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C

Chi‐Ping Day

national institutes of health

22H-index
170Paper Count
3.0KCitation Count
Published Papers 51
Publication Date
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Long-read sequencing of single cell-derived melanoma sublines reveals divergent and parallel genomic and epigenomic evolutionary trajectories
errNature Communications
IF15.7
err2026-07-16
err0
errOAAI
errYuelin Liu; Anton Goretsky; Ayse G. Keskus; Salem Malikic; Tanveer Ahmad; E. Michael Gertz; Farid Rashidi Mehrabadi; Michael Kelly; Maria O. Hernandez; Charlie Seibert; Juan Manuel Caravaca; Kayla Kline; Yongmei Zhao; Ying Wu; Biraj Shrestha; Bao Tran; Arindam Ghosh; Xiwen Cui; Antonella Sassano; Laksh Malik; Breeana Baker; Cornelis Blauwendraat; Kimberley J. Billingsley; Sandra Burkett; Eva Perez-Guijarro; Glenn Merlino; Erin K. Molloy; S. Cenk Sahinalp; Chi-Ping Day; Mikhail Kolmogorov
errShare
errSave
Beyond oncogenesis: the unexplored benefits of viruses in cancer immunity
errNature Reviews Cancer
IF66.8
err2026-06-18
err0
PREAI
errXin Wei Wang; Chi-Ping Day; Eugene V. Koonin
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errSave
CRISPR-Based Gene Dependency Screens Reveal Mechanism of BRAF Inhibitor Resistance in Anaplastic Thyroid Cancer
errMolecular Carcinogenesis
IF3.2
err2026-04-26
err0
errOAAI
errShawn Noronha; Yue Liu; Gaga Geneti; Haojian Li; Xiaolin Wu; David Sun; Vaibhavi Gujar; Takashi Furusawa; Alexei Lobanov; Maggie Cam; Lipika R. Pal; Nishanth U. Nair; Chi-Ping Day; Eytan Ruppin; Chandrayee Ghosh; Jiangnan Hu; Bhavishya Ramamoorthy; Suresh Kumar; Thorkell Andresson; King Chan; Maura O'Neill; Raj Chari; Yves Pommier; Jaydira Del Rivero; Urbain Weyemi; Electron Kebebew; Myriem Boufraqech
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errSave
Chimeric antigen receptor T cells against the IGHV4-34 B cell receptor specifically eliminate neoplastic and autoimmune B cells
errScience Translational Medicine
IF14.6
err2026-02-04
err0
PREAI
errIvan J. Cohen; Audrey C. Bochi-Layec; Jean Lemoine; Scott Jenks; Pedram Bayat; Ki Hyun Kim; Huiwu Zhao; Ositadimma Ugwuanyi; Federico Stella; Guido Ghilardi; Giulia Gabrielli; Sarah McCuaig; Anastasia Iatrou; Elisavet Vlachonikola; Maria Karipidou; Eleni Bouziani; David Espie; Ranjani Ramasubramanian; Andreas Agathangelidis; Aditya Bhosale; Luca Paruzzo; Giovanni Medico; Bronte Kolar; Regina Bugrovsky; Puneeth Guruprasad; Li-Ping Wang; Jaryse Harris; Evgeny Arons; Yunlin Zhang; Raymone Pajarillo; Portia A. Kreiger; Chi-Ping Day; S. Cenk Sahinalp; Chih Hao Wu; Alessia Santi; Bria Fulmer; Marcos Cases; Matthew B. Palmer; Patrizia Porazzi; E. John Wherry; Robert J. Kreitman; Enrico Tiacci; Sokratis A. Apostolidis; Edward M. Behrens; Vijay Bhoj; Ignacio Sanz; Giorgio Inghirami; Stephen J. Schuster; Paolo Ghia; Kostas Stamatopoulos; Marco Ruella
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errSave
GeneAgent: self-verification language agent for gene-set analysis using domain databases
errNature Methods
IF32.1
err2025-07-28
err0
errOAAI
errZhizheng Wang; Qiao Jin; Chih-Hsuan Wei; Shubo Tian; Po-Ting Lai; Qingqing Zhu; Chi-Ping Day; Christina Ross; Robert Leaman; Zhiyong Lu
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errSave
Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing
errNATURE BIOTECHNOLOGY
IF41.7
err2025-04-04
err1
PREAI
errKeskus, Ayse G.; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A.; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E.; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K.; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H.; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S.; Paten, Benedict; Kolmogorov, Mikhail
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errSave
Stochastic modeling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones
errCELL SYSTEMS
IF7.7
err2025-01-01
err1
errOAAI
errHirsch, M. G.; Pal, Soumitra; Mehrabadi, Farid Rashidi; Malikic, Salem; Gruen, Charli; Sassano, Antonella; Perez-Guijarro, Eva; Merlino, Glenn; Sahinalp, S. Cenk; Molloy, Erin K.; Day, Chi-Ping; Przytycka, Teresa M.
