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Metagenome-assembled-genomes recovered from the Arctic drift expedition MOSAiC Boulton, William; Salamov, Asaf; Grigoriev, Igor V.; Calhoun, Sara; Labutti, Kurt; Barry, Kerrie; Fong, Allison A.; Hoppe, Clara J. M.; Metfies, Katja; Oetjen, Kersten; Eggers, Sarah Lena; Muller, Oliver; Gardner, Jessie; Granskog, Mats A.; Torstensson, Anders; Oggier, Marc; Larsen, Aud; Bratbak, Gunnar; Toseland, Andrew; Leggett, Richard M.; Moulton, Vincent Share Save
Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti Nybo, J. L.; Vesth, T. C.; Theobald, S.; Frisvad, J. C.; Larsen, T. O.; Kjaerboelling, I.; Rothschild-Mancinelli, K.; Lyhne, E. K.; Barry, K.; Clum, A.; Yoshinaga, Y.; Ledsgaard, L.; Daum, C.; Lipzen, A.; Kuo, A.; Riley, R.; Mondo, S.; Labutti, K.; Haridas, S.; Pangalinan, J.; Salamov, A. A.; Simmons, B. A.; Magnuson, J. K.; Chen, J.; Drula, E.; Henrissat, B.; Wiebenga, A.; Lubbers, R. J. M.; Muller, A.; Gomes, A. C. dos Santos; Makela, M. R.; Stajich, J. E.; Grigorie, I., V; Mortensen, U. H.; Andersen, M. R. Share Save
Phylogeny, morphology, virulence, ecology, and host range of Ordospora pajunii (Ordosporidae), a microsporidian symbiont of Daphnia spp. Dziuba, Marcin K.; Mcintire, Kristina M.; Seto, Kensuke; Davenport, Elizabeth S.; Rogalski, Mary A.; Gowler, Camden D.; Baird, Emma; Vaandrager, Megan; Huerta, Cristian; Jaye, Riley; Corcoran, Fiona E.; Withrow, Alicia; Ahrendt, Steven; Salamov, Asaf; Nolan, Matt; Tejomurthula, Sravanthi; Barry, Kerrie; Grigoriev, Igor V.; James, Timothy Y.; Duffy, Meghan A. Share Save
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Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits Dort, E. N.; Layne, E.; Feau, N.; Butyaev, A.; Henrissat, B.; Martin, F. M.; Haridas, S.; Salamov, A.; Grigoriev, I. V.; Blanchette, M.; Hamelin, R. C. Share Save
A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera) Diesel, Jose; Molano, Gary; Montecinos, Gabriel J.; Deweese, Kelly; Calhoun, Sara; Kuo, Alan; Lipzen, Anna; Salamov, Asaf; Grigoriev, Igor V.; Reed, Daniel C.; Miller, Robert J.; Nuzhdin, Sergey V.; Alberto, Filipe Share Save
Terabase-Scale Coassembly of a Tropical Soil Microbiome Riley, Robert; Bowers, Robert M.; Camargo, Antonio Pedro; Campbell, Ashley; Egan, Rob; Eloe-Fadrosh, Emiley A.; Foster, Brian; Hofmeyr, Steven; Huntemann, Marcel; Kellom, Matthew; Kimbrel, Jeffrey A.; Oliker, Leonid; Yelick, Katherine; Pett-Ridge, Jennifer; Salamov, Asaf; Varghese, Neha J.; Clum, Alicia Share Save
An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi Hage, Hayat; Couillaud, Julie; Salamov, Asaf; Loussouarn-Yvon, Margot; Durbesson, Fabien; Ormeno, Elena; Grisel, Sacha; Duquesne, Katia; Vincentelli, Renaud; Grigoriev, Igor; Iacazio, Gilles; Rosso, Marie-Noelle Share Save
Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors Wang, Yan; Chang, Ying; Ortanez, Jericho; Pena, Jesus F.; Carter-House, Derreck; Reynolds, Nicole K.; Smith, Matthew E.; Benny, Gerald; Mondo, Stephen J.; Salamov, Asaf; Lipzen, Anna; Pangilinan, Jasmyn; Guo, Jie; LaButti, Kurt; Andreopolous, William; Tritt, Andrew; Keymanesh, Keykhosrow; Yan, Mi; Barry, Kerrie; Grigoriev, Igor, V; Spatafora, Joseph W.; Stajich, Jason E. Share Save
