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Bérénice Batut

cnrs, inserm, inrae, cea and ifb

18H-index
165Paper Count
7.4KCitation Count
Published Papers 15
Publication Date
Community-curated Galaxy interfaces with the Galaxy Labs Engine
err2026-04-08
err0
errOAAI
errCameron J Hyde; Anna Syme; Bérénice Batut; Paul F Zierep; Winnie Mok; Wendi A Bacon; Gareth R Price; null
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Clouds influence the functioning of airborne microorganisms
err2025-03-06
err1
errOAAI
errPeguilhan, Raphaelle; Rossi, Florent; Joly, Muriel; Nasr, Engy; Batut, Berenice; Enault, Francois; Ervens, Barbara; Amato, Pierre
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An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond ( vol 18, e0293879, 2023)
err2025-02-20
err0
errOAAI
errWilliams, Jason J.; Tractenberg, Rochelle E.; Batut, Berenice; Becker, Erin A.; Brown, Anne M.; Burke, Melissa L.; Busby, Ben; Cooch, Nisha K.; Dillman, Allissa A.; Donovan, Samuel S.; Doyle, Maria A.; van Gelder, Celia W. G.; Hall, Christina R.; Hertweck, Kate L.; Jordan, Kari L.; Jungck, John R.; Latour, Ainsley R.; Lindvall, Jessica M.; Lloret-Llinares, Marta; Mcdowell, Gary S.; Morris, Rana; Mourad, Teresa; Nisselle, Amy; Ordonez, Patricia; Paladin, Lisanna; Palagi, Patricia M.; Sukhai, Mahadeo A.; Teal, Tracy K.; Woodley, Louise
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PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
err2025-01-01
err0
errOAAI
errNasr, Engy; Henger, Anna; Gruning, Bjorn; Zierep, Paul; Batut, Berenice
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Integrative meta-omics in Galaxy and beyond
err2023-07-07
err5
errOAAI
errSchiml, Valerie C.; Delogu, Francesco; Kumar, Praveen; Kunath, Benoit; Batut, Berenice; Mehta, Subina; Johnson, James E.; Gruening, Bjoern; Pope, Phillip B.; Jagtap, Pratik D.; Griffin, Timothy J.; Arntzen, Magnus O.
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
err2022-04-21
err532
errOAAI
errOstrovsky, Alexander E.; Mahmoud, Alexandru; Lonie, Andrew J.; Syme, Anna; Fouilloux, Anne; Bretaudeau, Anthony; Nekrutenko, Anton; Kumar, Anup; Eschenlauer, Arthur C.; DeSanto, Assunta D.; Guerler, Aysam; Serrano-Solano, Beatriz; Batut, Berenice; Gruening, Bjoern A.; Langhorst, Bradley W.; Carr, Bridget; Raubenolt, Bryan A.; Hyde, Cameron J.; Bromhead, Catherine J.; Barnett, Christopher B.; Royaux, Coline; Gallardo, Cristobal; Blankenberg, Daniel; Fornika, Daniel J.; Baker, Dannon; Bouvier, Dave; Clements, Dave; Morais, David A. de Lima; Tabernero, David Lopez; Lariviere, Delphine; Nasr, Engy; Afgan, Enis; Zambelli, Federico; Heyl, Florian; Psomopoulos, Fotis; Coppens, Frederik; Price, Gareth R.; Cuccuru, Gianmauro; Le Corguille, Gildas; Von Kuster, Greg; Akbulut, Gulsum Gudukbay; Rasche, Helena; Hans-Rudolf, Hotz; Eguinoa, Ignacio; Makunin, Igor; Ranawaka, Isuru J.; Taylor, James P.; Joshi, Jayadev; Hillman-Jackson, Jennifer; Goecks, Jeremy; Chilton, John M.; Kamali, Kaivan; Suderman, Keith; Poterlowicz, Krzysztof; Yvan, Le Bras; Lopez-Delisle, Lucille; Sargent, Luke; Bassetti, Madeline E.; Tangaro, Marco Antonio; van den Beek, Marius; Cech, Martin; Bernt, Matthias; Fahrner, Matthias; Tekman, Mehmet; Foell, Melanie C.; Schatz, Michael C.; Crusoe, Michael R.; Roncoroni, Miguel; Kucher, Natalie; Coraor, Nate; Stoler, Nicholas; Rhodes, Nick; Soranzo, Nicola; Pinter, Niko; Goonasekera, Nuwan A.; Moreno, Pablo A.; Videm, Pavankumar; Melanie, Petera; Mandreoli, Pietro; Jagtap, Pratik D.; Gu, Qiang; Weber, Ralf J. M.; Lazarus, Ross; Vorderman, Ruben H. P.; Hiltemann, Saskia; Golitsynskiy, Sergey; Garg, Shilpa; Bray, Simon A.; Gladman, Simon L.; Leo, Simone; Mehta, Subina P.; Griffin, Timothy J.; Jalili, Vahid; Yves, Vandenbrouck; Wen, Victor; Nagampalli, Vijay K.; Bacon, Wendi A.; de Koning, Willem; Maier, Wolfgang; Briggs, Peter J.
