arrow
Back
C

Christine Orengo

deepmind

37H-index
159Paper Count
1.1WCitation Count
Published Papers 31
Publication Date
Leveraging protein language models and a scoring function for indel characterization and transfer learning
err2025-11-26
err0
errOAAI
errOriol Gracia Carmona; Vilde Leipart; Gro V. Amdam; Christine Orengo; Franca Fraternali
errShare
errSave
AlphaFold Protein Structure Database 2025: a redesigned interface and updated structural coverage
err2025-11-01
err2
PREAI
errBertoni, Damian; Tsenkov, Maxim; Magana, Paulyna; Nair, Sreenath; Pidruchna, Ivanna; Querino Lima Afonso, Marcelo; Midlik, Adam; Paramval, Urmila; Lawal, Dare; Tanweer, Ahsan; Last, Meera; Patel, Risha; Laydon, Agata; Lasecki, Dariusz; Dietrich, Nick; Tomlinson, Hamish; ZIDek, Augustin; Green, Tim; Kovalevskiy, Oleg; Lau, Andy; Kandathil, Shaun; Bordin, Nicola; Sillitoe, Ian; Mirdita, Milot; Jones, David; Orengo, Christine; Steinegger, Martin; Fleming, Jennifer R.; Velankar, Sameer
errShare
errSave
Assessing structure-function impacts on Vitellogenin by leveraging allelic variant found in honey bee subspecies Apis mellifera mellifera
err2025-07-29
err0
errOAAI
errVilde Leipart; Oriol Gracia Carmona; Christine Orengo; Franca Fraternali; Gro V. Amdam
errShare
errSave
GOBeacon: An ensemble model for protein function prediction enhanced by contrastive learning
err2025-06-22
err0
errOAAI
errWeining Lin; David Miller; Zhonghui Gu; Christine Orengo
errShare
errSave
CATH v4.4: major expansion of CATH by experimental and predicted structural data
err2024-11-20
err1
errOAAI
errWaman, Vaishali P.; Bordin, Nicola; Lau, Andy; Kandathil, Shaun; Wells, Jude; Miller, David; Velankar, Sameer; Jones, David T.; Sillitoe, Ian; Orengo, Christine
errShare
errSave
Enhancing missense variant pathogenicity prediction with protein language models using VariPred
err2024-04-07
err2
errOAAI
errLin, Weining; Wells, Jude; Wang, Zeyuan; Orengo, Christine; Martin, Andrew C. R.
errShare
errSave
Broad functional profiling of fission yeast proteins using phenomics and machine learning
err2023-10-03
err11
errOAAI
errRodriguez-Lopez, Maria; Bordin, Nicola; Lees, Jon; Scholes, Harry; Hassan, Shaimaa; Saintain, Quentin; Kamrad, Stephan; Orengo, Christine; Baehler, Juerg
errShare
errSave
Novel machine learning approaches revolutionize protein knowledge
err2023-04-01
err34
errOAAI
errBordin, Nicola; Dallago, Christian; Heinzinger, Michael; Kim, Stephanie; Littmann, Maria; Rauer, Clemens; Steinegger, Martin; Rost, Burkhard; Orengo, Christine
errShare
errSave
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms
err2023-02-08
err38
errOAAI
errBordin, Nicola; Sillitoe, Ian; Nallapareddy, Vamsi; Rauer, Clemens; Lam, Su Datt; Waman, Vaishali P.; Sen, Neeladri; Heinzinger, Michael; Littmann, Maria; Kim, Stephanie; Velankar, Sameer; Steinegger, Martin; Rost, Burkhard; Orengo, Christine
errShare
errSave
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
err2022-11-30
err6
errOAAI
errVaradi, Mihaly; Nair, Sreenath; Sillitoe, Ian; Tauriello, Gerardo; Anyango, Stephen; Bienert, Stefan; Borges, Clemente; Deshpande, Mandar; Green, Tim; Hassabis, Demis; Hatos, Andras; Hegedus, Tamas; Hekkelman, Maarten L.; Joosten, Robbie; Jumper, John; Laydon, Agata; Molodenskiy, Dmitry; Piovesan, Damiano; Salladini, Edoardo; Salzberg, Steven L.; Sommer, Markus J.; Steinegger, Martin; Suhajda, Erzsebet; Svergun, Dmitri; Tenorio-Ku, Luiggi; Tosatto, Silvio; Tunyasuvunakool, Kathryn; Waterhouse, Andrew Mark; Zidek, Augustin; Schwede, Torsten; Orengo, Christine; Velankar, Sameer
errShare
errSave
InterPro in 2022
err2022-11-09
err1.1K
errOAAI
