Artem Lysenko - Publications, H-index & Citations

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Artem Lysenko

university of tokyo

17H-index

71Paper Count

1.6KCitation Count

Published Papers 19

Publication Date

Voltage-Matrix Nanopore Profiling for the Discrimination of Protein Mixtures

Chem. Sci.

IF7.4

2025-09-24

OAAI

Ryo Akita; Artem Lysenko; Keith Anthony Boroevich; Tatsuya Yokota; Daiki Kawai; Ryo Iizuka; Tatsuhiko Tsunoda; Sotaro Uemura

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scHDeepInsight: a hierarchical deep learning framework for precise immune cell annotation in single-cell RNA-seq data

BRIEFINGS IN BIOINFORMATICS

IF7.7

2025-09-01

PREAI

Jia, Shangru; Lysenko, Artem; Boroevich, Keith A.; Sharma, Alok; Tsunoda, Tatsuhiko

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VBayesMM: variational Bayesian neural network to prioritize important relationships of high-dimensional microbiome multiomics data

BRIEFINGS IN BIOINFORMATICS

IF7.7

2025-07-01

OAAI

Dang, Tung; Lysenko, Artem; Boroevich, Keith A.; Tsunoda, Tatsuhiko

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Enhanced analysis of tabular data through Multi-representation DeepInsight

SCIENTIFIC REPORTS

IF3.9

2024-06-04

OAAI

Sharma, Alok; Lopez, Yosvany; Jia, Shangru; Lysenko, Artem; Boroevich, Keith A.; Tsunoda, Tatsuhiko

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scDeepInsight: a supervised cell-type identification method for scRNA-seq data with deep learning

BRIEFINGS IN BIOINFORMATICS

IF7.7

2023-07-31

OAAI

Jia, Shangru; Lysenko, Artem; Boroevich, Keith A.; Sharma, Alok; Tsunoda, Tatsuhiko

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DeepInsight-3D architecture for anti-cancer drug response prediction with deep-learning on multi-omics

SCIENTIFIC REPORTS

IF3.9

2023-02-11

OAAI

Sharma, Alok; Lysenko, Artem; Boroevich, Keith A.; Tsunoda, Tatsuhiko

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DeepFeature: feature selection in nonimage data using convolutional neural network

BRIEFINGS IN BIOINFORMATICS

IF7.7

2021-08-06

OAAI

Sharma, Alok; Lysenko, Artem; Boroevich, Keith A.; Vans, Edwin; Tsunoda, Tatsuhiko

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Cerebrospinal fluid proteome shows disrupted neuronal development in multiple sclerosis

SCIENTIFIC REPORTS

IF3.9

2021-02-18

OAAI

Mosleth, Ellen F.; Vedeler, Christian Alexander; Liland, Kristian Hovde; McLeod, Anette; Bringeland, Gerd Haga; Kroondijk, Liesbeth; Berven, Frode Steingrimsen; Lysenko, Artem; Rawlings, Christopher J.; Eid, Karim El-Hajj; Opsahl, Jill Anette; Gjertsen, Bjorn Tore; Myhr, Kjell-Morten; Gavasso, Sonia

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PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets

FRONTIERS IN MICROBIOLOGY

IF4.5

2019-12-06

OAAI

Janowska-Sejda, Elzbieta I.; Lysenko, Artem; Urban, Martin; Rawlings, Chris; Tsoka, Sophia; Hammond-Kosack, Kim E.

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HseSUMO: Sumoylation site prediction using half-sphere exposures of amino acids residues

BMC GENOMICS

IF3.7

2019-04-18

OAAI

Sharma, Alok; Lysenko, Artem; Lopez, Yosvany; Dehzangi, Abdollah; Sharma, Ronesh; Reddy, Hamendra; Sattar, Abdul; Tsunoda, Tatsuhiko

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An integrative machine learning approach for prediction of toxicity-related drug safety

LIFE SCIENCE ALLIANCE

IF2.9

2018-11-28

OAAI

Lysenko, Artem; Sharma, Alok; Boroevich, Keith A.; Tsunoda, Tatsuhiko

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Navigating the disease landscape: knowledge representations for contextualizing molecular signatures

BRIEFINGS IN BIOINFORMATICS

IF7.7

2018-04-19

OAAI

Saqi, Mansoor; Lysenko, Artem; Guo, Yi-Ke; Tsunoda, Tatsuhiko; Auffray, Charles

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Arete - candidate gene prioritization using biological network topology with additional evidence types

BIODATA MINING

IF6.1

2017-07-06

OAAI

Lysenko, Artem; Boroevich, Keith Anthony; Tsunoda, Tatsuhiko

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Representing and querying disease networks using graph databases

BIODATA MINING

IF6.1

2016-07-25

OAAI

Lysenko, Artem; Roznovat, Irina A.; Saqi, Mansoor; Mazein, Alexander; Rawlings, Christopher J.; Auffray, Charles

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Transcriptome and Metabolite Profiling of the Infection Cycle of Zymoseptoria tritici on Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition

PLANT PHYSIOLOGY

IF6.9

2015-01-16

227

OAAI

Rudd, Jason J.; Kanyuka, Kostya; Hassani-Pak, Keywan; Derbyshire, Mark; Andongabo, Ambrose; Devonshire, Jean; Lysenko, Artem; Saqi, Mansoor; Desai, Nalini M.; Powers, Stephen J.; Hooper, Juliet; Ambroso, Linda; Bharti, Arvind; Farmer, Andrew; Hammond-Kosack, Kim E.; Dietrich, Robert A.; Courbot, Mikael

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A novel approach to identify genes that determine grain protein deviation in cereals

PLANT BIOTECHNOLOGY JOURNAL

IF10.5

2014-11-14

OAAI

Mosleth, Ellen F.; Wan, Yongfang; Lysenko, Artem; Chope, Gemma A.; Penson, Simon P.; Shewry, Peter R.; Hawkesford, Malcolm J.

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Genetical and Comparative Genomics of Brassica under Altered Ca Supply Identifies Arabidopsis Ca-Transporter Orthologs

PLANT CELL

IF11.6

2014-07-31

OAAI

Graham, Neil S.; Hammond, John P.; Lysenko, Artem; Mayes, Sean; Lochlainn, Seosamh O.; Blasco, Bego; Bowen, Helen C.; Rawlings, Chris J.; Rios, Juan J.; Welham, Susan; Carion, Pierre W. C.; Dupuy, Lionel X.; King, Graham J.; White, Philip J.; Broadley, Martin R.

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Data integration for plant genomics-exemplars from the integration of Arabidopsis thaliana databases (vol 10, pg 676, 2009)

BRIEFINGS IN BIOINFORMATICS

IF7.7

2010-03-10

OAAI

Lysenko, Artem; Hindle, Matthew Morritt; Taubert, Jan; Saqi, Mansoor; Rawlings, Christopher John

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Data integration for plant genomics-exemplars from the integration of Arabidopsis thaliana databases

BRIEFINGS IN BIOINFORMATICS

IF7.7

2009-11-20

OAAI

Lysenko, Atem; Hindle, Matthew Morritt; Taubert, Jan; Saqi, Mansoor; Rawlings, Christopher John

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Research Directions