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A single-cell RNA-sequencing training and analysis suite using the Galaxy framework
err2020-10-20
err9
errOAAI
errTekman, Mehmet; Batut, Berenice; Ostrovsky, Alexander; Antoniewski, Christophe; Clements, Dave; Ramirez, Fidel; Etherington, Graham J.; Hotz, Hans-Rudolf; Scholtalbers, Jelle; Manning, Jonathan R.; Bellenger, Lea; Doyle, Maria A.; Heydarian, Mohammad; Huang, Ni; Soranzo, Nicola; Moreno, Pablo; Mautner, Stefan; Papatheodorou, Irene; Nekrutenko, Anton; Taylor, James; Blankenberg, Daniel; Backofen, Rolf; Gruening, Bjoern
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Genome Evolution: Mutation Is the Main Driver of Genome Size in Prokaryotes
err2020-10-01
err7
errOAAI
errMarais, Gabriel A. B.; Batut, Berenice; Daubin, Vincent
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The RNA workbench 2.0: next generation RNA data analysis
err2019-05-10
err10
errOAAI
errFallmann, Joerg; Videm, Pavankumar; Bagnacani, Andrea; Batut, Berenice; Doyle, Maria A.; Klingstrom, Tomas; Eggenhofer, Florian; Stadler, Peter F.; Backofen, Rolf; Gruening, Bjoern
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Community-Driven Data Analysis Training for Biology
err2018-06-01
err115
errOAAI
errBatut, Berenice; Hiltemann, Saskia; Bagnacani, Andrea; Baker, Dannon; Bhardwaj, Vivek; Blank, Clemens; Bretaudeau, Anthony; Brillet-Gueguen, Loraine; Cech, Martin; Chilton, John; Clements, Dave; Doppelt-Azeroual, Olivia; Erxleben, Anika; Freeberg, Mallory Ann; Gladman, Simon; Hoogstrate, Youri; Hotz, Hans-Rudolf; Houwaart, Torsten; Jagtap, Pratik; Lariviere, Delphine; Le Corguille, Gildas; Manke, Thomas; Mareuil, Fabien; Ramirez, Fidel; Ryan, Devon; Sigloch, Florian Christoph; Soranzo, Nicola; Wolff, Joachim; Videm, Pavankumar; Wolfien, Markus; Wubuli, Aisanjiang; Yusuf, Dilmurat; Taylor, James; Backofen, Rolf; Nekrutenko, Anton; Gruening, Bjoern
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
err2018-05-22
err2.7K
errOAAI
errAfgan, Enis; Baker, Dannon; Batut, Berenice; van den Beek, Marius; Bouvier, Dave; Cech, Martin; Chilton, John; Clements, Dave; Coraor, Nate; Gruening, Bjoern A.; Guerler, Aysam; Hillman-Jackson, Jennifer; Hiltemann, Saskia; Jalili, Vahid; Rasche, Helena; Soranzo, Nicola; Goecks, Jeremy; Taylor, James; Nekrutenko, Anton; Blankenberg, Daniel
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ASaiM: a Galaxy-based framework to analyze microbiota data
err2018-05-15
err20
errOAAI
errBatut, Berenice; Gravouil, Kevin; Defois, Clemence; Hiltemann, Saskia; Brugere, Jean-Francois; Peyretaillade, Eric; Peyret, Pierre
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Environmental Pollutant Benzo[a] Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota
err2017-08-15
err55
errOAAI
errDefois, Clemence; Ratel, Jeremy; Denis, Sylvain; Batut, Berenice; Beugnot, Rejane; Peyretaillade, Eric; Engel, Erwan; Peyret, Pierre
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The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy
err2017-06-05
err27
errOAAI
errGruening, Bjoern A.; Fallmann, Joerg; Yusuf, Dilmurat; Will, Sebastian; Erxleben, Anika; Eggenhofer, Florian; Houwaart, Torsten; Batut, Berenice; Videm, Pavankumar; Bagnacani, Andrea; Wolfien, Markus; Lott, Steffen C.; Hoogstrate, Youri; Hess, Wolfgang R.; Wolkenhauer, Olaf; Hoffmann, Steve; Akalin, Altuna; Ohler, Uwe; Stadler, Peter F.; Backofen, Rolf
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Reductive genome evolution at both ends of the bacterial population size spectrum
err2014-09-15
err120
PREAI
errBatut, Berenice; Knibbe, Carole; Marais, Gabriel; Daubin, Vincent
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