, Kevin A.; Marygold, Steven J.; Matthews, Beverley; Millburn, Gillian; Miyasato, Stuart; Moxon, Sierra; Mueller, Hans-Michael; Mungall, Christopher; Muruganujan, Anushya; Mushayahama, Tremayne; Nash, Robert S.; Ng, Patrick; Paulini, Michael; Perrimon, Norbert; Pich, Christian; Raciti, Daniela; Richardson, Joel E.; Russell, Matthew; Gelbart, Susan Russo; Ruzicka, Leyla; Schaper, Kevin; Shimoyama, Mary; Simison, Matt; Smith, Cynthia; Shaw, David R.; Shrivatsav, Ajay; Skrzypek, Marek; Smith, Jennifer R.; Sternberg, Paul W.; Tabone, Christopher J.; Thomas, Paul D.; Thota, Jyothi; Toro, Sabrina; Tomczuk, Monika; Tutaj, Marek; Tutaj, Monika; Urbano, Jose-Maria; Van Auken, Kimberly; Van Slyke, Ceri E.; Wang, Shur-Jen; Weng, Shuai; Westerfield, Monte; Williams, Gary; Wong, Edith D.; Wright, Adam; Yook, Karen
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Model organism data evolving in support of translational medicine
err2018-09-17
err30
errOAAI
errHowe, Douglas G.; Blake, Judith A.; Bradford, Yvonne M.; Bult, Carol J.; Calvi, Brian R.; Enge, Stacia R.; Kadin, James A.; Kaufman, Thomas C.; Kishores, Ranjana; Laulederkind, Stanleyj F.; Lewis, Suzanna E.; Moxon, Sierra A. T.; Richardson, Joel E.; Smith, Cynthia
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Zebrafish Models of Human Disease: Gaining Insight into Human Disease at ZFIN
err2017-07-27
err117
errOAAI
errBradford, Yvonne M.; Toro, Sabrina; Ramachandran, Sridhar; Ruzicka, Leyla; Howe, Douglas G.; Eagle, Anne; Kalita, Patrick; Martin, Ryan; Moxon, Sierra A. Taylor; Schaper, Kevin; Westerfield, Monte
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InterMOD: integrated data and tools for the unification of model organism research (vol 3, 1802, 2013)
err2013-11-22
err0
errOAAI
errSullivan, Julie; Karra, Kalpana; Moxon, Sierra A. T.; Vallejos, Andrew; Motenko, Howie; Wong, J. D.; Aleksic, Jelena; Balakrishnan, Rama; Binkley, Gail; Harris, Todd; Hitz, Benjamin; Jayaraman, Pushkala; Lyne, Rachel; Neuhauser, Steven; Pich, Christian; Smith, Richard N.; Quang Trinh; Cherry, J. Michael; Richardson, Joel; Stein, Lincoln; Twigger, Simon; Westerfield, Monte; Worthey, Elizabeth; Micklem, Gos
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InterMOD: integrated data and tools for the unification of model organism research
err2013-05-08
err21
errOAAI
errSullivan, Julie; Karra, Kalpana; Moxon, Sierra A. T.; Vallejos, Andrew; Motenko, Howie; Wong, J. D.; Aleksic, Jelena; Balakrishnan, Rama; Binkley, Gail; Harris, Todd; Hitz, Benjamin; Jayaraman, Pushkala; Lyne, Rachel; Neuhauser, Steven; Pich, Christian; Smith, Richard N.; Quang Trinh; Cherry, J. Michael; Richardson, Joel; Stein, Lincoln; Twigger, Simon; Westerfield, Monte; Worthey, Elizabeth; Micklem, Gos
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ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics
err2012-10-15
err222
errOAAI
errHowe, Douglas G.; Bradford, Yvonne M.; Conlin, Tom; Eagle, Anne E.; Fashena, David; Frazer, Ken; Knight, Jonathan; Mani, Prita; Martin, Ryan; Moxon, Sierra A. Taylor; Paddock, Holly; Pich, Christian; Ramachandran, Sridhar; Ruef, Barbara J.; Ruzicka, Leyla; Schaper, Kevin; Shao, Xiang; Singer, Amy; Sprunger, Brock; Van Slyke, Ceri E.; Westerfield, Monte
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ZFIN: enhancements and updates to the zebrafish model organism database
err2010-10-29
err204
errOAAI
errBradford, Yvonne; Conlin, Tom; Dunn, Nathan; Fashena, David; Frazer, Ken; Howe, Douglas G.; Knight, Jonathan; Mani, Prita; Martin, Ryan; Moxon, Sierra A. T.; Paddock, Holly; Pich, Christian; Ramachandran, Sridhar; Ruef, Barbara J.; Ruzicka, Leyla; Schaper, Holle Bauer; Schaper, Kevin; Shao, Xiang; Singer, Amy; Sprague, Judy; Sprunger, Brock; Van Slyke, Ceri; Westerfield, Monte
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The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes
err2007-12-23
err137
errOAAI
errSprague, Judy; Bayraktaroglu, Leyla; Bradford, Yvonne; Conlin, Tom; Dunn, Nathan; Fashena, David; Frazer, Ken; Haendel, Melissa; Howe, Douglas G.; Knight, Jonathan; Mani, Prita; Moxon, Sierra A. T.; Pich, Christian; Ramachandran, Sridhar; Schaper, Kevin; Segerdell, Erik; Shao, Xiang; Singer, Amy; Song, Peiran; Sprunger, Brock; Van Slyke, Ceri E.; Westerfield, Monte
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