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Sikkema, Lisa; Ramirez-Suastegui, Ciro; Strobl, Daniel C.; Gillett, Tessa E.; Zappia, Luke; Madissoon, Elo; Markov, Nikolay S.; Zaragosi, Laure-Emmanuelle; Ji, Yuge; Ansari, Meshal; Arguel, Marie-Jeanne; Apperloo, Leonie; Banchero, Martin; Becavin, Christophe; Berg, Marijn; Chichelnitskiy, Evgeny; Chung, Mei-i; Collin, Antoine; Gay, Aurore C. A.; Gote-Schniering, Janine; Kashani, Baharak Hooshiar; Inecik, Kemal; Jain, Manu; Kapellos, Theodore S.; Kole, Tessa M.; Leroy, Sylvie; Mayr, Christoph H.; Oliver, Amanda J.; von Papen, Michael; Peter, Lance; Taylor, Chase J.; Walzthoeni, Thomas; Xu, Chuan; Bui, Linh T.; De Donno, Carlo; Dony, Leander; Faiz, Alen; Guo, Minzhe; Gutierrez, Austin J.; Heumos, Lukas; Huang, Ni; Ibarra, Ignacio L.; Jackson, Nathan D.; Murthy, Preetish Kadur Lakshminarasimha; Lotfollahi, Mohammad; Tabib, Tracy; Talavera-Lopez, Carlos; Travaglini, Kyle J.; Wilbrey-Clark, Anna; Worlock, Kaylee B.; Yoshida, Masahiro; van den Berge, Maarten; Bosse, Yohan; Desai, Tushar J.; Eickelberg, Oliver; Kaminski, Naftali; Krasnow, Mark A.; Lafyatis, Robert; Nikolic, Marko Z.; Powell, Joseph E.; Rajagopal, Jayaraj; Rojas, Mauricio; Rozenblatt-Rosen, Orit; Seibold, Max A.; Sheppard, Dean; Shepherd, Douglas P.; Sin, Don D.; Timens, Wim; Tsankov, Alexander M.; Whitsett, Jeffrey; Xu, Yan; Banovich, Nicholas E.; Barbry, Pascal; Duong, Thu Elizabeth; Falk, Christine S.; Meyer, Kerstin B.; Kropski, Jonathan A.; Pe'er, Dana; Schiller, Herbert B.; Tata, Purushothama Rao; Schultze, Joachim L.; Teichmann, Sara A.; Misharin, Alexander, V; Nawijn, Martijn C.; Luecken, Malte D.; Theis, Fabian J.; Chen, Yuexin; Hagood, James S.; Agami, Ahmed; Horvath, Peter; Lundeberg, Joakim; Marquette, Charles-Hugo; Pryhuber, Gloria; Samakovlis, Chistos; Sun, Xin; Ware, Lorraine B.; Zhang, Kun Share Save Share Save Share Save Share Save A Python library for probabilistic analysis of single-cell omics dataGayoso, Adam; Lopez, Romain; Xing, Galen; Boyeau, Pierre; Amiri, Valeh Valiollah Pour; Hong, Justin; Wu, Katherine; Jayasuriya, Michael; Mehlman, Edouard; Langevin, Maxime; Liu, Yining; Samaran, Jules; Misrachi, Gabriel; Nazaret, Achille; Clivio, Oscar; Xu, Chenling; Ashuach, Tal; Gabitto, Mariano; Lotfollahi, Mohammad; Svensson, Valentine; Beltrame, Eduardo da Veiga; Kleshchevnikov, Vitalii; Talavera-Lopez, Carlos; Pachter, Lior; Theis, Fabian J.; Streets, Aaron; Jordan, Michael I.; Regier, Jeffrey; Yosef, Nir Share Save Divergent clonal differentiation trajectories establish CD8+ memory T cell heterogeneity during acute viral infections in humansMold, Jeff E.; Modolo, Laurent; Hard, Joanna; Zamboni, Margherita; Larsson, Anton J. M.; Stenudd, Moa; Eriksson, Carl-Johan; Durif, Ghislain; Stahl, Patrik L.; Borgstrom, Erik; Picelli, Simone; Reinius, Bjorn; Sandberg, Rickard; Reu, Pedro; Talavera-Lopez, Carlos; Andersson, Bjorn; Blom, Kim; Sandberg, Johan K.; Picard, Franck; Michaelsson, Jakob; Frisen, Jonas Share Save User-friendly, scalable tools and workflows for single-cell RNA-seq analysisMoreno, Pablo; Huang, Ni; Manning, Jonathan R.; Mohammed, Suhaib; Solovyev, Andrey; Polanski, Krzysztof; Bacon, Wendi; Chazarra, Ruben; Talavera-Lopez, Carlos; Doyle, Maria A.; Marnier, Guilhem; Gruening, Bjoern; Rasche, Helena; George, Nancy; Fexova, Silvie Korena; Alibi, Mohamed; Miao, Zhichao; Perez-Riverol, Yasset; Haeussler, Maximilian; Brazma, Alvis; Teichmann, Sarah; Meyer, Kerstin B.; Papatheodorou, Irene Share Save Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographicsMuus, Christoph; Luecken, Malte D.; Eraslan, Gokcen; Sikkema, Lisa; Waghray, Avinash; Heimberg, Graham; Kobayashi, Yoshihiko; Vaishnav, Eeshit Dhaval; Subramanian, Ayshwarya; Smillie, Christopher; Jagadeesh, Karthik