Not logged in Cytoscape Web: bringing network biology to the browser Ono, Keiichiro; Fong, Dylan; Gao, Chengzhan; Churas, Christopher; Pillich, Rudolf; Lenkiewicz, Joanna; Pratt, Dexter; Pico, Alexander R.; Hanspers, Kristina; Xin, Yihang; Morris, John; Kucera, Mike; Franz, Max; Lopes, Christian; Bader, Gary; Ideker, Trey Share Save
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Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing Maier, Andreas; Hartung, Michael; Abovsky, Mark; Adamowicz, Klaudia; Bader, Gary D.; Baier, Sylvie; Blumenthal, David B.; Chen, Jing; Elkjaer, Maria L.; Garcia-Hernandez, Carlos; Helmy, Mohamed; Hoffmann, Markus; Jurisica, Igor; Kotlyar, Max; Lazareva, Olga; Levi, Hagai; List, Markus; Lobentanzer, Sebastian; Loscalzo, Joseph; Malod-Dognin, Noel; Manz, Quirin; Matschinske, Julian; Mee, Miles; Oubounyt, Mhaned; Pastrello, Chiara; Pico, Alexander R.; Pillich, Rudolf T.; Poschenrieder, Julian M.; Pratt, Dexter; Przulj, Natasa; Sadegh, Sepideh; Saez-Rodriguez, Julio; Sarkar, Suryadipto; Shaked, Gideon; Shamir, Ron; Trummer, Nico; Turhan, Ugur; Wang, Rui-Sheng; Zolotareva, Olga; Baumbach, Jan Share Save
A global multiscale map of protein assemblies from integration of protein interactions and images Schaffer, Leah V.; Hu, Mengzhou; Huttlin, Edward L.; Qian, Gege; Pal, Abantika; Soni, Neelesh; Latham, Andrew; Vaites, Laura Pontano; Trang Le; Qin, Yue; Churas, Christopher; Pratt, Dexter; Echeverria, Ignacia; Sali, Andrej; Harper, J. Wade; Gygi, Steven P.; Lundberg, Emma; Ideker, Trey Share Save
A map of osteosarcoma cell architecture reveals convergence of pediatric cancer mutations on protein assemblies Hu, Mengzhou; Schaffer, Leah V.; Huttlin, Edward L.; Qian, Gege; Latham, Andrew; Pal, Abantika; Vaites, Laura Pontano; Le, Trang; Qin, Yue; Churas, Christopher; Pratt, Dexter; Bachelder, Robin; Zage, Peter; Echeverria, Ignacia; Sali, Andrej; Harper, J. Wade; Gygi, Steven P.; Lundberg, Emma; Ideker, Trey Share Save
A multi-scale map of protein assemblies in the DNA damage response Kratz, Anton; Kim, Minkyu; Kelly, Marcus R.; Zheng, Fan; Koczor, Christopher A.; Li, Jianfeng; Ono, Keiichiro; Qin, Yue; Churas, Christopher; Chen, Jing; Pillich, Rudolf T.; Park, Jisoo; Modak, Maya; Collier, Rachel; Licon, Kate; Pratt, Dexter; Sobol, Robert W.; Krogan, Nevan J.; Ideker, Trey Share Save
Mapping the common gene networks that underlie related diseases Rosenthal, Sara Brin; Wright, Sarah N.; Liu, Sophie; Churas, Christopher; Chilin-Fuentes, Daisy; Chen, Chi-Hua; Fisch, Kathleen M.; Pratt, Dexter; Kreisberg, Jason F.; Ideker, Trey Share Save
A BioID-Derived Proximity Interactome for SARS-CoV-2 Proteins May, Danielle G.; Martin-Sancho, Laura; Anschau, Valesca; Liu, Sophie; Chrisopulos, Rachel J.; Scott, Kelsey L.; Halfmann, Charles T.; Pena, Ramon Diaz; Pratt, Dexter; Campos, Alexandre R.; Roux, Kyle J. Share Save
Deep distributed computing to reconstruct extremely large lineage trees Konno, Naoki; Kijima, Yusuke; Watano, Keito; Ishiguro, Soh; Ono, Keiichiro; Tanaka, Mamoru; Mori, Hideto; Masuyama, Nanami; Pratt, Dexter; Ideker, Trey; Iwasaki, Wataru; Yachie, Nozomu Share Save
Functional landscape of SARS-CoV-2 cellular restriction Martin-Sancho, Laura; Lewinski, Mary K.; Pache, Lars; Stoneham, Charlotte A.; Yin, Xin; Becker, Mark E.; Pratt, Dexter; Churas, Christopher; Rosenthal, Sara B.; Liu, Sophie; Weston, Stuart; De Jesus, Paul D.; O'Neill, Alan M.; Gounder, Anshu P.; Nguyen, Courtney; Pu, Yuan; Curry, Heather M.; Oom, Aaron L.; Miorin, Lisa; Rodriguez-Frandsen, Ariel; Zheng, Fan; Wu, Chunxiang; Xiong, Yong; Urbanowski, Matthew; Shaw, Megan L.; Chang, Max W.; Benner, Christopher; Hope, Thomas J.; Frieman, Matthew B.; Garcia-Sastre, Adolfo; Ideker, Trey; Hultquist, Judd F.; Guatelli, John; Chanda, Sumit K. Share Save
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Using physical, genetic and integrated cancer cell maps to investigate head and neck cancer and breast cancer Kreisberg, Jason F.; Zheng, Fan; Fong, Samson; Kuenzi, Brent M.; Ford, Kyle; Swaney, Danielle; Kim, Minkyu; Park, Jisoo; Wang, Zhiyong; Pratt, Dexter; Jura, Natalia; Gutkind, Silvio; Mali, Prashant; Krogan, Nevan; Ideker, Trey Share Save
Dynamic post-translational modification profiling of Mycobacterium tuberculosis-infected primary macrophages Budzik, Jonathan M.; Swaney, Danielle L.; Jimenez-Morales, David; Johnson, Jeffrey R.; Garelis, Nicholas E.; Repasy, Teresa; Roberts, Allison W.; Popov, Lauren M.; Parry, Trevor J.; Pratt, Dexter; Idekee, Trey; Krogan, Nevan J.; Cox, Jeffery S. Share Save
DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies Yu, Michael Ku; Ma, Jianzhu; Ono, Keiichiro; Zheng, Fan; Fong, Samson H.; Gary, Aaron; Chen, Jing; Demchak, Barry; Pratt, Dexter; Ideker, Trey Share Save
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NDEx, the Network Data Exchange Pratt, Dexter; Chen, Jing; Welker, David; Rivas, Ricardo; Pillich, Rudolf; Rynkov, Vladimir; Ono, Keiichiro; Miello, Carol; Hicks, Lyndon; Szalma, Sandor; Stojmirovic, Aleksandar; Dobrin, Radu; Braxenthaler, Michael; Kuentzer, Jan; Demchak, Barry; Ideker, Trey Share Save
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