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errSave
RNA splicing alterations in the development of acquired MAPKi resistance in melanoma
errMOLECULAR CANCER THERAPEUTICS
IF5.5
err2024-11-14
err0
PREAI
errMukherjee, Sumit; Singh, Arashdeep; Joo, Hyunjeong; Patiyal, Sumeet; Kim, Hyungsoo; Pal, Lipika R.; Wang, Kun; Day, Chi-Ping; Ronai, Ze'ev A.; Ruppin, Eytan; Hannenhalli, Sridhar
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errSave
Dynamics of transcript alternations and differential splicing in the evolution of acquired MAPKi resistance in melanoma
errCANCER RESEARCH
IF16.6
err2024-04-05
err0
PREAI
errMukherjee, Sumit; Singh, Arashdeep; Joo, Hyunjeong; Patiyal, Sumeet; Kim, Hyungsoo; Pal, Lipika R.; Wang, Kun; Day, Chi-Ping; Ronai, Ze'ev A.; Ruppin, Eytan; Hannenhalli, Sridhar
errShare
errSave
Single-cell transcriptional analysis of embryonic melanoblasts pinpoints embryonic cell states that underlie targeted therapy and immune checkpoint blockade resistance
errCANCER RESEARCH
IF16.6
err2024-04-05
err0
PREAI
errGopalan, Vishaka; Wong, Chun Wai; Day, Chi-Ping; Perez-Guijarro, Eva; Lee, Maxwell P.; Jiang, Yuhong; Yang, Howard H.; Alves-Constantino, Maira; Sassano, Antonella; Smith, Cari; Simpson, Mark; Chin, Sung; Ebersole, Jessica; Gruen, Charli; Wu, Emily; Hannenhalli, Sridhar; Hurlstone, Adam; Merlino, Glenn; Marie, Kerrie
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errSave
Melanoma clonal subline analysis reveals genetic factors driving intra-tumor heterogeneity
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errKeskus, Ayse; Goretsky, Anton; Liu, Yuelin; Cui, Xiwen; Ahmad, Tanveer; Guijarro, Eva Perez; Bryant, Asher; Malloy, Erin; Malikic, Salem; Merlino, Glenn; Day, Chi-Ping; Sahinalp, Cenk; Kolmogorov, Mikhail
errShare
errSave
Noncoding RNA circuitry in melanoma onset, plasticity, and therapeutic response
errPHARMACOLOGY & THERAPEUTICS
IF12.5
err2023-08-01
err13
errOAAI
errGrafanaki, Katerina; Grammatikakis, Ioannis; Ghosh, Arin; Gopalan, Vishaka; Olgun, Gulden; Liu, Huaitian; Kyriakopoulos, George C.; Skeparnias, Ilias; Georgiou, Sophia; Stathopoulos, Constantinos; Hannenhalli, Sridhar; Merlino, Glenn; Marie, Kerrie L.; Day, Chi-Ping
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errSave
Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response
errNATURE COMMUNICATIONS
IF15.7
err2023-05-12
err13
errOAAI
errPagadala, Meghana; Sears, Timothy J.; Wu, Victoria H.; Perez-Guijarro, Eva; Kim, Hyo; Castro, Andrea; Talwar, James V.; Gonzalez-Colin, Cristian; Cao, Steven; Schmiedel, Benjamin J.; Goudarzi, Shervin; Kirani, Divya; Au, Jessica; Zhang, Tongwu; Landi, Teresa; Salem, Rany M.; Morris, Gerald P.; Harismendy, Olivier; Patel, Sandip Pravin; Alexandrov, Ludmil B.; Mesirov, Jill P.; Zanetti, Maurizio; Day, Chi-Ping; Fan, Chun Chieh; Thompson, Wesley K.; Merlino, Glenn; Gutkind, J. Silvio; Vijayanand, Pandurangan; Carter, Hannah
