Not logged inEpihiper-A high performance computational modeling framework to support epidemic science
Chen, Jiangzhuo; Hoops, Stefan; Mortveit, Henning S.; Lewis, Bryan L.; Machi, Dustin; Bhattacharya, Parantapa; Venkatramanan, Srinivasan; Wilson, Mandy L.; Barrett, Chris L.; Marathe, Madhav, V .png)
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SaveNovel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spreadBhattacharya, Parantapa; Machi, Dustin; Chen, Jiangzhuo; Hoops, Stefan; Lewis, Bryan; Mortveit, Henning; Venkatramanan, Srinivasan; Wilson, Mandy L.; Marathe, Achla; Porebski, Przemyslaw; Klahn, Brian; Outten, Joseph; Vullikanti, Anil; Xie, Dawen; Adiga, Abhijin; Brown, Shawn; Barrett, Christopher; Marathe, Madhav Share Save Share Save Augmenting the Social Vulnerability Index using an agent-based simulation of Hurricane HarveyBrower, Anna E.; Ramesh, Balaji; Islam, Kazi Ashik; Mortveit, Henning S.; Hoops, Stefan; Vullikanti, Anil; Marathe, Madhav, V; Zaitchik, Benjamin; Gohlke, Julia M.; Swarup, Samarth Share Save Impact of SARS-CoV-2 vaccination of children ages 5-11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: A multi-model studyBorchering, Rebecca K.; Mullany, Luke C.; Howerton, Emily; Chinazzi, Matteo; Smith, Claire P.; Qin, Michelle; Reich, Nicholas G.; Contamin, Lucie; Levander, John; Kerr, Jessica; Espino, J.; Hochheiser, Harry; Lovett, Kaitlin; Kinsey, Matt; Tallaksen, Kate; Wilson, Shelby; Shin, Lauren; Lemaitre, Joseph C.; Hulse, Juan Dent; Kaminsky, Joshua; Lee, Elizabeth C.; Hill, Alison L.; Davis, Jessica T.; Mu, Kunpeng; Xiong, Xinyue; Piontti, Ana Pastore Y.; Vespignani, Alessandro; Srivastava, Ajitesh; Porebski, Przemyslaw; Venkatramanan, Srini; Adiga, Aniruddha; Lewis, Bryan; Klahn, Brian; Outten, Joseph; Hurt, Benjamin; Chen, Jiangzhuo; Mortveit, Henning; Wilson, Amanda; Marathe, Madhav; Hoops, Stefan; Bhattacharya, Parantapa; Machi, Dustin; Chen, Shi; Paul, Rajib; Janies, Daniel; Thill, Jean-Claude; Galanti, Marta; Yamana, Teresa; Pei, Sen; Shaman, Jeffrey; Espana, Guido; Cavany, Sean; Moore, Sean; Perkins, Alex; Healy, Jessica M.; Slayton, Rachel B.; Johansson, Michael A.; Biggerstaff, Matthew; Shea, Katriona; Truelove, Shaun A.; Runge, Michael C.; Viboud, Cecile; Lessler, Justin Share Save Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision supportBhattacharya, Parantapa; Chen, Jiangzhuo; Hoops, Stefan; Machi, Dustin; Lewis, Bryan; Venkatramanan, Srinivasan; Wilson, Mandy L.; Klahn, Brian; Adiga, Aniruddha; Hurt, Benjamin; Outten, Joseph; Adiga, Abhijin; Warren, Andrew; Baek, Young Yun; Porebski, Przemyslaw; Marathe, Achla; Xie, Dawen; Swarup, Samarth; Vullikanti, Anil; Mortveit, Henning; Eubank, Stephen; Barrett, Christopher L.; Marathe, Madhav Share Save Share Save Projected resurgence of COVID-19 in the United States in July-December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccinationTruelove, Shaun; Smith, Claire P.; Qin, Michelle; Mullany, Luke C.; Borchering, Rebecca K.; Lessler, Justin; Shea, Katriona; Howerton, Emily; Contamin, Lucie; Levander, John; Kerr, Jessica; Hochheiser, Harry; Kinsey, Matt; Tallaksen, Kate; Wilson, Shelby; Shin, Lauren; Rainwater-Lovett, Kaitlin; Lemairtre, Joseph C.; Dent, Juan; Kaminsky, Joshua; Lee, Elizabeth C.; Perez-Saez, Javier; Hill, Alison; Karlen, Dean; Chinazzi, Matteo; Davis, Jessica T.; Mu, Kunpeng; Xiong, Xinyue; Piontti, Ana Pastore Y.; Vespignani, Alessandro; Srivastava, Ajitesh; Porebski, Przemyslaw; Venkatramanan, Srinivasan; Adiga, Aniruddha; Lewis, Bryan; Klahn, Brian; Outten, Joseph; Orr, Mark; Harrison, Galen; Hurt, Benjamin; Chen, Jiangzhuo; Vullikanti, Anil; Marathe, Madhav; Hoops, Stefan; Bhattacharya, Parantapa; Machi, Dustin; Chen, Shi; Paul, Rajib; Janies, Daniel; Thill, Jean-Claude; Galanti, Marta; Yamana, Teresa K.; Pei, Sen; Shaman, Jeffrey L.; Healy, Jessica M.; Slayton, Rachel B.; Biggerstaff, Matthew; Johansson, Michael A.; Runge, Michael C.; Viboud, Cecile Share Save BioSimulators: a central registry of simulation engines and services for recommending specific