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E

Elif Özkırımlı

roche informatics, f. hoffmann-la roche ag, kaiseraugst, switzerland

19H-index
78Paper Count
1.3KCitation Count
Published Papers 18
Publication Date
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Enhancing Severe Neutropenia Prediction: PKPD-Informed Labeling for Machine Learning Models Trained on Real-World Data
errClinical Pharmacology & Therapeutics
IF5.5
err2025-11-10
err0
errOAAI
errConor J O’Hanlon; Jonas Denck; Elif Ozkirimli; Stefanie Bendels; Candice Jamois; Clarisse Chavanne; Dirk Fey; Kimmo Porkka; Oscar Brück; Ken Wang
errShare
errSave
Machine-learning-based adverse drug event prediction from observational health data: A review
errDRUG DISCOVERY TODAY
IF7.5
err2023-09-01
err6
PREAI
errDenck, Jonas; Ozkirimli, Elif; Wang, Ken
errShare
errSave
Automatic Extraction of Medication Mentions from Tweets-Overview of the BioCreative VII Shared Task 3 Competition
errDATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
IF3.6
err2023-02-03
err3
errOAAI
errWeissenbacher, Davy; O'Connor, Karen; Rawal, Siddharth; Zhang, Yu; Tsai, Richard Tzong-Han; Miller, Timothy; Xu, Dongfang; Anderson, Carol; Liu, Bo; Han, Qing; Zhang, Jinfeng; Kulev, Igor; Koprue, Berkay; Rodriguez-Esteban, Raul; Ozkirimli, Elif; Ayach, Ammer; Roller, Roland; Piccolo, Stephen; Han, Peijin; Vydiswaran, V. G. Vinod; Tekumalla, Ramya; Banda, Juan M.; Bagherzadeh, Parsa; Bergler, Sabine; Silva, Joao F.; Almeida, Tiago; Martinez, Paloma; Rivera-Zavala, Renzo; Wang, Chen-Kai; Dai, Hong-Jie; Hernandez, Luis Alberto Robles; Gonzalez-Hernandez, Graciela
errShare
errSave
A Survey on Causal Discovery: Theory and Practice
errINTERNATIONAL JOURNAL OF APPROXIMATE REASONING
IF3
err2022-12-01
err28
errOAAI
errZanga, Alessio; Ozkirimli, Elif; Stella, Fabio
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errSave
Editorial: Machine Learning Methodologies to Study Molecular Interactions
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2021-12-03
err1
errOAAI
errYakimovich, Artur; Ozgur, Arzucan; Dogan, Tunca; Ozkirimli, Elif
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errSave
Labels in a haystack: Approaches beyond supervised learning in biomedical applications
errPATTERNS
IF7.4
err2021-12-01
err9
errOAAI
errYakimovich, Artur; Beaugnon, Anael; Huang, Yi; Ozkirimli, Elif
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errSave
Superior inhibition of influenza virus hemagglutinin-mediated fusion by indole-substituted spirothiazolidinones
errBIOORGANIC & MEDICINAL CHEMISTRY
IF3
err2020-01-01
err24
PREAI
errCihan-Ustundag, Gokce; Zopun, Muhammet; Vanderlinden, Evelien; Ozkirimli, Elif; Persoons, Leentje; Capan, Gultaze; Naesens, Lieve
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errSave
An evolutionarily conserved allosteric site modulates beta-lactamase activity
errJOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY
IF5.4
err2016-06-28
err19
errOAAI
errAvci, Fatma Gizem; Altinisik, Fatma Ece; Vardar Ulu, Didem; Ozkirimli Olmez, Elif; Akbulut, Berna Sariyar
errShare
errSave
Analysis of Membrane Translocation Simulations using Dimensionality Reduction
errBIOPHYSICAL JOURNAL
IF3.1
err2014-01-01
err0
errOAAI
errAlaybeyoglu, Begum; Ozkirimli, Elif
errShare
errSave
Aminopurine derivatives as putative SopE inhibitors
errJOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY
IF5.4
err2013-01-30
err2
errOAAI
errOzbuyukkaya, Gizem; Olmez, Elif Ozkirimli; Ulgen, Kutlu Ozergin
errShare
errSave
Effects of protonation state of Asp181 and position of active site water molecules on the conformation of PTP1B
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2013-01-15
err9
PREAI
errOzcan, Ahmet; Olmez, Elif Ozkirimli; Alakent, Burak
errShare
errSave
Communication Between an Allosteric Inhibitor Binding Site and the Active Site in Beta-Lactamase
errBIOPHYSICAL JOURNAL
IF3.1
err2012-01-01
err0
errOAAI
errMeneksedag, Deniz; Dogan, Asligul; Olmez, Elif Ozkirimli
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errSave
Bacterial Uptake of the Cell-Penetrating Peptide pVEC
errBIOPHYSICAL JOURNAL
IF3.1
err2012-01-01
err0
errOAAI
errAlaybeyoglu, Begum; Akdag, Ihsan Omur; Olmez, Elif Ozkirimli
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errSave
Dynamic Analysis of Phosphatase 1B WPD Loop
errBIOPHYSICAL JOURNAL
IF3.1
err2010-01-01
err1
errOAAI
errOzkaral, Burcu; Ozkan, Ahmet; Alakent, Burak; Ozkirimli, Elif
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errSave
Comparison of Three Perturbation Molecular Dynamics Methods for Modeling Conformational Transitions
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2009-04-09
err55
errOAAI
errHuang, He; Ozkirimli, Elif; Post, Carol Beth
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errSave
Dynamic Analysis of Beta-lactamase Ligand Recognition
errBIOPHYSICAL JOURNAL
IF3.1
err2009-02-01
err0
errOAAI
errKanlikilicer, Pinar; Budeyri, Nilay; Akbulut, Berna Sariyar; Hortacsu, Amable; Ozkirimli, Elif
errShare
errSave
The Role Of Dynamics On Binding Specificity And Promiscuity
errBIOPHYSICAL JOURNAL
IF3.1
err2009-02-01
err0
errOAAI
errOzkirimli, Elif; Keskin, Ozlem
errShare
errSave
Generation of an analog-sensitive syk tyrosine kinase for the study of signaling dynamics from the B cell antigen receptor
errJOURNAL OF BIOLOGICAL CHEMISTRY
IF3.9
err2007-11-01
err36
errOAAI
errOh, Hyunju; Ozkirimli, Elif; Shah, Kavita; Harrison, Marietta L.; Geahlen, Robert L.
errShare
errSave

Research Directions

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Co-authors
Cooperation Journals
K
Kimmo Porkka
H-index: 69 · Papers: 642
R
Robert L. Geahlen
H-index: 60 · Papers: 192
L
Lieve Naesens
H-index: 57 · Papers: 420
Ö
Özlem Keskin
H-index: 56 · Papers: 293
K
Kavita Shah
H-index: 48 · Papers: 168
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