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High-performance protocol for ultra-short DNA sequencing using Oxford Nanopore Technology (ONT) Zemaitis, Lukas; Palepsiene, Ruta; Juzenas, Simonas; Alzbutas, Gediminas; Burgi, Pierre-Yves; Heinis, Thomas; Charmet, Jerome; Suter, Silvia Angeloni; Jost, Martin; Raisutis, Renaldas; Simmel, Friedrich; Galminas, Ignas Share Save
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The microRNA Expression in Crypt-Top and Crypt-Bottom Colonic Epithelial Cell Populations Demonstrates Cell-Type Specificity and Correlates with Endoscopic Activity in Ulcerative Colitis Inciuraite, Ruta; Ramonaite, Rima; Kupcinskas, Juozas; Dalgediene, Indre; Kulokiene, Ugne; Kiudelis, Vytautas; Varkalaite, Greta; Zvirbliene, Aurelija; Jonaitis, Laimas Virginijus; Kiudelis, Gediminas; Franke, Andre; Schreiber, Stefan; Juzenas, Simonas; Skieceviciene, Jurgita Share Save
Single-cell transcriptional profiling of clear cell renal cell carcinoma reveals a tumor-associated endothelial tip cell phenotype Zvirblyte, Justina; Nainys, Juozas; Juzenas, Simonas; Goda, Karolis; Kubiliute, Raimonda; Dasevicius, Darius; Kincius, Marius; Ulys, Albertas; Jarmalaite, Sonata; Mazutis, Linas Share Save
Genome-wide association analysis reveals the associations of NPHP4, TYW1-AUTS2 and SEMA6D for Behcet's disease and HLA-B*46:01 for its intestinal involvement Jung, Eun Suk; Ellinghaus, David; Degenhardt, Frauke; Meguro, Akira; Khor, Seik-Soon; Mucha, Soeren; Wendorff, Mareike; Juzenas, Simonas; Mizuki, Nobuhisa; Tokunaga, Katsushi; Kim, Seung Won; Lee, Min Goo; Schreiber, Stefan; Kim, Won Ho; Franke, Andre; Cheon, Jae Hee Share Save
Dynamic changes in extracellular vesicle-associated miRNAs elicited by ultrasound in inflammatory bowel disease patients Tran, Florian; Scharmacher, Alena; Baran, Nathan; Mishra, Neha; Wozny, Marek; Chavez, Samuel Pineda; Bhardwaj, Archana; Hinz, Sophia; Juzenas, Simonas; Bernardes, Joana P.; Sievers, Laura Katharina; Lessing, Matthias; Aden, Konrad; Lassen, Arne; Bergfeld, Arne; Weber, Hauke Jann; Neas, Lennart; Vetrano, Stefania; Schreiber, Stefan; Rosenstiel, Philip Share Save
Constituents of stable commensal microbiota imply diverse colonic epithelial cell reactivity in patients with ulcerative colitis Inciuraite, Ruta; Gedgaudas, Rolandas; Lukosevicius, Rokas; Tilinde, Deimante; Ramonaite, Rima; Link, Alexander; Kasetiene, Neringa; Malakauskas, Mindaugas; Kiudelis, Gediminas; Jonaitis, Laimas Virginijus; Kupcinskas, Juozas; Juzenas, Simonas; Skieceviciene, Jurgita Share Save
Host genetic factors related to innate immunity, environmental sensing and cellular functions are associated with human skin microbiota Moitinho-Silva, Lucas; Degenhardt, Frauke; Rodriguez, Elke; Emmert, Hila; Juzenas, Simonas; Mobus, Lena; Uellendahl-Werth, Florian; Sander, Nicole; Baurecht, Hansjorg; Tittmann, Lukas; Lieb, Wolfgang; Gieger, Christian; Peters, Annette; Ellinghaus, David; Bang, Corinna; Franke, Andre; Weidinger, Stephan; Ruehlemann, Malte Christoph Share Save