A.; Duong, Elizabeth Thu; Fiskin, Evgenij; Triglia, Elena Torlai; Ansari, Meshal; Cai, Peiwen; Lin, Brian; Buchanan, Justin; Chen, Sijia; Shu, Jian; Haber, Adam L.; Chung, Hattie; Montoro, Daniel T.; Adams, Taylor; Aliee, Hananeh; Allon, Samuel J.; Andrusivova, Zaneta; Angelidis, Ilias; Ashenberg, Orr; Bassler, Kevin; Becavin, Christophe; Benhar, Inbal; Bergenstrahle, Joseph; Bergenstrahle, Ludvig; Bolt, Liam; Braun, Emelie; Bui, Linh T.; Callori, Steven; Chaffin, Mark; Chichelnitskiy, Evgeny; Chiou, Joshua; Conlon, Thomas M.; Cuoco, Michael S.; Cuomo, Anna S. E.; Deprez, Marie; Duclos, Grant; Fine, Denise; Fischer, David S.; Ghazanfar, Shila; Gillich, Astrid; Giotti, Bruno; Gould, Joshua; Guo, Minzhe; Gutierrez, Austin J.; Habermann, Arun C.; Harvey, Tyler; He, Peng; Hou, Xiaomeng; Hu, Lijuan; Hu, Yan; Jaiswal, Alok; Ji, Lu; Jiang, Peiyong; Kapellos, Theodoros S.; Kuo, Christin S.; Larsson, Ludvig; Leney-Greene, Michael A.; Lim, Kyungtae; Litvinukova, Monika; Ludwig, Leif S.; Lukassen, Soeren; Luo, Wendy; Maatz, Henrike; Madissoon, Elo; Mamanova, Lira; Manakongtreecheep, Kasidet; Leroy, Sylvie; Mayr, Christoph H.; Mbano, Ian M.; McAdams, Alexi M.; Nabhan, Ahmad N.; Nyquist, Sarah K.; Penland, Lolita; Poirion, Olivier B.; Poli, Sergio; Qi, CanCan; Queen, Rachel; Reichart, Daniel; Rosas, Ivan; Schupp, Jonas C.; Shea, Conor, V; Shi, Xingyi; Sinha, Rahul; Sit, Rene, V; Slowikowski, Kamil; Slyper, Michal; Smith, Neal P.; Sountoulidis, Alex; Strunz, Maximilian; Sullivan, Travis B.; Sun, Dawei; Talavera-Lopez, Carlos; Tan, Peng; Tantivit, Jessica; Travaglini, Kyle J.; Tucker, Nathan R.; Vernon, Katherine A.; Wadsworth, Marc H.; Waldman, Julia; Wang, Xiuting; Xu, Ke; Yan, Wenjun; Zhao, William; Ziegler, Carly G. K. Share Save Share Save SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genesSungnak, Waradon; Huang, Ni; Becavin, Christophe; Berg, Marijn; Queen, Rachel; Litvinukova, Monika; Talavera-Lopez, Carlos; Maatz, Henrike; Reichart, Daniel; Sampaziotis, Fotios; Worlock, Kaylee B.; Yoshida, Masahiro; Barnes, Josephine L. Share Save Share Save Share Save Expression Atlas update: from tissues to single cellsPapatheodorou, Irene; Moreno, Pablo; Manning, Jonathan; Fuentes, Alfonso Munoz-Pomer; George, Nancy; Fexova, Silvie; Fonseca, Nuno A.; Fullgrabe, Anja; Green, Matthew; Huang, Ni; Huerta, Laura; Lqbal, Haider; Jianu, Monica; Mohammed, Suhaib; Zhao, Lingyun; Jarnuczak, Andrew F.; Jupp, Simon; Marioni, John; Meyer, Kerstin; Petryszak, Robert; Medina, Cesar Augusto Prada; Talavera-Lopez, Carlos; Teichmann, Sarah; Vizcaino, Juan Antonio; Brazma, Alvis Share Save Share Save A cellular census of human lungs identifies novel cell states in health and in asthmaBraga, Felipe A. Vieira; Kar, Gozde; Berg, Marijn; Carpaij, Orestes A.; Polanski, Krzysztof; Simon, Lukas M.; Brouwer, Sharon; Gomes, Tomas; Hesse, Laura; Jiang, Jian; Fasouli, Eirini S.; Efremova, Mirjana; Vento-Tormo, Roser; Talavera-Lopez, Carlos; Jonker, Marnix R.; Affleck, Karen; Palit, Subarna; Strzelecka, Paulina M.; Firth, Helen V.; Mahbubani, Krishnaa T.; Cvejic, Ana; Meyer, Kerstin B.; Saeb-Parsy, Kourosh; Luinge, Marjan; Brandsma, Corry-Anke; Timens, Wim; Angelidis, Ilias; Strunz, Maximilian; Koppelman, Gerard H.; van Oosterhout, Antoon J.; Schiller, Herbert B.; Theis, Fabian J.; van den Berge, Maarten; Nawijn, Martijn C.; Teichmann, Sarah A. Share Save Share Save Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regenerationElewa, Ahmed; Wang, Heng; Talavera-Lopez, Carlos; Joven, Alberto; Brito, Goncalo; Kumar, Anoop; Hameed, L. Shahul; Penrad-Mobayed, May; Yao, Zeyu; Zamani, Neda; Abbas, Yamen; Abdullayev, Ilgar; Sandberg, Rickard; Grabherr, Manfred; Andersson, Bjorn; Simon, Andras Share Save Share Save 
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