toolsShaikh, Bilal; Smith, Lucian P.; Vasilescu, Dan; Marupilla, Gnaneswara; Wilson, Michael; Agmon, Eran; Agnew, Henry; Andrews, Steven S.; Anwar, Azraf; Beber, Moritz E.; Bergmann, Frank T.; Brooks, David; Brusch, Lutz; Calzone, Laurence; Choi, Kiri; Cooper, Joshua; Detloff, John; Drawert, Brian; Dumontier, Michel; Ermentrout, G. Bard; Faeder, James R.; Freiburger, Andrew P.; Frohlich, Fabian; Funahashi, Akira; Garny, Alan; Gennari, John H.; Gleeson, Padraig; Goelzer, Anne; Haiman, Zachary; Hasenauer, Jan; Hellerstein, Joseph L.; Hermjakob, Henning; Hoops, Stefan; Ison, Jon C.; Jahn, Diego; Jakubowski, Henry, V; Jordan, Ryann; Kalas, Matus; Koenig, Matthias; Liebermeister, Wolfram; Sheriff, Rahuman S. Malik; Mandal, Synchon; McDougal, Robert; Medley, J. Kyle; Mendes, Pedro; Mueller, Robert; Myers, Chris J.; Naldi, Aurelien; Nguyen, Tung V. N.; Nickerson, David P.; Olivier, Brett G.; Patoliya, Drashti; Pauleve, Loic; Petzold, Linda R.; Priya, Ankita; Rampadarath, Anand K.; Rohwer, Johann M.; Saglam, Ali S.; Singh, Dilawar; Sinha, Ankur; Snoep, Jacky; Sorby, Hugh; Spangler, Ryan; Starruss, Joern; Thomas, Payton J.; van Niekerk, David; Weindl, Daniel; Zhang, Fengkai; Zhukova, Anna; Goldberg, Arthur P.; Schaff, James C.; Blinov, Michael L.; Sauro, Herbert M.; Moraru, Ion I.; Karr, Jonathan R. Share Save Epidemiological and economic impact of COVID-19 in the USChen, Jiangzhuo; Vullikanti, Anil; Santos, Joost; Venkatramanan, Srinivasan; Hoops, Stefan; Mortveit, Henning; Lewis, Bryan; You, Wen; Eubank, Stephen; Marathe, Madhav; Barrett, Chris; Marathe, Achla Share Save Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus researchHufsky, Franziska; Lamkiewicz, Kevin; Almeida, Alexandre; Aouacheria, Abdel; Arighi, Cecilia; Bateman, Alex; Baumbach, Jan; Beerenwinkel, Niko; Brandt, Christian; Cacciabue, Marco; Chuguransky, Sara; Drechsel, Oliver; Finn, Robert D.; Fritz, Adrian; Fuchs, Stephan; Hattab, Georges; Hauschild, Anne-Christin; Heider, Dominik; Hoffmann, Marie; Hoelzer, Martin; Hoops, Stefan; Kaderali, Lars; Kalvari, Ioanna; von Kleist, Max; Kmiecinski, Reno; Kuehnert, Denise; Lasso, Gorka; Libin, Pieter; List, Markus; Loechel, Hannah F.; Martin, Maria J.; Martin, Roman; Matschinske, Julian; McHardy, Alice C.; Mendes, Pedro; Mistry, Jaina; Navratil, Vincent; Nawrocki, Eric P.; O'Toole, Aine Niamh; Ontiveros-Palacios, Nancy; Petrov, Anton, I; Rangel-Pineros, Guillermo; Redaschi, Nicole; Reimering, Susanne; Reinert, Knut; Reyes, Alejandro; Richardson, Lorna; Robertson, David L.; Sadegh, Sepideh; Singer, Joshua B.; Theys, Kristof; Upton, Chris; Welzel, Marius; Williams, Lowri; Marz, Manja Share Save Medical costs of keeping the US economy open during COVID-19Chen, Jiangzhuo; Vullikanti, Anil; Hoops, Stefan; Mortveit, Henning; Lewis, Bryan; Venkatramanan, Srinivasan; You, Wen; Eubank, Stephen; Marathe, Madhav; Barrett, Chris; Marathe, Achla Share Save SBML Level 3: an extensible format for the exchange and reuse of biological modelsKeating, Sarah M.; Waltemath, Dagmar; Koenig, Matthias; Zhang, Fengkai; Draeger, Andreas; Chaouiya, Claudine; Bergmann, Frank T.; Finney, Andrew; Gillespie, Colin S.; Helikar, Tomas; Hoops, Stefan; Malik-Sheriff, Rahuman S.; Moodie, Stuart L.; Moraru, Ion I.; Myers, Chris J.; Naldi, Aurelien; Olivier, Brett G.; Sahle, Sven; Schaff, James C.; Smith, Lucian P.; Swat, Maciej J.; Thieffry, Denis; Watanabe, Leandro; Wilkinson, Darren J.; Blinov, Michael L.; Begley, Kimberly; Faeder, James R.; Gomez, Harold F.; Hamm, Thomas M.; Inagaki, Yuichiro; Liebermeister, Wolfram; Lister, Allyson L.; Lucio, Daniel; Mjolsness, Eric; Proctor, Carole J.; Raman, Karthik; Rodriguez, Nicolas; Shaffer, Clifford A.; Shapiro, Bruce E.; Stelling, Joerg; Swainston, Neil; Tanimura, Naoki; Wagner, John; Meier-Schellersheim, Martin; Sauro, Herbert M.; Palsson, Bernhard; Bolouri, Hamid; Kitano, Hiroaki; Funahashi, Akira; Hermjakob, Henning; Doyle, John C.; Hucka, Michael Share Save Share Save Share Save Share Save Share Save Share Save Share Save Share Save 
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