Detailed stratified GWAS analysis for severe COVID-19 in four European populations Degenhardt, Frauke; Ellinghaus, David; Juzenas, Simonas; Lerga-Jaso, Jon; Wendorff, Mareike; Maya-Miles, Douglas; Uellendahl-Werth, Florian; ElAbd, Hesham; Ruehlemann, Malte C.; Arora, Jatin; Oezer, Onur; Lenning, Ole Bernt; Myhre, Ronny; Vadla, May Sissel; Wacker, Eike M.; Wienbrandt, Lars; Blandino Ortiz, Aaron; de Salazar, Adolfo; Garrido Chercoles, Adolfo; Palom, Adriana; Ruiz, Agustin; Garcia-Fernandez, Alba-Estela; Blanco-Grau, Albert; Mantovani, Alberto; Zanella, Alberto; Holten, Aleksander Rygh; Mayer, Alena; Bandera, Alessandra; Cherubini, Alessandro; Protti, Alessandro; Aghemo, Alessio; Gerussi, Alessio; Ramirez, Alfredo; Braun, Alice; Nebel, Almut; Barreira, Ana; Lleo, Ana; Teles, Ana; Kildal, Anders Benjamin; Biondi, Andrea; Caballero-Garralda, Andrea; Ganna, Andrea; Gori, Andrea; Glueck, Andreas; Lind, Andreas; Tanck, Anja; Hinney, Anke; Carreras Nolla, Anna; Fracanzani, Anna Ludovica; Peschuck, Anna; Cavallero, Annalisa; Dyrhol-Riise, Anne Ma; Ruello, Antonella; Julia, Antonio; Muscatello, Antonio; Pesenti, Antonio; Voza, Antonio; Rando-Segura, Ariadna; Solier, Aurora; Schmidt, Axel; Cortes, Beatriz; Mateos, Beatriz; Nafria-Jimenez, Beatriz; Schaefer, Benedikt; Jensen, Bjoern; Bellinghausen, Carla; Maj, Carlo; Ferrando, Carlos; de la Horra, Carmen; Quereda, Carmen; Skurk, Carsten; Thibeault, Charlotte; Scollo, Chiara; Herr, Christian; Spinner, Christoph D.; Gassner, Christoph; Lange, Christoph; Hu, Cinzia; Paccapelo, Cinzia; Lehmann, Clara; Angelini, Claudio; Cappadona, Claudio; Azuure, Clinton; Bianco, Cristiana; Cea, Cristina; Sancho, Cristina; Hoff, Dag Arne Lihaug; Galimberti, Daniela; Prati, Daniele; Haschka, David; Jimenez, David; Pestana, David; Toapanta, David; Muniz-Diaz, Eduardo; Azzolini, Elena; Sandoval, Elena; Binatti, Eleonora; Scarpini, Elio; Helbig, Elisa T.; Casalone, Elisabetta; Urrechaga, Eloisa; Paraboschi, Elvezia Maria; Pontali, Emanuele; Reverter, Enric; Calderon, Enrique J.; Navas, Enrique; Solligard, Erik; Contro, Ernesto; Arana-Arri, Eunate; Aziz, Fatima; Garcia, Federico; Garcia Sanchez, Felix; Ceriotti, Ferruccio; Martinelli-Boneschi, Filippo; Peyvandi, Flora; Kurth, Florian; Blasi, Francesco; Malvestiti, Francesco; Medrano, Francisco J.; Mesonero, Francisco; Rodriguez-Frias, Francisco; Hanses, Frank; Mueller, Fredrik; Hemmrich-Stanisak, Georg; Bellani, Giacomo; Grasselli, Giacomo; Pezzoli, Gianni; Costantino, Giorgio; Albano, Giovanni; Cardamone, Giulia; Bellelli, Giuseppe; Citerio, Giuseppe; Foti, Giuseppe; Lamorte, Giuseppe; Matullo, Giuseppe; Baselli, Guido; Kurihara, Hayato; Neb, Holger; My, Ilaria; Kurth, Ingo; Hernandez, Isabel; Pink, Isabell; de Rojas, Itziar; Galvan-Femenia, Ivan; Holter, Jan Cato; Afset, Jan Egil; Heyckendorf, Jan; Kaessens, Jan; Damas, Jan Kristian; Rybniker, Jan; Altmueller, Janine; Ampuero, Javier; Martin, Javier; Erdmann, Jeanette; Banales, Jesus M.; Badia, Joan Ramon; Dopazo, Joaquin; Schneider, Jochen; Bergan, Jonas; Barretina, Jordi; Walter, Joern; Hernandez Quero, Jose; Goikoetxea, Josune; Delgado, Juan; Guerrero, Juan M.; Fazaal, Julia; Kraft, Julia; Schroeder, Julia; Risnes, Kari; Banasik, Karina; Mueller, Karl Erik; Gaede, Karoline