Two major chromosome evolution events with unrivaled conserved gene content in pomegranate Akparov, Zeynal; Hajiyeva, Sabina; Abbasov, Mehraj; Kaur, Sukhjiwan; Hamwieh, Aladdin; Alsamman, Alsamman M.; Hajiyev, Elchin; Babayeva, Sevda; Izzatullayeva, Vusala; Mustafayeva, Ziyafat; Mehdiyeva, Sabina; Mustafayev, Orkhan; Shahmuradov, Ilham; Kosarev, Peter; Solovyev, Victor; Salamov, Asaf; Jighly, Abdulqader Share Save
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae Dorrell, Richard G.; Kuo, Alan; Fussy, Zoltan; Richardson, Elisabeth H.; Salamov, Asaf; Zarevski, Nikola; Freyria, Nastasia J.; Ibarbalz, Federico M.; Jenkins, Jerry; Karlusich, Juan Jose Pierella; Steindorff, Andrei Stecca; Edgar, Robyn E.; Handley, Lori; Lail, Kathleen; Lipzen, Anna; Lombard, Vincent; McFarlane, John; Nef, Charlotte; Vanclova, Anna M. G. Novak; Peng, Yi; Plott, Chris; Potvin, Marianne; Vieira, Fabio Rocha Jimenez; Barry, Kerrie; de Vargas, Colomban; Henrissat, Bernard; Pelletier, Eric; Schmutz, Jeremy; Wincker, Patrick; Dacks, Joel B.; Bowler, Chris; Grigoriev, Igor, V; Lovejoy, Connie Share Save
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans Duncan, Anthony; Barry, Kerrie; Daum, Chris; Eloe-Fadrosh, Emiley; Roux, Simon; Schmidt, Katrin; Tringe, Susannah G.; Valentin, Klaus U.; Varghese, Neha; Salamov, Asaf; Grigoriev, Igor, V; Leggett, Richard M.; Moulton, Vincent; Mock, Thomas Share Save
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Co-cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates Brown, Jennifer L.; Swift, Candice L.; Mondo, Stephen J.; Seppala, Susanna; Salamov, Asaf; Singan, Vasanth; Henrissat, Bernard; Drula, Elodie; Henske, John K.; Lee, Samantha; LaButti, Kurt; He, Guifen; Yan, Mi; Barry, Kerrie; Grigoriev, Igor V.; O'Malley, Michelle A. Share Save
Persistence and plasticity in bacterial gene regulation Baumgart, Leo A.; Lee, Ji Eun; Salamov, Asaf; Dilworth, David J.; Na, Hyunsoo; Mingay, Matthew; Blow, Matthew J.; Zhang, Yu; Yoshinaga, Yuko; Daum, Chris G.; O'Malley, Ronan C. Share Save
Anaerobic gut fungi are an untapped reservoir of natural products Swift, Candice L.; Louie, Katherine B.; Bowen, Benjamin P.; Olson, Heather M.; Purvine, Samuel O.; Salamov, Asaf; Mondo, Stephen J.; Solomon, Kevin, V; Wright, Aaron T.; Northen, Trent R.; Grigoriev, Igor, V; Keller, Nancy P.; O'Malley, Michelle A. Share Save
Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi Chang, Ying; Rochon, D'Ann; Sekimoto, Satoshi; Wang, Yan; Chovatia, Mansi; Sandor, Laura; Salamov, Asaf; Grigoriev, Igor, V; Stajich, Jason E.; Spatafora, Joseph W. Share Save
PhycoCosm, a comparative algal genomics resource Grigoriev, Igor, V; Hayes, Richard D.; Calhoun, Sara; Kamel, Bishoy; Wang, Alice; Ahrendt, Steven; Dusheyko, Sergey; Nikitin, Roman; Mondo, Stephen J.; Salamov, Asaf; Shabalov, Igor; Kuo, Alan Share Save
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