errPaysan-Lafosse, Typhaine; Blum, Matthias; Chuguransky, Sara; Grego, Tiago; Pinto, Beatriz Lazaro; Salazar, Gustavo A.; Bileschi, Maxwell L.; Bork, Peer; Bridge, Alan; Colwell, Lucy; Gough, Julian; Haft, Daniel H.; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Orengo, Christine A.; Pandurangan, Arun P.; Rivoire, Catherine; Sigrist, Christian J. A.; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Bateman, Alex
errShare
errSave
Contrastive learning on protein embeddings enlightens midnight zone
err2022-06-11
err45
errOAAI
errHeinzinger, Michael; Littmann, Maria; Sillitoe, Ian; Bordin, Nicola; Orengo, Christine; Rost, Burkhard
errShare
errSave
Transmission of SARS-CoV-2 from humans to animals and potential host adaptation
err2022-05-27
err82
errOAAI
errTan, Cedric C. S.; Lam, Su Datt; Richard, Damien; Owen, Christopher J.; Berchtold, Dorothea; Orengo, Christine; Nair, Meera Surendran; Kuchipudi, Suresh, V; Kapur, Vivek; van Dorp, Lucy; Balloux, Francois
errShare
errSave
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
err2018-11-06
err1.1K
errOAAI
errMitchell, Alex L.; Attwood, Teresa K.; Babbitt, Patricia C.; Blum, Matthias; Bork, Peer; Bridge, Alan; Brown, Shoshana D.; Chang, Hsin-Yu; El-Gebali, Sara; Fraser, Matthew I.; Gough, Julian; Haft, David R.; Huang, Hongzhan; Letunic, Ivica; Lopez, Rodrigo; Luciani, Aurelien; Madeira, Fabio; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine; Pandurangan, Arun P.; Paysan-Lafosse, Typhaine; Pesseat, Sebastien; Potter, Simon C.; Qureshi, Matloob A.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna J.; Rivoire, Catherine; Salazar, Gustavo A.; Sangrador-Vegas, Amaia; Sigrist, Christian J. A.; Sillitoe, Ian; Sutton, Granger G.; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Yong, Siew-Yit; Finn, Robert D.
errShare
errSave
Comprehensive analysis of long noncoding RNA expression in dorsal root ganglion reveals cell-type specificity and dysregulation after nerve injury
errPAIN
IF5.5
err2018-10-16
err42
errOAAI
errBaskozos, Georgios; Dawes, John M.; Austin, Jean S.; Antunes-Martins, Ana; McDermott, Lucy; Clark, Alex J.; Trendafilova, Teodora; Lees, Jon G.; McMahon, Stephen B.; Mogil, Jeffrey S.; Orengo, Christine; Bennett, David L.
errShare
errSave
Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells
err2018-06-06
err61
errOAAI
errTsuchiya, Yugo; Zhyvoloup, Alexander; Bakovic, Jovana; Thomas, Naam; Yu, Bess Yi Kun; Das, Sayoni; Orengo, Christine; Newell, Clare; Ward, John; Saladino, Giorgio; Comitani, Federico; Gervasio, Francesco L.; Malanchuk, Oksana M.; Khoruzhenko, Antonina I.; Filonenko, Valeriy; Peak-Chew, Sew Yeu; Skehel, Mark; Gout, Ivan
errShare
errSave
The Pain in Neuropathy Study (PiNS): a cross-sectional observational study determining the somatosensory phenotype of painful and painless diabetic neuropathy
errPAIN
IF5.5
err2016-05-01
err239
errOAAI
errThemistocleous, Andreas C.; Ramirez, Juan D.; Shillo, Pallai R.; Lees, Jonathan G.; Selvarajah, Dinesh; Orengo, Christine; Tesfaye, Solomon; Rice, Andrew S. C.; Bennett, David L. H.
errShare
errSave
Sensory, psychological, and metabolic dysfunction in HIV-associated peripheral neuropathy: A cross-sectional deep profiling study
errPAIN
IF5.5
err2014-09-01
err77
errOAAI
errPhillips, Tudor J. C.; Brown, Matthew; Ramirez, Juan D.; Perkins, James; Woldeamanuel, Yohannes W.; Williams, Amanda C. de C.; Orengo, Christine; Bennett, David L. H.; Bodi, Istvan; Cox, Sarah; Maier, Christoph; Krumova, Elena K.; Rice, Andrew S. C.
errShare
errSave
Axonal neuregulin 1 is a rate limiting but not essential factor for nerve remyelination
errBRAIN
IF11.7
err2013-06-24
err82
errOAAI
errFricker, Florence R.; Antunes-Martins, Ana; Galino, Jorge; Paramsothy, Remi; La Russa, Federica; Perkins, James; Goldberg, Rebecca; Brelstaff, Jack; Zhu, Ning; McMahon, Stephen B.; Orengo, Christine; Garratt, Alistair N.; Birchmeier, Carmen; Bennett, David L. H.
errShare
errSave