I.; Garcia-Etxebarria, Koldo; Tonby, Kristian; Heggelund, Lars; Izquierdo-Sanchez, Laura; Bettini, Laura Rachele; Sumoy, Lauro; Sander, Leif Erik; Lippert, Lena J.; Terranova, Leonardo; Nkambule, Lindokuhle; Knopp, Lisa; Gustad, Lise Tuset; Garbarino, Lucia; Santoro, Luigi; Tellez, Luis; Roade, Luisa; Ostadreza, Mahnoosh; Intxausti, Maider; Kogevinas, Manolis; Riveiro-Barciela, Mar; Berger, Marc M.; Schaefer, Marco; Niemi, Mari E. K.; Gutierrez-Stampa, Maria A.; Carrabba, Maria; Figuera Basso, Maria E.; Valsecchi, Maria Grazia; Hernandez-Tejero, Maria; Vehreschild, Maria J. G. T.; Manunta, Maria; Acosta-Herrera, Marialbert; D'Angio, Mariella; Baldini, Marina; Cazzaniga, Marina; Grimsrud, Marit M.; Cornberg, Markus; Noethen, Markus M.; Marquie, Marta; Castoldi, Massimo; Cordioli, Mattia; Cecconi, Maurizio; D'Amato, Mauro; Augustin, Max; Tomasi, Melissa; Boada, Merce; Dreher, Michael; Seilmaier, Michael J.; Joannidis, Michael; Wittig, Michael; Mazzocco, Michela; Ciccarelli, Michele; Rodriguez-Gandia, Miguel; Bocciolone, Monica; Miozzo, Monica; Imaz Ayo, Natale; Blay, Natalia; Chueca, Natalia; Montano, Nicola; Braun, Nicole; Ludwig, Nicole; Marx, Nikolaus; Martinez, Nilda; Cornely, Oliver A.; Witzke, Oliver; Palmieri, Orazio; Faverio, Paola; Preatoni, Paoletta; Bonfanti, Paolo; Omodei, Paolo; Tentorio, Paolo; Castro, Pedro; Rodrigues, Pedro M.; Espana, Pedro Pablo; Hoffmann, Per; Rosenstiel, Philip; Schommers, Philipp; Suwalski, Phillip; de Pablo, Raul; Ferrer, Ricard; Bals, Robert; Gualtierotti, Roberta; Gallego-Duran, Rocio; Nieto, Rosa; Carpani, Rossana; Morilla, Ruben; Badalamenti, Salvatore; Haider, Sammra; Ciesek, Sandra; May, Sandra; Bombace, Sara; Marsal, Sara; Pigazzini, Sara; Klein, Sebastian; Pelusi, Serena; Wilfling, Sibylle; Bosari, Silvano; Volland, Sonja; Brunak, Soren; Raychaudhuri, Soumya; Schreiber, Stefan; Heilmann-Heimbach, Stefanie; Aliberti, Stefano; Ripke, Stephan; Dudman, Susanne; Wesse, Tanja; Zheng, Tenghao; Bahmer, Thomas; Eggermann, Thomas; Illig, Thomas; Brenner, Thorsten; Pumarola, Tomas; Feldt, Torsten; Folseraas, Trine; Gonzalez Cejudo, Trinidad; Landmesser, Ulf; Protzer, Ulrike; Hehr, Ute; Rimoldi, Valeria; Monzani, Valter; Skogen, Vegard; Keitel, Verena; Kopfnagel, Verena; Friaza, Vicente; Andrade, Victor; Moreno, Victor; Albrecht, Wolfgang; Peter, Wolfgang; Poller, Wolfgang; Farre, Xavier; Yi, Xiaoli; Wang, Xiaomin; Khodamoradi, Yascha; Karadeniz, Zehra; Latiano, Anna; Goerg, Siegfried; Bacher, Petra; Koehler, Philipp; Tran, Florian; Zoller, Heinz; Schulte, Eva C.; Heidecker, Bettina; Ludwig, Kerstin U.; Fernandez, Javier; Romero-Gomez, Manuel; Albillos, Agustin; Invernizzi, Pietro; Buti, Maria; Duga, Stefano; Bujanda, Luis; Hov, Johannes R.; Lenz, Tobias L.; Asselta, Rosanna; de Cid, Rafael; Valenti, Luca; Karlsen, Tom H.; Caceres, Mario; Franke, Andre Share Save
High-throughput method for the hybridisation-based targeted enrichment of long genomic fragments for PacBio third-generation sequencing Steiert, Tim Alexander; Fuss, Janina; Juzenas, Simonas; Wittig, Michael; Hoeppner, Marc Patrick; Vollstedt, Melanie; Varkalaite, Greta; ElAbd, Hesham; Brockmann, Christian; Goerg, Siegfried; Gassner, Christoph; Forster, Michael; Franke, Andre Share Save
