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Deciphering the tumor microenvironment at single-cell resolution using a workflow combining RNA transcript and protein detection with Brightplex ®, a sequential chromogenic multiplex assay Trinh, Alex; Olive, Marion; Collignon, Aurelie; Chamourin, Maite; Culley, Georgia; Jaume, Clemence; Leca, Vanina; Benchaaben, Assil; Bussotti, Giovanni; Kassambara, Alboukadel; Galon, Jerome; Fieschi, Jacques Share Save
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Experimental evolution links post-transcriptional regulation to Leishmania fitness gain Piel, Laura; Rajan, K. Shanmugha; Bussotti, Giovanni; Varet, Hugo; Legendre, Rachel; Proux, Caroline; Douche, Thibaut; Giai-Gianetto, Quentin; Chaze, Thibault; Cokelaer, Thomas; Vojtkova, Barbora; Gordon-Bar, Nadav; Doniger, Tirza; Cohen-Chalamish, Smadar; Rengaraj, Praveenkumar; Besse, Celine; Boland, Anne; Sadlova, Jovana; Deleuze, Jean-Francois; Matondo, Mariette; Unger, Ron; Volf, Petr; Michaeli, Shulamit; Pescher, Pascale; Spath, Gerald Share Save
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The oxidative stress response of pathogenic Leptospira is controlled by two peroxide stress regulators which putatively cooperate in controlling virulence Zavala-Alvarado, Crispin; G. Huete, Samuel; Vincent, Antony T.; Sismeiro, Odile; Legendre, Rachel; Varet, Hugo; Bussotti, Giovanni; Lorioux, Celine; Lechat, Pierre; Coppee, Jean-Yves; Veyrier, Frederic J.; Picardeau, Mathieu; Benaroudj, Nadia Share Save
Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis Groves, Ian J.; Drane, Emma L. A.; Michalski, Marco; Monahan, Jack M.; Scarpini, Cinzia G.; Smith, Stephen P.; Bussotti, Giovanni; Varnai, Csilla; Schoenfelder, Stefan; Fraser, Peter; Enright, Anton J.; Coleman, Nicholas; Munger, Karl; Gewurz, Benjamin E.; Munger, Karl; Gewurz, Benjamin E.; Munger, Karl; Gewurz, Benjamin E.; Munger, Karl; Gewurz, Benjamin E. Share Save
Colonization and genetic diversification processes of Leishmania infantum in the Americas Schwabl, Philipp; Boite, Mariana C.; Bussotti, Giovanni; Jacobs, Arne; Andersson, Bjorn; Moreira, Otacilio; Freitas-Mesquita, Anita L.; Meyer-Fernandes, Jose Roberto; Telleria, Erich L.; Traub-Cseko, Yara; Vaselek, Slavica; Lestinova, Tereza; Volf, Petr; Morgado, Fernanda N.; Porrozzi, Renato; Llewellyn, Martin; Spath, Gerald F.; Cupolillo, Elisa Share Save
The transcriptional response of pathogenicLeptospirato peroxide reveals new defenses against infection-related oxidative stress Zavala-Alvarado, Crispin; Sismeiro, Odile; Legendre, Rachel; Varet, Hugo; Bussotti, Giovanni; Bayram, Jan; G. Huete, Samuel; Rey, Guillaume; Coppee, Jean-Yves; Picardeau, Mathieu; Benaroudj, Nadia Share Save
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Targeting Macrophage Histone H3 Modification as a Leishmania Strategy to Dampen the NF-κB/NLRP3-Mediated Inflammatory Response Lecoeur, Herve; Prina, Eric; Rosazza, Thibault; Kokou, Kossiwa; N'Diaye, Paya; Aulner, Nathalie; Varet, Hugo; Bussotti, Giovanni; Xing, Yue; Milon, Genevieve; Weil, Robert; Meng, Guangxun; Spath, Gerald F. Share Save
Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification Bussotti, Giovanni; Gouzelou, Evi; Boite, Mariana Cortes; Kherachi, Ihcen; Harrat, Zoubir; Eddaikra, Naouel; Mottram, Jeremy C.; Antoniou, Maria; Christodoulou, Vasiliki; Bali, Aymen; Guerfali, Fatma Z.; Laouini, Dhafer; Mukhtar, Maowia; Dumetz, Franck; Dujardin, Jean-Claude; Smirlis, Despina; Lechat, Pierre; Pescher, Pascale; El Hamouchi, Adil; Lemrani, Meryem; Chicharro, Carmen; Pamela Llanes-Acevedo, Ivonne; Botana, Laura; Cruz, Israel; Moreno, Javier; Jeddi, Fakhri; Aoun, Karim; Bouratbine, Aida; Cupolillo, Elisa; Spath, Gerald F. Share Save
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Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani Prieto Barja, Pablo; Pescher, Pascale; Bussotti, Giovanni; Dumetz, Franck; Imamura, Hideo; Kedra, Darek; Domagalska, Malgorzata; Chaumeau, Victor; Himmelbauer, Heinz; Pages, Michel; Sterkers, Yvon; Dujardin, Jean-Claude; Notredame, Cedric; Spath, Gerald Frank Share Save
Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression Dumetz, F.; Imamura, H.; Sanders, M.; Seblova, V.; Myskova, J.; Pescher, P.; Vanaerschot, M.; Meehan, C. J.; Cuypers, B.; De Muylder, G.; Spath, G. F.; Bussotti, G.; Vermeesch, J. R.; Berriman, M.; Cotton, J. A.; Volf, P.; Dujardin, J. C.; Domagalska, M. A. Share Save
Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution Davis, Matthew P.; Carrieri, Claudia; Saini, Harpreet K.; van Dongen, Stijn; Leonardi, Tommaso; Bussotti, Giovanni; Monahan, Jack M.; Auchynnikava, Tania; Bitetti, Angelo; Rappsilber, Juri; Allshire, Robin C.; Shkumatava, Alena; O'Carroll, Donal; Enright, Anton J. Share Save
Intron retention-dependent gene regulation in Cryptococcus neoformans Gonzalez-Hilarion, Sara; Paulet, Damien; Lee, Kyung-Tae; Hon, Chung-Chau; Lechat, Pierre; Mogensen, Estelle; Moyrand, Frederique; Proux, Caroline; Barboux, Rony; Bussotti, Giovanni; Hwang, Jungwook; Coppee, Jean-Yves; Bahn, Yong-Sun; Janbon, Guilhem Share Save
Improved definition of the mouse transcriptome via targeted RNA sequencing Bussotti, Giovanni; Leonardi, Tommaso; Clark, Michael B.; Mercer, Tim R.; Crawford, Joanna; Malquori, Lorenzo; Notredame, Cedric; Dinger, Marcel E.; Mattick, John S.; Enright, Anton J. Share Save
CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis Ounzain, Samir; Micheletti, Rudi; Arnan, Carme; Plaisance, Isabelle; Cecchi, Dario; Schroen, Blanche; Reverter, Ferran; Alexanian, Michael; Gonzales, Christine; Ng, Shi Yan; Bussotti, Giovanni; Pezzuto, Iole; Notredame, Cedric; Heymans, Stephane; Guigo, Roderic; Johnson, Rory; Pedrazzini, Thierry Share Save
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