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errSave
Changing the culture for the future: time to take brain drain in academics seriously
errTRENDS IN CELL BIOLOGY
IF18.1
err2023-05-01
err0
errOAAI
errDay, Chi-Ping; Marie, Kerrie L.; Weeraratna, Ashani
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errSave
Interrogating subclonal mechanisms of immune evasion and immunotherapy resistance in melanoma
errCANCER RESEARCH
IF16.6
err2023-04-04
err0
PREAI
errChurch, Isabella; Gruen, Charli; Sassano, Antonella; Valencia, Julio; Wu, Emily; Yang, Howard; Needle, Gabe; Smith, Cari; Chin, Sung; Ebersole, Jessica; Marcelus, Christina; Fon, Anyen; Liu, Huaitian; Day, Chi-Ping; Young, Howard; Lee, Maxwell; Merlino, Glenn; Perez-Guijarro, Eva
errShare
errSave
Broad misappropriation of developmental splicing profile by cancer in multiple organs
errNATURE COMMUNICATIONS
IF15.7
err2022-12-12
err6
errOAAI
errSingh, Arashdeep; Rajeevan, Arati; Gopalan, Vishaka; Agrawal, Piyush; Day, Chi-Ping; Hannenhalli, Sridhar
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errSave
The Hitchhiker's Guide across a Waddington's landscape of melanoma
errDEVELOPMENTAL CELL
IF8.7
err2022-11-01
err2
errOAAI
errMarie, Kerrie L.; Merlino, Glenn; Day, Chi -Ping
errShare
errSave
Fast intratumor heterogeneity inference from single-cell sequencing data
errNATURE COMPUTATIONAL SCIENCE
IF18.3
err2022-09-08
err3
errOAAI
errKizilkale, Can; Mehrabadi, Farid Rashidi; Azer, Erfan Sadeqi; Perez-Guijarro, Eva; Marie, Kerrie L.; Lee, Maxwell P.; Day, Chi-Ping; Merlino, Glenn; Ergun, Funda; Sahinalp, S. Cenk; Malikic, Salem; Buluc, Aydin
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errSave
A T cell resilience model associated with response to immunotherapy in multiple tumor types (May, 10.1038/s41591-022-01799-y, 2022)
errNATURE MEDICINE
IF50
err2022-08-11
err1
errOAAI
errZhang, Yu; Vu, Trang; Palmer, Douglas C.; Kishton, Rigel J.; Gong, Lanqi; Huang, Jiao; Nguyen, Thanh; Chen, Zuojia; Smith, Cari; Livak, Ferenc; Paul, Rohit; Day, Chi-Ping; Wu, Chuan; Merlino, Glenn; Aldape, Kenneth; Guan, Xin-yuan; Jiang, Peng
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errSave
Cross-species identification of cancer resistance-associated genes that may mediate human cancer risk
errSCIENCE ADVANCES
IF12.5
err2022-08-05
err9
errOAAI
errNair, Nishanth Ulhas; Chen, Kuoyuan; Naddaf, Lamis; Sharon, Elad; Pal, Lipika R.; Rajagopal, Padma S.; Unterman, Irene; Aldape, Kenneth; Hannenhalli, Sridhar; Day, Chi-Ping; Tabach, Yuval; Ruppin, Eytan
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Research Directions

No research directions
Co-authors
Cooperation Journals
M
Mien‐Chie Hung
H-index: 163 · Papers: 1.5K
G
Giorgio Trinchieri
H-index: 157 · Papers: 782
N
Nicholas P. Restifo
H-index: 150 · Papers: 890
E
E. John Wherry
H-index: 142 · Papers: 638
K
Kenneth Aldape
H-index: 141 · Papers: 1.1K
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