Atrophic gastritis and gastric cancer tissue miRNome analysis reveals hsa-miR-129-1 and hsa-miR-196a as potential early diagnostic biomarkers Varkalaite, Greta; Vaitkeviciute, Evelina; Inciuraite, Ruta; Salteniene, Violeta; Juzenas, Simonas; Petkevicius, Vytenis; Gudaityte, Rita; Mickevicius, Antanas; Link, Alexander; Kupcinskas, Limas; Leja, Marcis; Kupcinskas, Juozas; Skieceviciene, Jurgita Share Save
Cross-tissue transcriptome-wide association studies identify susceptibility genes shared between schizophrenia and inflammatory bowel disease Uellendahl-Werth, Florian; Maj, Carlo; Borisov, Oleg; Juzenas, Simonas; Wacker, Eike Matthias; Jorgensen, Isabella Friis; Steiert, Tim Alexander; Bej, Saptarshi; Krawitz, Peter; Hoffmann, Per; Schramm, Christoph; Wolkenhauer, Olaf; Banasik, Karina; Brunak, Soren; Schreiber, Stefan; Karlsen, Tom Hemming; Degenhardt, Franziska; Noethen, Markus; Franke, Andre; Folseraas, Trine; Ellinghaus, David Share Save
Detailed Transcriptional Landscape of Peripheral Blood Points to Increased Neutrophil Activation in Treatment-Naive Inflammatory Bowel Disease Juzenas, Simonas; Huebenthal, Matthias; Lindqvist, Carl Marten; Kruse, Robert; Steiert, Tim Alexander; Degenhardt, Frauke; Schulte, Dominik; Nikolaus, Susanna; Zeissig, Sebastian; Bergemalm, Daniel; Almer, Sven; Hjortswang, Henrik; Bresso, Francesca; Struening, Nina; Kupcinskas, Juozas; Keller, Andreas; Lieb, Wolfgang; Rosenstiel, Philip; Schreiber, Stefan; D'Amato, Mauro; Halfvarson, Jonas; Hemmrich-Stanisak, Georg; Franke, Andre Share Save
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Transethnic analysis of the human leukocyte antigen region for ulcerative colitis reveals not only shared but also ethnicity-specific disease associations Degenhardt, Frauke; Mayr, Gabriele; Wendorff, Mareike; Boucher, Gabrielle; Ellinghaus, Eva; Ellinghaus, David; ElAbd, Hesham; Rosati, Elisa; Huebenthal, Matthias; Juzenas, Simonas; Abedian, Shifteh; Vahedi, Homayon; Thelma, B. K.; Yang, Suk-Kyun; Ye, Byong Duk; Cheon, Jae Hee; Datta, Lisa Wu; Daryani, Naser Ebrahim; Ellul, Pierre; Esaki, Motohiro; Fuyuno, Yuta; McGovern, Dermot P. B.; Haritunians, Talin; Hong, Myhunghee; Juyal, Garima; Jung, Eun Suk; Kubo, Michiaki; Kugathasan, Subra; Lenz, Tobias L.; Leslie, Stephen; Malekzadeh, Reza; Midha, Vandana; Motyer, Allan; Ng, Siew C.; Okou, David T.; Raychaudhuri, Soumya; Schembri, John; Schreiber, Stefan; Song, Kyuyoung; Sood, Ajit; Takahashi, Atsushi; Torres, Esther A.; Umeno, Junji; Alizadeh, Behrooz Z.; Weersma, Rinse K.; Wong, Sunny H.; Yamazaki, Keiko; Karlsen, Tom H.; Rioux, John D.; Brant, Steven R.; Franke, Andre Share Save
Genomewide Association Study of Severe Covid-19 with Respiratory Failure Ellinghaus, David; Degenhardt, Frauke; Bujanda, Luis; Buti, Maria; Albillos, Agustin; Invernizzi, Pietro; Fernandez, Javier; Prati, Daniele; Baselli, Guido; Asselta, Rosanna; Grimsrud, Marit M.; Milani, Chiara; Aziz, Fatima; Kassens, Jan; May, Sandra; Wendorff, Mareike; Wienbrandt, Lars; Uellendahl-Werth, Florian; Zheng, Tenghao; Yi, Xiaoli; de Pablo, Raul; Chercoles, Adolfo G.; Palom, Adriana; Garcia-Fernandez, Alba-Estela; Rodriguez-Frias, Francisco; Zanella, Alberto; Bandera, Alessandra; Protti, Alessandro; Aghemo, Alessio; Lleo, Ana; Biondi, Andrea; Caballero-Garralda, Andrea; Gori, Andrea; Tanck, Anja; Nolla, Anna Carreras; Latiano, Anna; Fracanzani, Anna Ludovica; Peschuck, Anna; Julia, Antonio; Pesenti, Antonio; Voza, Antonio; Jimenez, David; Mateos, Beatriz; Jimenez, Beatriz Nafria; Quereda, Carmen; Paccapelo, Cinzia; Gassner, Christoph; Angelini, Claudio; Cea, Cristina; Solier, Aurora; Pestana, David; Muniz-Diaz, Eduardo; Sandoval, Elena; Paraboschi, Elvezia M.; Navas, Enrique; Sanchez, Felix Garcia; Ceriotti, Ferruccio; Martinelli-Boneschi, Filippo; Peyvandi, Flora; Blasi, Francesco; Tellez, Luis; Blanco-Grau, Albert; Hemmrich-Stanisak, Georg; Grasselli, Giacomo; Costantino, Giorgio; Cardamone, Giulia; Foti, Giuseppe; Aneli, Serena; Kurihara, Hayato; ElAbd, Hesham; My, Ilaria; Galvan-Femenia, Ivan; Martin, Javier; Erdmann, Jeanette; Ferrusquia-Acosta, Jose; Garcia-Etxebarria, Koldo; Izquierdo-Sanchez, Laura; Bettini, Laura R.; Sumoy, Lauro; Terranova, Leonardo; Moreira, Leticia; Santoro, Luigi; Scudeller, Luigia; Mesonero, Francisco; Roade, Luisa; Ruhlemann, Malte C.; Schaefer, Marco; Carrabba, Maria; Riveiro-Barciela, Mar; Basso, Maria E. Figuera; Valsecchi, Maria G.; Hernandez-Tejero, Maria; Acosta-Herrera, Marialbert; D'Angio, Mariella; Baldini, Marina; Cazzaniga, Marina; Schulzky, Martin; Cecconi, Maurizio; Wittig, Michael; Ciccarelli, Michele; Rodriguez-Gandia, Miguel; Bocciolone, Monica; Miozzo, Monica; Montano, Nicola; Braun, Nicole; Sacchi, Nicoletta; Martinez, Nilda; Ozer, Onur; Palmieri, Orazio; Faverio, Paola; Preatoni, Paoletta; Bonfanti, Paolo; Omodei, Paolo; Tentorio, Paolo; Castro, Pedro; Rodrigues, Pedro M.; Blandino, Aaron; de Cid, Rafael; Ferrer, Ricard; Gualtierotti, Roberta; Nieto, Rosa; Goerg, Siegfried; Badalamenti, Salvatore; Marsal, Sara; Matullo, Giuseppe; Pelusi, Serena; Juzenas, Simonas; Aliberti, Stefano; Monzani, Valter; Moreno, Victor; Wesse, Tanja; Lenz, Tobias L.; Pumarola, Tomas; Rimoldi, Valeria; Bosari, Silvano; Albrecht, Wolfgang; Peter, Wolfgang; Romero-Gomez, Manuel; D'Amato, Mauro; Duga, Stefano; Banales, Jesus M.; Hov, Johannes R.; Folseraas, Trine; Valenti, Luca; Franke, Andre; Karlsen, Tom H. Share Save
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Sequencing-based hematopoietic miRNA landscape reveals common and distinct features of autoimmune inflammatory phenotypes Juzenas, S.; Huebenthal, M.; Zeissig, S.; Struening, N.; Keller, A.; Schulte, D.; D'Amato, M.; Lindqvist, M.; Kupcinskas, J.; Schreiber, S.; Halfvarson, J.; Hemmrich-Stanisak, G.; Franke, A. Share Save
A comprehensive, cell specific microRNA catalogue of human peripheral blood Juzenas, Simonas; Venkatesh, Geetha; Huebenthal, Matthias; Hoeppner, Marc P.; Du, Zhipei Gracie; Paulsen, Maren; Rosenstiel, Philip; Senger, Philipp; Hofmann-Apitius, Martin; Keller, Andreas; Kupcinskas, Limas; Franke, Andre; Hemmrich-Stanisak, Georg Share Save
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